mRNA_P-wetherbeei_contig829.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig829.4.1
Unique NamemRNA_P-wetherbeei_contig829.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A7S4BNS6_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNS6_CHRCT)

HSP 1 Score: 141 bits (355), Expect = 1.290e-33
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 1
Query: 1567 MGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMREEGLLVP 2037
            M A +   L  Y  +GR   A ++HGDPVFSN L T E ++ LLDMRG LG Q T  GD  YDL+KVYQSL GYDF+IL    +  GE   E L EL++ F S+++  YP     D+ ++TA  +   VPLHT+++HQLA+L TC A++   G   P
Sbjct:  126 MFATIKEALVRYESEGRVRGANVVHGDPVFSNVLLTAEPKIYLLDMRGQLGDQLTLQGDLAYDLSKVYQSLFGYDFIIL---GQTPGERDFELLEELRDTFRSFLAVEYPETAMEDVEMLTAQHYFGIVPLHTNKQHQLAYLQTCAALLSRIGSASP 279          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A8J6CFN7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFN7_DIALT)

HSP 1 Score: 144 bits (363), Expect = 3.600e-32
Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 1
Query: 1558 PAAMGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMREEGLL 2031
            P A   A+L FL  Y    R   A  IHGDPVFSN + T++ +V L+DMRG+LG + TT GD  YDL+KVYQSL GYDF++LD+      E    +L EL+E FW  V + YP     DIR++TA+ F S VPLH +R HQ  +L   E+++  EGLL
Sbjct:  664 PDAAATAILEFLAGYEGAARCSHAWFIHGDPVFSNAILTRDGQVKLIDMRGSLGDRVTTQGDRNYDLSKVYQSLCGYDFMLLDKRI---AEGTAHSLAELREVFWQHVRSRYPQTAERDIRLLTAAHFFSIVPLHEERDHQERYLRASESMLVVEGLL 818          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A0K3CQS9_RHOTO (BY PROTMAP: gi|647400573|emb|CDR46164.1| RHTO0S12e01134g1_1 [Rhodosporidium toruloides] n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CQS9_RHOTO)

HSP 1 Score: 142 bits (358), Expect = 1.080e-31
Identity = 133/486 (27.37%), Postives = 181/486 (37.24%), Query Frame = 1
Query:  598 GFVRPRCFNRVTLVDEKYVHKSGAREHMTGEIFFYRNIPAPVRDIFPAVAEIRDSADVPTPSIVLERVDGVSFSHLLVSHCLTPGRLRALLAALRRLHTCLPPPRLPSLVAATAPPLAEATAARLWLNGTVSSATRAACHAVTHGEATSGQETADAAACEAVTTKAGAINAAAPKFGSDAPWAFTAAPSATAAAQAAPEK----LDLYANLAPKLRLRLEAHRSLYMGLALPLREGQALPSSPKTTLAAPEPEQVAIAEPTTLEMVTRRAAPWEAAAAPPLAATATSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAAMGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEAR--------GEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMRE 2019
            G + PR FN V +++   V KS   E + GEI+F+  IP  ++D+FPA+  +       + S+ ++RV GV+FSHLLV   LT GRL   LAAL R+H+                            NG V            H                                        +  PS  A   A  E     +D+YAN A K+  R +A   +Y  L                                                                                                 A+ + LL FL+ +  D RA A+ +IHGDPVFSN L TK+  VV +D+RG  G   T  GDA YDLAKVYQSL+GYDF +L     A+            R  L +LQ  FW++V  HY TV   D+ ++TASL  S +PLH     +L F   C+A+M +
