mRNA_P-wetherbeei_contig835.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig835.4.1
Unique NamemRNA_P-wetherbeei_contig835.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: D8SNW3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SNW3_SELML)

HSP 1 Score: 70.5 bits (171), Expect = 1.420e-11
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  979 AEEECSVCLMGFEEGVNCFLLP-CGHIFHAECITLWLENHASCPVCKRDL 1125
            A  EC+VCL+ FEE     LLP CGH+FHA+CI +WLE H++CP+C+R+L
Sbjct:   26 AGPECTVCLLQFEENEQVRLLPDCGHLFHADCIDMWLETHSTCPLCRRNL 75
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A7R9Z645_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z645_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.600e-10
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  982 EEECSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEAAGKD 1143
            +  CS+CL  +EEG     LPCGH++H EC++ W+ NH  CP+C  DLEA G +
Sbjct:  331 QPSCSICLGDYEEGERLIRLPCGHVYHEECVSAWVSNHVRCPLCNYDLEAGGHE 384
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A7S1VRK2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VRK2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.080e-10
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  991 CSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEAAGKDPASVLMITPVAT 1179
            C++CL  +EEG     LPCGH++H EC+  W  NH  CP+C  DLE+   D AS    + V T
Sbjct:  150 CTICLGEYEEGEKLVKLPCGHVYHEECVDSWTTNHVRCPLCNFDLESVASDSASTAGTSTVTT 212
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A2C9UAV0_MANES (RING-type domain-containing protein n=2 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UAV0_MANES)

HSP 1 Score: 66.6 bits (161), Expect = 6.840e-10
Identity = 23/51 (45.10%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  973 MVAEEECSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDL 1125
            +++++ CSVC+ GF+ GV    +PCGH++HA CI+ WL N+ SCP+C+ ++
Sbjct:   49 VISDDVCSVCMEGFQSGVGGKRVPCGHVYHAGCISSWLSNYNSCPLCRSNI 99
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A7S3C9F5_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C9F5_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 7.380e-10
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  982 EEECSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLE 1128
            +E+C++C + FEEG +  LLPC H+FHA+CI +WL ++  CPVCK+++E
Sbjct:  186 DEKCAICQVEFEEGEDALLLPCKHLFHADCIDIWLADNKCCPVCKQEIE 234
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A6A1VS05_9ROSI (E3 ubiquitin-protein ligase RING1-like n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VS05_9ROSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-9
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  973 MVAEEECSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDL 1125
            ++  + CSVC+  F  G     +PCGH++HA CI  WL +H+SCPVC+R++
Sbjct:   50 VITTDVCSVCIESFRSGEGGKQVPCGHVYHANCIASWLSSHSSCPVCRREI 100
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A7S4IUE7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUE7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.850e-9
