mRNA_P-wetherbeei_contig8285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8285.1.1
Unique NamemRNA_P-wetherbeei_contig8285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A0G4EU89_VITBC (Rieske domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EU89_VITBC)

HSP 1 Score: 124 bits (312), Expect = 2.270e-29
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  418 DWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQLDSGP 693
            DW + WYPI   +F D+ +P    + GRP   WWD  Q  +HA +D CPHRLAPLSEGRV   G IECPYHGW F+G SG CT++PQ +  P
Sbjct:   94 DWLQQWYPIAVEKFTDRRVPHAMNIIGRPFAFWWDDQQEAWHAMKDVCPHRLAPLSEGRVTDEGHIECPYHGWQFDGESGACTVVPQKEGPP 185          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A6P0THD2_9CYAN (Rieske 2Fe-2S domain-containing protein (Fragment) n=1 Tax=Cyanothece sp. SIO2G6 TaxID=2607797 RepID=A0A6P0THD2_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 2.300e-29
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  418 DWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQLDSG 690
            DW   WYP+ +    DK  P +F L G+ LV+WW+P    +   ED CPHRL PLSEGR+N +G++ECPYHGW F G +GRC  IPQ   G
Sbjct:   30 DWAEAWYPLHYVTDLDKATPTRFTLLGQDLVIWWEPQAETWRVFEDRCPHRLVPLSEGRINESGQLECPYHGWSFSG-TGRCESIPQQPEG 119          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A4D9D536_9STRA (Rieske domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D536_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.950e-29
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  415 VDWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVA-GEIECPYHGWCFEGGSGRCTLIPQLDSG 690
            +DW+  W+PI F    DKT P+ F L   P+V+WWD    +++A +D CPHRLAPLSEGR++ + G IECPYHGW FEG  G+CT IPQL+ G
Sbjct:    8 IDWQAQWWPIAFESVTDKTRPYPFELLSIPIVIWWDNHVKRWNAVKDACPHRLAPLSEGRIDPSTGCIECPYHGWTFEGKLGKCTRIPQLEDG 100          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: UPI0019F6D7D7 (Rieske 2Fe-2S domain-containing protein n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0019F6D7D7)

HSP 1 Score: 122 bits (307), Expect = 7.160e-29
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  418 DWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQLDSGPT 696
            DW+  WYP+ +    DKT   +F L GR LVLWWDP  S + A ED CPHRLAPLSEGRVN AG +ECPYHGW F G  G C  IPQ  +G T
Sbjct:   48 DWKECWYPVHYLEDLDKTQLTRFTLLGRDLVLWWDPQASCWRAFEDQCPHRLAPLSEGRVNEAGLLECPYHGWAFSG-EGTCRFIPQQPTGGT 139          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: UPI0019E88724 (Rieske 2Fe-2S domain-containing protein n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019E88724)

HSP 1 Score: 121 bits (304), Expect = 1.500e-28
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  418 DWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQLDSG 690
            DW   WYP+ + R  D+  P +F L G  LV+WWD + S +    D CPHRLAPLS+GR+N AG++ECPYHGW F+G +GRC +IPQ  +G
Sbjct:   27 DWRAAWYPVFYERDLDRQRPNRFTLLGEDLVIWWDGLASAWRVFTDACPHRLAPLSQGRINEAGQLECPYHGWAFDG-AGRCQVIPQEPAG 116          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A4V0XDY0_9CYAN (Rieske domain-containing protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4V0XDY0_9CYAN)

HSP 1 Score: 120 bits (302), Expect = 2.360e-28
Identity = 51/92 (55.43%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  421 WERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQLDSGPT 696
            W   WYP+ F R  D++ P  F L G  LVLWWD   + + A ED CPHRL PLSEGR+N AG +ECPYHGW F+G SGRC  +PQ   G T
Sbjct:   18 WADQWYPVAFLRDLDRSRPTAFTLLGNDLVLWWDRAANSWQAFEDVCPHRLVPLSEGRINAAGHLECPYHGWSFDG-SGRCASLPQALEGAT 108          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A845ZMP6_9CYAN (Rieske 2Fe-2S domain-containing protein (Fragment) n=1 Tax=Moorena sp. SIO3E2 TaxID=2607829 RepID=A0A845ZMP6_9CYAN)