Sbjct:  401 GMLVPRSFNAVQVIENAVV-KSSTSEAILGEIYFFSRIPTDIKDVFPAINTLNFVPSTQSFSLTMQRVHGVTFSHLLVGRALTVGRLEKFLAALSRIHSS---------------------------NGIVDD----------H---------------------------------------ISVPPSLAARLNALGESPNRNVDIYANYAAKVSERYKAFLPVYQDLG--------------------------------------------------------------------------------------------DDHEAIASRLLAFLQDFEADDRAQASHVIHGDPVFSNALFTKDNTVVFIDVRGRQGDVLTLRGDALYDLAKVYQSLQGYDFALLADPISAQTAELVDLVSPVDRRLLQDLQGVFWAFVKKHY-TVDRRDLILVTASLLFSLIPLHDPPMRRL-FYKMCKAVMAQ 715          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A7S3X9G3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X9G3_9SPIT)

HSP 1 Score: 134 bits (336), Expect = 1.860e-30
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 1
Query: 1591 LEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIM 2013
            LE Y  + R H A +IHGDPVFSN L T+   + LLDMRG +G Q T  GD  YDL+KVYQSL GYDF+IL++  + R     E L +L+E F  +V+  YP V   DI  +TAS +   VPLHT+++HQLA+L TC+ ++
Sbjct:  233 LEKYVEECRYHHANVIHGDPVFSNILLTETPSIALLDMRGEVGSQLTMQGDMLYDLSKVYQSLLGYDFIILNQPMQERDA---EILEDLREIFHDFVNHEYPGVDFNDIIKLTASHYFGIVPLHTNQKHQLAYLETCKVLL 370          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A812T8Z6_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812T8Z6_SYMPI)

HSP 1 Score: 137 bits (346), Expect = 3.920e-30
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 1579 LLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMREEGLL 2031
            L+ FL+ +    RAH A  IHGDPVFSN L T + ++V++DMRG LG   TT GD  YDL+KV+QSL GYDF++LD+A +   EP  E    L+  FW  V   YP V    +R++TAS F + VPLH  R     +L T  +++  EGLL
Sbjct:  606 LIGFLDEFEASQRAHHAFYIHGDPVFSNILRTSDDKIVMIDMRGQLGKWTTTQGDVHYDLSKVFQSLCGYDFMLLDQALD---EPASETFDALRAAFWEEVRQRYPDVSHRQVRLLTASHFFTIVPLHEVRSRMARYLRTAHSMLHVEGLL 753          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A7S0PV85_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PV85_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 4.190e-30
Identity = 71/150 (47.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query: 1564 AMGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIM 2013
            +M A +   L  Y  + R   + ++HGDPVFSN L T + R+ LLDMRG LG   T  GD  YDL+KVYQSL GYD++IL + A  R     E L EL++ F S+V+ HYP V   D+ ++TAS +   VPLHT+++HQLA+L TC A++
Sbjct:  280 SMFAQISHALSRYQAEERYVLSHVVHGDPVFSNVLLTTDPRIYLLDMRGELGEIMTLQGDVLYDLSKVYQSLFGYDYIILGQPAAERDY---ELLEELRDTFRSFVAEHYPKVCIPDVEMLTASHYFGIVPLHTNKQHQLAYLQTCAALL 426          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A8J2WU07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WU07_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.150e-29