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:  907 GDGGDGLASVVRRGST----AWARLRMVAEEE------CSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEA 1131
            G+GG GL  +   GS     A A+  ++ +E       CS+CL  +EEG     LPCGH++H EC+T W+ NH  CP+C  DLEA
Sbjct:  351 GNGGGGL--IADGGSDDDSIAKAKAGLMMDESGSGQPACSICLGDYEEGERLVRLPCGHVYHEECVTAWVSNHVRCPLCNYDLEA 433
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: I1R3C5_ORYGL (RING-type domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=I1R3C5_ORYGL)

HSP 1 Score: 64.7 bits (156), Expect = 3.420e-9
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  973 MVAEEECSVCLMGFEEGVNCFLLP-CGHIFHAECITLWLENHASCPVC 1113
            M A  EC+VCL   +EG     LP CGH+FH ECI +WL +HASCPVC
Sbjct:    1 MAASVECAVCLSVVDEGEKVRQLPACGHVFHQECINMWLSSHASCPVC 48
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A448ZD87_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD87_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.590e-9
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  961 ARLRMVAEEE--CSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEAAGKD 1143
            A  + V +EE  CS+CL  +E+G N   LPCGH+FH +CIT W +++  CP+C  DLE+  +D
Sbjct:  284 AAAKTVDDEEPTCSICLCEYEKGDNLVSLPCGHVFHEDCITSWTDHNKRCPLCNADLESLRRD 346
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BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Match: A0A7R9ZSU8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSU8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.920e-9
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  982 EEECSVCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEA 1131
            E  CS+CL  +E+G N   LPC H++HA+CIT W +NH  CP+C  DL A
Sbjct:  172 EPHCSICLGEYEDGENLVSLPCKHVYHADCITSWTDNHTRCPLCNFDLAA 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig835.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8SNW3_SELML1.420e-1158.00RING-type domain-containing protein (Fragment) n=3... [more]
A0A7R9Z645_9STRA4.600e-1048.15Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1VRK2_9STRA5.080e-1044.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A2C9UAV0_MANES6.840e-1045.10RING-type domain-containing protein n=2 Tax=Croton... [more]
A0A7S3C9F5_9CHLO7.380e-1051.02Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A6A1VS05_9ROSI1.740e-945.10E3 ubiquitin-protein ligase RING1-like n=1 Tax=Mor... [more]
A0A7S4IUE7_9STRA1.850e-942.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
I1R3C5_ORYGL3.420e-958.33RING-type domain-containing protein n=2 Tax=Oryza ... [more]
A0A448ZD87_9STRA3.590e-946.03RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A7R9ZSU8_9STRA3.920e-952.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig835contigP-wetherbeei_contig835:3419..5808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SMC7
PFAMszf-RING_2
Model size1733
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal anchor
Exons4
Evalue1.69e-09
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,2XFFQ@2836|Bacillariophyta
DescriptionRING-type zinc-finger
Cds size1092