HSP 1 Score: 115 bits (288), Expect = 5.230e-28
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  418 DWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQ 678
            DWE +WYP+ +    DK+ P +F L  + +VLWWD  +  + A  D CPHRLAPLSEGR+N  G +ECPYHGW F G +G+C +IPQ
Sbjct:   30 DWEEVWYPVFYVEDLDKSQPTRFTLLEQDIVLWWDKHEQMWRAFVDQCPHRLAPLSEGRINQDGRLECPYHGWAFSG-TGQCEVIPQ 115          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A8J4ARJ1_9CHLO (Rieske domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARJ1_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 7.430e-28
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  409 GTVDWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQ 678
             T+DW   WYP+ FT+  DKT P +F+L   PLV+WWDP  + +   ED CPHRL PLSEGR+N AG +EC YHGW F    GRC ++PQ
Sbjct:   86 STIDWFNEWYPVAFTKDLDKTRPHRFMLLNIPLVIWWDPNAAAWRVLEDVCPHRLVPLSEGRINEAGLLECGYHGWAFNS-RGRCEVVPQ 174          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A8J4D1X7_9CHLO (Rieske domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D1X7_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.030e-27
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  415 VDWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQ 678
            +DW + WYP+ FT+  DKT P +FVL   PLV+WWDP  + +   ED CPHRL PLSEGR+N AG +EC YHGW F    GRC ++PQ
Sbjct:   85 IDWFKEWYPVAFTKDLDKTRPHRFVLLDVPLVIWWDPNAAAWRVLEDVCPHRLVPLSEGRINEAGLLECGYHGWAFNS-RGRCEVVPQ 171          
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Match: A0A836BXH7_9CHLO (Rieske domain-containing protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXH7_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 1.450e-27
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  406 EGTVDWERLWYPIIFTRFADKTLPFKFVLRGRPLVLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSGRCTLIPQ 678
            +G++D+   WYP+ FT+  DK+ P +FVL   PLV+WWDP    +   ED CPHRL PLSEGRVN AG +EC YHGW F   SGRC ++PQ
Sbjct:    9 DGSIDYFNEWYPVSFTKDLDKSKPHRFVLLDIPLVIWWDPNAKAWRVFEDVCPHRLVPLSEGRVNQAGMLECGYHGWAFSA-SGRCEVVPQ 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4EU89_VITBC2.270e-2954.35Rieske domain-containing protein n=1 Tax=Vitrella ... [more]
A0A6P0THD2_9CYAN2.300e-2951.65Rieske 2Fe-2S domain-containing protein (Fragment)... [more]
A0A4D9D536_9STRA5.950e-2954.84Rieske domain-containing protein n=2 Tax=Monodopsi... [more]
UPI0019F6D7D77.160e-2959.14Rieske 2Fe-2S domain-containing protein n=1 Tax=Sy... [more]
UPI0019E887241.500e-2852.75Rieske 2Fe-2S domain-containing protein n=1 Tax=Gl... [more]
A0A4V0XDY0_9CYAN2.360e-2855.43Rieske domain-containing protein n=1 Tax=Cyanobium... [more]
A0A845ZMP6_9CYAN5.230e-2852.87Rieske 2Fe-2S domain-containing protein (Fragment)... [more]
A0A8J4ARJ1_9CHLO7.430e-2854.44Rieske domain-containing protein n=1 Tax=Volvox af... [more]
A0A8J4D1X7_9CHLO1.030e-2755.68Rieske domain-containing protein n=1 Tax=Volvox re... [more]
A0A836BXH7_9CHLO1.450e-2754.95Rieske domain-containing protein n=2 Tax=Edaphochl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8285contigP-wetherbeei_contig8285:11..1212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog221359.RS9916_28049
PFAMsPaO,Rieske
Model size700
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.93e-28
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1G2NG@1117|Cyanobacteria,1GZ8R@1129|Synechococcus
DescriptionCOG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Cds size492
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.3179855-CDS-P-wetherbeei_contig8285:10..781683187031.3179855-CDS-P-wetherbeei_contig8285:10..78Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 11..78 -
1683187031.3289-CDS-P-wetherbeei_contig8285:300..3951683187031.3289-CDS-P-wetherbeei_contig8285:300..395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 301..395 -
1683187031.3433707-CDS-P-wetherbeei_contig8285:557..6591683187031.3433707-CDS-P-wetherbeei_contig8285:557..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 558..659 -
1683187031.35423-CDS-P-wetherbeei_contig8285:778..10051683187031.35423-CDS-P-wetherbeei_contig8285:778..1005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 779..1005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.3630738-UTR-P-wetherbeei_contig8285:1005..12121683187031.3630738-UTR-P-wetherbeei_contig8285:1005..1212Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8285 1006..1212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8285.1.1prot_P-wetherbeei_contig8285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8285 11..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8285.1.1