Identity = 71/153 (46.41%), Postives = 95/153 (62.09%), Query Frame = 1
Query: 1564 AMGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMREE 2022
            A+ + +L FLE Y    R + AG IHGDPVFSN L T + RV  LDMRG LG   TT GD  YDL+KVYQSL GYD +ILD   +A G    + L +L+  F +W+S +YP+V+  D+R+I A+ +   VPLH +  HQ  FLA    ++  +
Sbjct:  585 ALASKILSFLEDYESQKRFNKAGYIHGDPVFSNVLLTHDGRVKFLDMRGALGDVLTTCGDVAYDLSKVYQSLCGYDAIILDVPVDAAGA---QTLAKLRSCFATWLSRNYPSVKMRDVRLIVAAHYFCIVPLHDNLHHQRQFLAKARWLLEAD 734          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A7S2D579_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D579_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 5.260e-29
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1591 LEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIM 2013
            L  +  + R   + +IHGDPVFSN L T + R+ LLDMRG LG   T  GD TYDL+KVYQSL GYD++IL +    R     E L EL+  F ++V  HYPTV   D+  ITAS +   VPLH +R HQ+A+L T +A++
Sbjct:  130 LSSFETEARWQHSAVIHGDPVFSNVLLTDDGRIYLLDMRGELGNILTLQGDLTYDLSKVYQSLLGYDYIILSQPLLERDG---ELLEELRYIFRTFVREHYPTVAIADVIKITASHYFGIVPLHVNRDHQIAYLQTAQALI 267          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: A0A7S1RF16_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RF16_ALECA)

HSP 1 Score: 127 bits (320), Expect = 8.490e-29
Identity = 69/148 (46.62%), Postives = 89/148 (60.14%), Query Frame = 1
Query: 1588 FLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIMREEGLL 2031
            FLE +    RA  A  IHGDPVFSN + T +  + L+DMRG LG + TT GD  YDL+KVYQSL GYDF++LD+A +A      E    L+  FW  V   YP+V   D+R+ITAS F S VPLH  R     +L    +++  EGL+
Sbjct:  179 FLEEFEASERAQHAFYIHGDPVFSNVIRTADDGIALIDMRGELGGRLTTQGDVQYDLSKVYQSLCGYDFMMLDQAPDAATS---EVFDGLRAVFWEEVQKLYPSVLHRDVRLITASHFFSMVPLHELRSRMARYLRASSSMLMVEGLM 323          
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Match: D7FRN4_ECTSI (Putative hydrolase (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 8.560e-29
Identity = 69/150 (46.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 1567 MGAALLPFLEHYAYDGRAHAAGLIHGDPVFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVILDRAAEARGEPGREALTELQEE-FWSWVSAHYPTVRPCDIRVITASLFLSAVPLHTDRRHQLAFLATCEAIM 2013
            M   +L +L  Y    R   A  +HGDPVFSNCL  KE  V  +DMRG LG    T GD  YDLAKVYQSL GYDF+I+D+  +       E L +L++  FW +V  +Y   +P DI ++ AS FLS VPLH +R HQ  F+  C  I+