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig835.4.1prot_P-wetherbeei_contig835.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig835 3964..5455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.1807077-UTR-P-wetherbeei_contig835:3418..39631683187035.1807077-UTR-P-wetherbeei_contig835:3418..3963Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig835 3419..3963 -
1683187035.2174103-UTR-P-wetherbeei_contig835:5455..54671683187035.2174103-UTR-P-wetherbeei_contig835:5455..5467Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig835 5456..5467 -
1683187035.2267392-UTR-P-wetherbeei_contig835:5724..58081683187035.2267392-UTR-P-wetherbeei_contig835:5724..5808Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig835 5725..5808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.1905477-CDS-P-wetherbeei_contig835:3963..41341683187035.1905477-CDS-P-wetherbeei_contig835:3963..4134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 3964..4134 -
1683187035.1993842-CDS-P-wetherbeei_contig835:4348..50411683187035.1993842-CDS-P-wetherbeei_contig835:4348..5041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 4349..5041 -
1683187035.208168-CDS-P-wetherbeei_contig835:5227..54551683187035.208168-CDS-P-wetherbeei_contig835:5227..5455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 5228..5455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig835.4.1

>prot_P-wetherbeei_contig835.4.1 ID=prot_P-wetherbeei_contig835.4.1|Name=mRNA_P-wetherbeei_contig835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=364bp
MATIAGPRAASPEEEEAARELRRAHQYRRCYAGIYIAFTSLLFFGACAWA
VFSQTPQAFLAAVFLAVLAIHLTRKLVRGLWYAARWSENEQMRIDIQMQG
QQLQQQGVAANGGLSDQGRSAFAAFTASRGLAIVQNGGRWSLRNVANPGG
ATGRAGDAGVIDMPEPAQRSVPAVSSAAWMTSAEAMPPRPGDAECGLASP
GAAAAAEGSSAVVFDFGVHPARRSSGGSATISRVEAAASAAAAATGVSVK
DAYMAANGGGNDGGGGSAIRGDGGDGLASVVRRGSTAWARLRMVAEEECS
VCLMGFEEGVNCFLLPCGHIFHAECITLWLENHASCPVCKRDLEAAGKDP
ASVLMITPVATPV*
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mRNA from alignment at P-wetherbeei_contig835:3419..5808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig835.4.1 ID=mRNA_P-wetherbeei_contig835.4.1|Name=mRNA_P-wetherbeei_contig835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2390bp|location=Sequence derived from alignment at P-wetherbeei_contig835:3419..5808- (Phaeothamnion wetherbeei SAG_119_79)
GGAAATTGGCGGTAGGAATCGGGATGCACGCTGCCGTGCTTATTCATTCC
TACTCCAAAGAGACGGCGCGAGACACGTCAAAAGGTGCGTTCTCAAGAAG
CAAGGCCGAGAAAACGAAGCACGGAAACGAAGAACCGTTCGTCTTGCGTT
CCCGCTGCTGCGTGTGTGTTAATGAAAAAGTGCGAGGCTCACTAGCGTCG
TTTATGCGCCGGCAGGCCTTTGTGTTGCCACAAGATTGCATCTTTGCACA
ATCGAGTGCTTTCAAATATGTTGTTGGTGACCCAGGTGCGCTCGGACTCT
GATCCATGTGACTTTCCGCGGACCTCGGCTGCTCTCTCTAGAAACTAAAT
AAGATGGCAACGATTGCGGGACCAAGAGCGGCTTCGCCTGAAGAGGAAGA
GGCTGCACGGGAATTGAGGCGTGCCCACCAATACCGCCGGTGCTACGCTG
GAATCTATATTGCATTCACGTCGCTTCTCTTCTTCGGGGCGTGCGCCTGG
GCGGTGTTCTCTCAGACGCCACAGGCGTTTCTGGCCGCAGTTTTCCTCGC
AGTCCTCGCCATCCATCTAACTCGGAAGCTGGTGAGTTCGCTCCTGTTTT
CCTTCTCTCCCAACGAAACTGCAAGTAGTAACTGTGCCGCCACAACTTTG
CCTCATATTCCTCCTAAAAGCACTGTCCTATGGATAAGAAGCTGCTTCGG
GAAGAGAATGGGACGGGACAACTTTTGCCTCACACCGCTGTGCCGGCCTG
CCCACGCTTCACGGCAGGTGCGGGGGCTCTGGTACGCGGCGCGGTGGTCC
