mRNA_P-wetherbeei_contig8290.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8290.2.1
Unique NamemRNA_P-wetherbeei_contig8290.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A835ZA14_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA14_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.050e-41
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1
Query:   16 AKPGTVKVGEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            AKPG+V+VG MEL CKAG D KSLGDCPFTHY  MVL +KGLP  L P APDAKPDWLVED++GKMPCLVHDGEA TESSEIVRY+
Sbjct:   97 AKPGSVEVGTMELYCKAGPDSKSLGDCPFTHYAHMVLRYKGLPVTLVPCAPDAKPDWLVEDHEGKMPCLVHDGEAYTESSEIVRYI 182          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: D8LMV2_ECTSI (GSH-dependent dehydroascorbate reductase, monomeric enzymes catalyzing the reduction of DHA into asc n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV2_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 5.590e-35
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   10 ATAKPGTVKVGEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            A A PG ++  +MEL CKA ADG +LGDCPFTHYV MVL +KGLPFKLTPVAPDAKPDWLVEDY+G+MPCLV   EA TES+ IV Y+
Sbjct:  100 AKAGPGLLEP-DMELFCKAAADGNALGDCPFTHYVHMVLQYKGLPFKLTPVAPDAKPDWLVEDYEGQMPCLVDSKEAYTESANIVDYV 186          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A4D9D9T1_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.270e-30
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   40 GEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            G +ELLCKAG DG +LGDCPF HYV MVL +KGL ++L P+ P+ KP+WLVE Y GKMPCLVHD EA T+S  I +YL
Sbjct:   29 GRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYL 106          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A7S2SR18_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR18_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.000e-29
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   37 VGEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            V ++ L  KAG DG+S+GDCPF H V MVL  KGL + L+P APD KP WLV+ YDGKMPCLVHDGEA TESS IV YL
Sbjct:    3 VQQLHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYL 81          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: W7U001_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U001_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.600e-29
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   40 GEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            G +ELLCKAG DG +LGDCPF HYV MVL +KGL ++L P+ P+ KP+WLVE Y GKMPCLVHD EA T+S  I +YL
Sbjct:   97 GRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYL 174          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A7S2SQ66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ66_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.770e-29
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 AKEATAKPGTVKVGEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            A  ++AKP    V ++ L  KAG DG+S+GDCPF H V MVL  KGL + L+P APD KP WLV+ YDGKMPCLVHDGEA TESS IV YL
Sbjct:   58 AVSSSAKP----VQQLHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYL 144          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A7S3XL57_HETAK (Glutathione dehydrogenase (ascorbate) (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL57_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.840e-21
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   43 EMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            ++ L  KAG DG+SLGDCPF H++ M L  K L + L P     KP WL + Y+GKMPCLVH GEA TESS +  YL
Sbjct:  104 DIVLYVKAGPDGESLGDCPFAHFIQMCLQRKRLAYDLRPCTAATKPSWLADHYEGKMPCLVHKGEAYTESSVVAEYL 180          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A6U3NUI9_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUI9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.180e-21
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   46 MELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            M L  KAG DGKS+GDCPF HYV +VLH KGL + + P   D KP WL++ Y+G MP L H  E  TES  I +YL
Sbjct:    1 MTLYIKAGPDGKSVGDCPFAHYVRIVLHEKGLEYDVRPSTQDTKPQWLIDYYEGSMPALRHRKECYTESDVIAQYL 76          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A7S3KYN6_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYN6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.490e-21
Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   40 GEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL 273
            G M L  KAG DGKS+GDCPF H+V MVL  KGL ++L P   D KP WLVE YDGKMP L H  E   ES  I  Y+
Sbjct:   62 GGMTLYLKAGPDGKSVGDCPFAHFVRMVLEEKGLDYELQPCVADTKPAWLVEFYDGKMPALRHRKECYVESDVIAEYV 139          
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Match: A0A553PQ68_TIGCA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PQ68_TIGCA)