Sbjct:  513 MSRIILSYLRSYQEGARFRRADFVHGDPVFSNCLQNKEGDVAFVDMRGALGDLLCTEGDTNYDLAKVYQSLCGYDFIIMDKDVDPNAV---EMLRDLEQNVFWPFVRENYAGTKPEDIAMLAASHFLSMVPLHENRGHQARFMRACNDIV 659          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig829.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4BNS6_CHRCT1.290e-3346.50Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A8J6CFN7_DIALT3.600e-3248.10Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0K3CQS9_RHOTO1.080e-3127.37BY PROTMAP: gi|647400573|emb|CDR46164.1| RHTO0S12e... [more]
A0A7S3X9G3_9SPIT1.860e-3049.65Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A812T8Z6_SYMPI3.920e-3046.36Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A7S0PV85_9EUKA4.190e-3047.33Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8J2WU07_9STRA2.150e-2946.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D579_9EUKA5.260e-2948.23Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S1RF16_ALECA8.490e-2946.62Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
D7FRN4_ECTSI8.560e-2946.00Putative hydrolase (ISS) n=1 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig829contigP-wetherbeei_contig829:5432..7808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRN4
PFAMsNTP_transf_3,NTP_transferase
Model size2058
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.05e-43
EggNOG OGs28NC4@1|root,2QUXI@2759|Eukaryota
Cds size2055
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.6428323-CDS-P-wetherbeei_contig829:5432..56271683187031.6428323-CDS-P-wetherbeei_contig829:5432..5627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig829 5433..5627 -
1683187031.6517816-CDS-P-wetherbeei_contig829:5948..78081683187031.6517816-CDS-P-wetherbeei_contig829:5948..7808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig829 5949..7808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig829.4.1prot_P-wetherbeei_contig829.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig829 5433..7808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig829.4.1

>prot_P-wetherbeei_contig829.4.1 ID=prot_P-wetherbeei_contig829.4.1|Name=mRNA_P-wetherbeei_contig829.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=685bp
SRPTLPPCVGTCADDEAEVDPVADGPSSCNCGGAAAAAAAATAAAAGDDA
AAVRILAAAAVRYDEFALLKRPAADAYIGWGGGRGAIGTAFDVKKEIGWQ
LSCSGTSDGAGGAAGGSGGVSTRAARQNDFAASDANTGGFCHCRTASAVR
TGSRLSHKEVAAAAPVAVAAAAAAAPGVAGTGCAVAGGGGDTADGTLPPG
FVRPRCFNRVTLVDEKYVHKSGAREHMTGEIFFYRNIPAPVRDIFPAVAE
IRDSADVPTPSIVLERVDGVSFSHLLVSHCLTPGRLRALLAALRRLHTCL
PPPRLPSLVAATAPPLAEATAARLWLNGTVSSATRAACHAVTHGEATSGQ
ETADAAACEAVTTKAGAINAAAPKFGSDAPWAFTAAPSATAAAQAAPEKL
DLYANLAPKLRLRLEAHRSLYMGLALPLREGQALPSSPKTTLAAPEPEQV
AIAEPTTLEMVTRRAAPWEAAAAPPLAATATSAATPPLAAAMATSAATPP
LAAATATSAATPPLAAAASPAAMGAALLPFLEHYAYDGRAHAAGLIHGDP
VFSNCLNTKEARVVLLDMRGTLGPQPTTAGDATYDLAKVYQSLRGYDFVI
LDRAAEARGEPGREALTELQEEFWSWVSAHYPTVRPCDIRVITASLFLSA