GAAAATGAACAGATGCGGATCGATATCCAGATGCAGGGGCAGCAGCTGCA
GCAGCAGGGCGTCGCCGCCAATGGCGGGTTGAGCGATCAGGGCAGGAGCG
CCTTTGCCGCCTTCACGGCGTCGCGCGGCCTCGCCATCGTCCAGAACGGC
GGGAGGTGGAGCCTCCGCAACGTTGCAAACCCCGGCGGCGCCACGGGCAG
AGCCGGTGATGCCGGAGTCATTGACATGCCTGAACCGGCGCAGCGGTCGG
TGCCAGCCGTCTCCAGCGCTGCCTGGATGACGTCCGCCGAGGCGATGCCG
CCGCGGCCAGGCGACGCCGAATGCGGACTAGCTTCGCCGGGCGCGGCGGC
GGCGGCTGAGGGATCATCTGCCGTGGTCTTCGATTTTGGCGTTCACCCTG
CTCGGCGCAGCAGCGGCGGCAGCGCAACGATATCCCGGGTGGAGGCCGCC
GCATCAGCGGCGGCGGCAGCAACCGGCGTCAGTGTGAAAGACGCCTATAT
GGCTGCCAACGGCGGAGGGAACGATGGCGGCGGCGGCAGCGCCATCAGAG
GCGATGGTGGCGACGGCTTGGCTTCCGTTGTCCGAAGGGGCAGCACTGCG
TGGGCACGCCTCCGCATGGTAGCAGAAGAGGAGTGCTCCGTCTGCCTAAT
GGGCTTTGAGGTGAGCTTCTCTGTCCTCGCTTTTGGTTATGTCTCTGCTA
CAATTTCCTTGAAATTGCAGTTGAACAAAAGACGGAAGTCTGCTTGCTGG
ATGGGACCACATCATTCAGCTGTGGCGGCGGTGCCAATTCTTTACCACGT
TATTTACTTTTGACGCCCCGTACGTAATCAAAATCCCGTCGGACCCCGTA
ACTCTCTCCCAACCTATCACGCAGGAGGGAGTCAACTGCTTCCTCCTTCC
CTGCGGTCATATTTTCCATGCGGAATGCATCACTTTATGGCTAGAAAACC
ACGCCTCCTGCCCAGTCTGCAAACGGGACCTGGAAGCAGCTGGAAAAGAC
CCGGCGTCAGTCCTTATGATCACGCCTGTGGCGACGCCAGTGTGAAAAGC
GCAGCGACACGTCGGCGGCAACGGTGCGGCAGCGCGGCGCCAGCGAGGGA
CTGGCGGTAACGGCCGCACGGCGCGCGTCGGCTGCCAGCCGACTCACGAA
TTGCCTTCGCAGCCATGATGGAAATCAACGGCCGACCTGCCAGAAACGTC
GCGGTGAGCATTGTGGAGAAGCGGGAGGGGCGAGCTGCACCATGGAGGGC
AACGCCATCGCAGCCGACGCGCCATGCTCATCGCAGCCGACGCGCCATGC
TTTGGCCATCGTGTTAGATAACTTCTTTTTTGGACACCAAAATTGCACAA
CCATTCCGGGAGGGAGATTGGCTCCCCTCAGCGGCAACGTGTGTAACGCA
GAAAGTACTTCATGGGGTGATGACATGCGAATCAGAGAGATCGTATGGAA
GATGTTGGCGGGTCGATGATCAGCCCATTCGTGCAGTGGTAAAGGAACGA
AAGGTGGCAATAGAAAGGCATAGGATGGTGGCCAAAATGCCGGCTGCGAC
AGGCACTCTCCCTGACATGTAATTCAATACCATTCACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig835:3419..5808-

>mRNA_P-wetherbeei_contig835.4.1 ID=mRNA_P-wetherbeei_contig835.4.1|Name=mRNA_P-wetherbeei_contig835.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig835:3419..5808- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACGATTGCGGGACCAAGAGCGGCTTCGCCTGAAGAGGAAGAGGC
TGCACGGGAATTGAGGCGTGCCCACCAATACCGCCGGTGCTACGCTGGAA
TCTATATTGCATTCACGTCGCTTCTCTTCTTCGGGGCGTGCGCCTGGGCG
GTGTTCTCTCAGACGCCACAGGCGTTTCTGGCCGCAGTTTTCCTCGCAGT
CCTCGCCATCCATCTAACTCGGAAGCTGGTGCGGGGGCTCTGGTACGCGG
CGCGGTGGTCCGAAAATGAACAGATGCGGATCGATATCCAGATGCAGGGG
CAGCAGCTGCAGCAGCAGGGCGTCGCCGCCAATGGCGGGTTGAGCGATCA
GGGCAGGAGCGCCTTTGCCGCCTTCACGGCGTCGCGCGGCCTCGCCATCG
TCCAGAACGGCGGGAGGTGGAGCCTCCGCAACGTTGCAAACCCCGGCGGC
GCCACGGGCAGAGCCGGTGATGCCGGAGTCATTGACATGCCTGAACCGGC
GCAGCGGTCGGTGCCAGCCGTCTCCAGCGCTGCCTGGATGACGTCCGCCG
AGGCGATGCCGCCGCGGCCAGGCGACGCCGAATGCGGACTAGCTTCGCCG
GGCGCGGCGGCGGCGGCTGAGGGATCATCTGCCGTGGTCTTCGATTTTGG
CGTTCACCCTGCTCGGCGCAGCAGCGGCGGCAGCGCAACGATATCCCGGG
TGGAGGCCGCCGCATCAGCGGCGGCGGCAGCAACCGGCGTCAGTGTGAAA
GACGCCTATATGGCTGCCAACGGCGGAGGGAACGATGGCGGCGGCGGCAG
CGCCATCAGAGGCGATGGTGGCGACGGCTTGGCTTCCGTTGTCCGAAGGG
GCAGCACTGCGTGGGCACGCCTCCGCATGGTAGCAGAAGAGGAGTGCTCC
GTCTGCCTAATGGGCTTTGAGGAGGGAGTCAACTGCTTCCTCCTTCCCTG
CGGTCATATTTTCCATGCGGAATGCATCACTTTATGGCTAGAAAACCACG
CCTCCTGCCCAGTCTGCAAACGGGACCTGGAAGCAGCTGGAAAAGACCCG
GCGTCAGTCCTTATGATCACGCCTGTGGCGACGCCAGTGTGA
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