HSP 1 Score: 90.5 bits (223), Expect = 2.030e-20
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   43 EMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFKLTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEI 261
            +MEL  KAG D KS+GDCPF HYV MV+  KG+  ++ P+ PD KPDWL+ED++GKMP L H G    ES+ I
Sbjct:    6 KMELFIKAGPDKKSIGDCPFAHYVRMVIALKGVDCEVIPLPPDDKPDWLIEDFEGKMPVLDHKGMRTGESNAI 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8290.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA14_9STRA2.050e-4179.07Glutathione dehydrogenase (ascorbate) n=1 Tax=Trib... [more]
D8LMV2_ECTSI5.590e-3571.59GSH-dependent dehydroascorbate reductase, monomeri... [more]
A0A4D9D9T1_9STRA6.270e-3065.38Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
A0A7S2SR18_9STRA2.000e-2967.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U001_9STRA2.600e-2965.38Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
A0A7S2SQ66_9STRA5.770e-2962.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XL57_HETAK2.840e-2154.55Glutathione dehydrogenase (ascorbate) (Fragment) n... [more]
A0A6U3NUI9_9STRA3.180e-2155.26Glutathione dehydrogenase (ascorbate) n=1 Tax=Dity... [more]
A0A7S3KYN6_9STRA3.490e-2157.69Glutathione dehydrogenase (ascorbate) n=1 Tax=Amph... [more]
A0A553PQ68_TIGCA2.030e-2056.16Glutathione dehydrogenase (ascorbate) n=1 Tax=Tigr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8290contigP-wetherbeei_contig8290:2177..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMV2
PFAMsGST_C_2,GST_N_3
Model size273
Max annot lvl2759|Eukaryota
KEGG rclassRC00011,RC00092,RC00948
KEGG koko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.17e-36
EggNOG OGsKOG1422@1|root,KOG1422@2759|Eukaryota
EC1.8.5.1,2.5.1.18
Descriptionchloride channel activity
Cds size273
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.7495728-CDS-P-wetherbeei_contig8290:2176..23531683187031.7495728-CDS-P-wetherbeei_contig8290:2176..2353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8290 2177..2353 +
1683187031.7614381-CDS-P-wetherbeei_contig8290:2751..28471683187031.7614381-CDS-P-wetherbeei_contig8290:2751..2847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8290 2752..2847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8290.2.1prot_P-wetherbeei_contig8290.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8290 2177..2847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8290.2.1

>prot_P-wetherbeei_contig8290.2.1 ID=prot_P-wetherbeei_contig8290.2.1|Name=mRNA_P-wetherbeei_contig8290.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
AKEATAKPGTVKVGEMELLCKAGADGKSLGDCPFTHYVSMVLHHKGLPFK
LTPVAPDAKPDWLVEDYDGKMPCLVHDGEADTESSEIVRYL
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mRNA from alignment at P-wetherbeei_contig8290:2177..2847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8290.2.1 ID=mRNA_P-wetherbeei_contig8290.2.1|Name=mRNA_P-wetherbeei_contig8290.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=671bp|location=Sequence derived from alignment at P-wetherbeei_contig8290:2177..2847+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGAGGCGACGGCCAAGCCCGGCACGGTGAAGGTCGGGGAGATGGA GCTGCTTTGCAAGGCCGGCGCCGACGGCAAGAGCCTCGGCGACTGCCCCT TCACCCACTACGTGTCCATGGTGCTCCACCACAAGGGGCTCCCCTTCAAG CTTACGCCGGTGGCGCCCGATGCAAAGGTGTGCGCGAAAGAGCGTTGTCA TGTTCTTTTTGTGCATCTGTATGCCTGCCATCCAACTCTTTTGCCTTCCT CCTCTTCTGCTGGCAATGGGCCTATAACGGCAAATAAGAGATGTGCAATT GCATTTGCAAAGAAAGGCCTTACTTCTTTCTGGTCCGAATCTCTCACGCA TTCCCCGATGATTGTCTTGAGTTTGTGGCCGTTGTTCCGGCACCCGCCAT ATTGCTGTCTATAAACCTCTCTTCTTAACCCTTCGTTTCTTCCTTTCCTC CGTTCTTCCACGAAACCGGCCGCTGGCATCGTTGTCTTGCCAATCGGCGC AATGGTTCAACGATGCGGCTGGTTTACTCTGGCCACTGACCAACAACCGA CCAACAAACGAAATAACGTATGCAGCCGGACTGGCTGGTGGAGGACTACG ACGGAAAGATGCCGTGCCTGGTGCACGACGGAGAAGCGGACACGGAGAGC TCGGAGATTGTGCGCTACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8290:2177..2847+

>mRNA_P-wetherbeei_contig8290.2.1 ID=mRNA_P-wetherbeei_contig8290.2.1|Name=mRNA_P-wetherbeei_contig8290.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig8290:2177..2847+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGAGGCGACGGCCAAGCCCGGCACGGTGAAGGTCGGGGAGATGGA
GCTGCTTTGCAAGGCCGGCGCCGACGGCAAGAGCCTCGGCGACTGCCCCT
TCACCCACTACGTGTCCATGGTGCTCCACCACAAGGGGCTCCCCTTCAAG
CTTACGCCGGTGGCGCCCGATGCAAAGCCGGACTGGCTGGTGGAGGACTA
CGACGGAAAGATGCCGTGCCTGGTGCACGACGGAGAAGCGGACACGGAGA
GCTCGGAGATTGTGCGCTACCTC
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