VPLHTDRRHQLAFLATCEAIMREEGLLVPPVKPHP
back to top

mRNA from alignment at P-wetherbeei_contig829:5432..7808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig829.4.1 ID=mRNA_P-wetherbeei_contig829.4.1|Name=mRNA_P-wetherbeei_contig829.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2377bp|location=Sequence derived from alignment at P-wetherbeei_contig829:5432..7808- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGGCCGACGCTCCCTCCCTGTGTGGGAACCTGTGCGGACGACGAAGC CGAAGTCGACCCGGTTGCCGACGGACCCTCTTCGTGCAACTGCGGCGGCG CAGCTGCGGCCGCTGCCGCGGCCACTGCCGCCGCCGCGGGCGACGATGCT GCCGCTGTTCGGATCCTGGCGGCTGCCGCCGTCCGATACGATGAGTTCGC TCTACTGAAGCGGCCCGCGGCCGACGCCTACATCGGCTGGGGCGGCGGCC GCGGGGCGATCGGCACGGCTTTTGACGTCAAGAAGGAGATCGGCTGGCAA CTAAGCTGCAGCGGCACGAGCGATGGGGCGGGTGGCGCTGCCGGTGGTAG TGGCGGTGTTAGCACACGCGCCGCTCGCCAAAACGACTTTGCCGCCAGCG ATGCTAATACCGGCGGCTTCTGCCACTGCCGAACCGCGTCTGCTGTCCGC ACCGGTTCCCGTCTGAGCCACAAAGAAGTTGCTGCGGCCGCCCCCGTCGC CGTCGCTGCTGCTGCTGCTGCTGCCCCTGGCGTTGCTGGAACTGGTTGCG CCGTTGCTGGCGGCGGCGGCGACACCGCCGACGGCACGCTGCCGCCGGGG TTCGTCCGGCCGCGCTGCTTCAATCGCGTGACGCTTGTGGATGAAAAATA CGTGCACAAGTCCGGCGCCCGTGAGCACATGACCGGAGAGATCTTCTTTT ACCGGAACATTCCAGCGCCGGTCCGGGATATTTTCCCGGCAGTGGCGGAG ATCCGGGACAGCGCCGACGTCCCGACGCCGTCCATCGTGCTGGAGCGGGT CGACGGCGTTAGCTTCAGCCACCTCCTTGTGAGCCACTGCCTGACGCCGG GCCGCCTGCGGGCGCTCCTGGCGGCGCTGCGGCGGCTGCACACGTGTCTA CCGCCGCCGCGACTGCCGTCGCTCGTAGCAGCAACTGCACCGCCGCTCGC AGAGGCGACGGCAGCGCGGCTATGGTTGAATGGCACTGTAAGCAGCGCCA CAAGAGCCGCCTGTCACGCCGTAACTCATGGCGAAGCTACCAGCGGCCAG GAAACGGCTGATGCCGCGGCGTGTGAAGCGGTGACTACCAAAGCTGGTGC CATCAACGCGGCGGCGCCCAAGTTTGGCAGCGACGCGCCATGGGCGTTCA CCGCCGCCCCTTCCGCCACCGCGGCAGCCCAAGCCGCCCCGGAGAAGCTT GACCTATACGCCAACTTGGCGCCGAAGCTTCGGCTCCGGCTGGAGGCTCA CCGATCTCTGTACATGGGGTTGGCGCTCCCGTTGCGCGAGGGGCAAGCGC TGCCATCATCGCCGAAAACCACATTGGCGGCTCCTGAGCCGGAGCAGGTA GCGATAGCCGAACCAACGACGTTGGAGATGGTCACAAGACGAGCGGCACC GTGGGAAGCGGCGGCGGCACCACCGTTGGCGGCAACGGCAACATCGGCGG CAACACCACCATTGGCGGCGGCAATGGCAACATCGGCGGCAACACCACCG TTGGCGGCGGCAACGGCAACATCGGCAGCAACACCACCGTTGGCGGCAGC AGCGTCCCCGGCGGCGATGGGGGCTGCCCTTCTCCCCTTCCTCGAGCATT ACGCCTACGACGGTCGGGCCCACGCCGCCGGGCTGATCCACGGCGATCCG GTCTTCTCCAATTGCCTCAACACGAAGGAAGCGCGCGTCGTGCTGCTCGA CATGCGGGGCACGCTGGGCCCGCAGCCAACGACGGCGGGCGACGCGACGT ACGACTTGGCCAAGGTCTACCAGTCGCTGCGGGGTTATGACTTTGTGATC TTGGACCGCGCGGCAGAGGCACGGGGGGAGCCGGGCCGGGAAGCGCTGAC GGAGCTGCAGGTGGGTGGGCGGGCGGGTGCGTCGGTTTCGGCTTCGTTTG CGGCTGGGCGGCAGGGCTAGTTTGGGGGAGGGGAGAGGAGCCGTGCTGCT GCCTTATGGGATGGCTCGCTTTTCTCTTCTTCTTCCCCAAAACTGCCTTT TATAACCTGCTTACTGCTTCAGCGCCCGTTTGTTGCCTATTTGCCTAGAC AACATCCTTCAAATAAATAATAACAGGCGCCTATTCCTCCTTCTTTCCTC CATTTATCCGGCTGTCGTGCACTGGCTGCCTCCCTGCTTCCGTCCCCATC GTGCGCACGCGGACTCGCTGGCTTCCGGCAGGAGGAGTTCTGGTCATGGG TCTCCGCACACTACCCGACGGTGCGGCCATGCGACATCCGCGTCATCACG GCGTCACTCTTCCTGTCGGCCGTGCCGCTCCACACCGACCGTCGCCACCA GTTGGCGTTCTTGGCGACCTGCGAGGCCATCATGCGGGAGGAGGGGCTCC TCGTGCCACCAGTGAAACCGCACCCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig829:5432..7808-