>prot_P-wetherbeei_contig8285.1.1 ID=prot_P-wetherbeei_contig8285.1.1|Name=mRNA_P-wetherbeei_contig8285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MNAWLFNILVLFLCLHTATAFMAAGLVAAMRRAGASCGPGNRQRVLSMTT
ASDTPLTKTTTFQATPEGTVDWERLWYPIIFTRFADKTLPFKFVLRGRPL
VLWWDPIQSKFHAAEDCCPHRLAPLSEGRVNVAGEIECPYHGWCFEGGSG
RCTLIPQLDSGPTG
back to top

mRNA from alignment at P-wetherbeei_contig8285:11..1212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8285.1.1 ID=mRNA_P-wetherbeei_contig8285.1.1|Name=mRNA_P-wetherbeei_contig8285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1202bp|location=Sequence derived from alignment at P-wetherbeei_contig8285:11..1212- (Phaeothamnion wetherbeei SAG_119_79)
CGATTGGTGCCCAGGGGCTGGTTGTTACAGCAGGAGTGCCCTCAGGCTTT CCAAGAGCCGCGTGAACTCAAGTCTGAAACCGGATTCAACGAGTTCAACC AACTCGAAGGAGAAGGGAACCCCTTCGCCCAGTTGCTGCGGCCGTCGCTC AGCCTGCTGCTTCCCTCTTGAAAACTCTAAGTGTGGCAGGGCATAACGCG GGAGAGAATGAATGCTTGGCTCTTCAACATTTTGGTGCTATTCTTATGCC TTCATACCGCCACCGCCTTCATGGCTGCCGGTCTAGTTGCTGCTATGAGA AGAGCAGGAGCAAGTTGCGGGCCTGGAAATCGCCAGAGGGTCTTGTCTAT GACAACTGCATCCGACACGCCCCTCACCAAAACAACTACATTTCAAGCGA CGCCGGAAGGCACTGTGGATTGGGAAAGACTCTGGTGAGAAAGACACGTT TTGGATTTGGCTCTATTCTTTGCACCATTATTCCCCCTTTTCACTCCATG TCATCGCTGACATGTTTTTCCTCCCACCCGTGCTGTGCGCGTTTTTGCTT CAGGTACCCGATCATCTTCACCCGCTTCGCCGACAAGACCCTGCCTTTCA AATTCGTTCTCCGTGGGCGGCCGTTGGTGCTCTGGTGGGACCCAATCCAG TCAAAGTGAGATGACAAGTAAATGCCTTTGCGTGGTCCCAGCCAAGCTGT GTACCCGCTGGTCATCGATAATTTCTCTAAAATCAAGATGCAAAGAGCCG CTAGCAGTTTCTTGTACCTGCTCGGTAGTCATTGTGTGCGACTACCGCAT CCCATTTCCAATTCCAGGTTTCATGCGGCAGAAGACTGCTGCCCACACCG GCTGGCGCCGCTCTCGGAGGGACGCGTGAACGTCGCCGGCGAGATTGAGT GTCCCTACCACGGTGAGCACGAAAAGGCATTATATGGCTTGCAATGCAGA TTGCTGACTTCTTTGTCGGTCAATCCCAACTCTCTCACGAATCGAAAGTG TGGAGGCAAATGGAGCGCCTGTCTCCTTTCCTGCAATAGATGTAGCTCGA CCAAAACATCTGCACTGCTTCGTTGTGTTTTCAGGAGAATGCGCTGTTTC TGCAACCACTTCCTCTCTCCCGACATCCCTGCAGGCTGGTGCTTTGAGGG CGGCAGCGGGCGGTGTACGCTGATTCCGCAGCTCGACAGCGGACCGACCG GC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8285:11..1212-

>mRNA_P-wetherbeei_contig8285.1.1 ID=mRNA_P-wetherbeei_contig8285.1.1|Name=mRNA_P-wetherbeei_contig8285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig8285:11..1212- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGCTTGGCTCTTCAACATTTTGGTGCTATTCTTATGCCTTCATAC
CGCCACCGCCTTCATGGCTGCCGGTCTAGTTGCTGCTATGAGAAGAGCAG
GAGCAAGTTGCGGGCCTGGAAATCGCCAGAGGGTCTTGTCTATGACAACT
GCATCCGACACGCCCCTCACCAAAACAACTACATTTCAAGCGACGCCGGA
AGGCACTGTGGATTGGGAAAGACTCTGGTACCCGATCATCTTCACCCGCT
TCGCCGACAAGACCCTGCCTTTCAAATTCGTTCTCCGTGGGCGGCCGTTG
GTGCTCTGGTGGGACCCAATCCAGTCAAAGTTTCATGCGGCAGAAGACTG
CTGCCCACACCGGCTGGCGCCGCTCTCGGAGGGACGCGTGAACGTCGCCG
GCGAGATTGAGTGTCCCTACCACGGCTGGTGCTTTGAGGGCGGCAGCGGG
CGGTGTACGCTGATTCCGCAGCTCGACAGCGGACCGACCGGC
back to top