>mRNA_P-wetherbeei_contig829.4.1 ID=mRNA_P-wetherbeei_contig829.4.1|Name=mRNA_P-wetherbeei_contig829.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2055bp|location=Sequence derived from alignment at P-wetherbeei_contig829:5432..7808- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGGCCGACGCTCCCTCCCTGTGTGGGAACCTGTGCGGACGACGAAGC
CGAAGTCGACCCGGTTGCCGACGGACCCTCTTCGTGCAACTGCGGCGGCG
CAGCTGCGGCCGCTGCCGCGGCCACTGCCGCCGCCGCGGGCGACGATGCT
GCCGCTGTTCGGATCCTGGCGGCTGCCGCCGTCCGATACGATGAGTTCGC
TCTACTGAAGCGGCCCGCGGCCGACGCCTACATCGGCTGGGGCGGCGGCC
GCGGGGCGATCGGCACGGCTTTTGACGTCAAGAAGGAGATCGGCTGGCAA
CTAAGCTGCAGCGGCACGAGCGATGGGGCGGGTGGCGCTGCCGGTGGTAG
TGGCGGTGTTAGCACACGCGCCGCTCGCCAAAACGACTTTGCCGCCAGCG
ATGCTAATACCGGCGGCTTCTGCCACTGCCGAACCGCGTCTGCTGTCCGC
ACCGGTTCCCGTCTGAGCCACAAAGAAGTTGCTGCGGCCGCCCCCGTCGC
CGTCGCTGCTGCTGCTGCTGCTGCCCCTGGCGTTGCTGGAACTGGTTGCG
CCGTTGCTGGCGGCGGCGGCGACACCGCCGACGGCACGCTGCCGCCGGGG
TTCGTCCGGCCGCGCTGCTTCAATCGCGTGACGCTTGTGGATGAAAAATA
CGTGCACAAGTCCGGCGCCCGTGAGCACATGACCGGAGAGATCTTCTTTT
ACCGGAACATTCCAGCGCCGGTCCGGGATATTTTCCCGGCAGTGGCGGAG
ATCCGGGACAGCGCCGACGTCCCGACGCCGTCCATCGTGCTGGAGCGGGT
CGACGGCGTTAGCTTCAGCCACCTCCTTGTGAGCCACTGCCTGACGCCGG
GCCGCCTGCGGGCGCTCCTGGCGGCGCTGCGGCGGCTGCACACGTGTCTA
CCGCCGCCGCGACTGCCGTCGCTCGTAGCAGCAACTGCACCGCCGCTCGC
AGAGGCGACGGCAGCGCGGCTATGGTTGAATGGCACTGTAAGCAGCGCCA
CAAGAGCCGCCTGTCACGCCGTAACTCATGGCGAAGCTACCAGCGGCCAG
GAAACGGCTGATGCCGCGGCGTGTGAAGCGGTGACTACCAAAGCTGGTGC
CATCAACGCGGCGGCGCCCAAGTTTGGCAGCGACGCGCCATGGGCGTTCA
CCGCCGCCCCTTCCGCCACCGCGGCAGCCCAAGCCGCCCCGGAGAAGCTT
GACCTATACGCCAACTTGGCGCCGAAGCTTCGGCTCCGGCTGGAGGCTCA
CCGATCTCTGTACATGGGGTTGGCGCTCCCGTTGCGCGAGGGGCAAGCGC
TGCCATCATCGCCGAAAACCACATTGGCGGCTCCTGAGCCGGAGCAGGTA
GCGATAGCCGAACCAACGACGTTGGAGATGGTCACAAGACGAGCGGCACC
GTGGGAAGCGGCGGCGGCACCACCGTTGGCGGCAACGGCAACATCGGCGG
CAACACCACCATTGGCGGCGGCAATGGCAACATCGGCGGCAACACCACCG
TTGGCGGCGGCAACGGCAACATCGGCAGCAACACCACCGTTGGCGGCAGC
AGCGTCCCCGGCGGCGATGGGGGCTGCCCTTCTCCCCTTCCTCGAGCATT
ACGCCTACGACGGTCGGGCCCACGCCGCCGGGCTGATCCACGGCGATCCG
GTCTTCTCCAATTGCCTCAACACGAAGGAAGCGCGCGTCGTGCTGCTCGA
CATGCGGGGCACGCTGGGCCCGCAGCCAACGACGGCGGGCGACGCGACGT
ACGACTTGGCCAAGGTCTACCAGTCGCTGCGGGGTTATGACTTTGTGATC
TTGGACCGCGCGGCAGAGGCACGGGGGGAGCCGGGCCGGGAAGCGCTGAC
GGAGCTGCAGGAGGAGTTCTGGTCATGGGTCTCCGCACACTACCCGACGG
TGCGGCCATGCGACATCCGCGTCATCACGGCGTCACTCTTCCTGTCGGCC
GTGCCGCTCCACACCGACCGTCGCCACCAGTTGGCGTTCTTGGCGACCTG
CGAGGCCATCATGCGGGAGGAGGGGCTCCTCGTGCCACCAGTGAAACCGC
ACCCG
back to top