mRNA_P-wetherbeei_contig8276.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8276.1.1
Unique NamemRNA_P-wetherbeei_contig8276.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8276.1.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.270e-11
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  328 GWTR-QDVVQDLCTWFCGLSPLERQQALAVEDSNWIRTYMVLYRKEHKGRRRKHGVTP-YEKDEIARIYEKFVRNEANR 558
            GW R +D+ +DL +WFC LS  ER QA+AV+D  WIR + VLYRK HK    + G  P +E++++ +IYE+  RNE NR
Sbjct:   10 GWKRREDMAEDLSSWFCQLSTQERLQAIAVDDVIWIRLFNVLYRK-HKSWMSQRGTPPTWEREKVRKIYERLQRNEQNR 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G847_ECTSI3.270e-1149.37NTP_transf_2 domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8276contigP-wetherbeei_contig8276:1358..2851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G847
PFAMsNTP_transf_2,PAP_assoc
Model size1136
Max annot lvl2759|Eukaryota
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.04e-12
EggNOG OGsCOG5260@1|root,KOG1906@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
Cds size855
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.9060972-UTR-P-wetherbeei_contig8276:1357..16361683187030.9060972-UTR-P-wetherbeei_contig8276:1357..1636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8276 1358..1636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.9244766-CDS-P-wetherbeei_contig8276:1636..18441683187030.9244766-CDS-P-wetherbeei_contig8276:1636..1844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8276 1637..1844 +
1683187030.946782-CDS-P-wetherbeei_contig8276:2204..28511683187030.946782-CDS-P-wetherbeei_contig8276:2204..2851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8276 2205..2851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8276.1.1prot_P-wetherbeei_contig8276.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8276 1637..2851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8276.1.1

>prot_P-wetherbeei_contig8276.1.1 ID=prot_P-wetherbeei_contig8276.1.1|Name=mRNA_P-wetherbeei_contig8276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
MSLRVPRFGGSGGIGHGWTRQDVVQDLCTWFCGLSPLERQQALAVEDSNW
IRTYMVLYRKEHKGRRRKHGVTPYEKDEIARIYEKFVRNEANRRQAGLVP
SAPAYIPSSQLLGASAAAEPSRSYSEPRIRLAEADAARAGGVSGAAVHGG
EAAAAVAMTAAAAVGGSSADATPSGAQSDGGGASAAGASAPSATLASGAA
DASARDPLPSGAPAPATATLGMKGDSSARDPLPPGAPAPATAALGMKGDS
SARDHPPAPAAAMDTAAAGVAASAAAALQAASEPA
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mRNA from alignment at P-wetherbeei_contig8276:1358..2851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8276.1.1 ID=mRNA_P-wetherbeei_contig8276.1.1|Name=mRNA_P-wetherbeei_contig8276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1494bp|location=Sequence derived from alignment at P-wetherbeei_contig8276:1358..2851+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGCGAGTCCATCGAGCTGGAGCCACCAGTGACAAAGAAAGTTTATGA
AGAGCAGGCTGGAGGCATCTTCTTCACTTGAGTCGATTAGGGGGCCCCAA
AGACTCGTTTGCCGGTGACAGAGGCAGAGACGGCCGTACTGGCCCCGACG
GGGAGCCACGCGGCCGTCGGTCGCTGCGTACGACGGTTCGCCTCGATTCC
TGGTGCTCAAGACACCGTCCTTAAACGAAAGCGCATTGGGCGCGACCAAT
TCGACGCGGGGCCGCGTGGCAGCCGCGTCATGTCGCTGCGGGTGCCGCGC
TTCGGCGGGAGCGGGGGAATCGGTCATGGGTGGACGCGGCAAGACGTCGT
CCAAGACCTCTGCACCTGGTTCTGCGGCCTGTCGCCCTTGGAGCGGCAGC
AGGCGCTCGCCGTGGAGGACTCGAACTGGATACGTACTTACATGGTCTTG
TACCGTAAGGAGCACAAGGGCCGAAGAAGAAAACACGGTGAGCATCGGGA
ACACAGCTCCTCCCTGCACCATGGAGGTGTCATTTCAACGCATTTATGAG
CAGAATTTTCCGGCGCGGCTTCGTTTTAAGGCGACTTCGTCTGCCTGCCG
GCCTTTGTCCTTCTCAGACGCCCGCGGGCAGTGCGGACGGCATCCGTTTC
TCTACCATCCACGGCTCATGCATCTCTGCCGTCGCAGCAGTTCCATCGAA
TCTACGGATCCCCAGAATTATCTGTTGCCCTCCTTCTGTGCCTTTTTCCA
GTAAGTCAACACCCCTCTTTCGCTGCCTTCTTGCCACTCCGTCATTTGCA
CGCGTTTTCCCTTGCTGTGGGTCATGTCGACTGCGCATTACACATAGGCG
TCACTCCGTATGAAAAGGACGAGATTGCGCGCATCTACGAGAAATTCGTG
CGAAACGAGGCGAATCGCCGACAGGCCGGTCTCGTACCGTCGGCTCCGGC
ATACATCCCTTCTTCGCAGCTGCTTGGAGCGTCAGCGGCGGCGGAGCCAT
CCAGAAGCTATTCGGAGCCACGCATCCGGCTTGCCGAAGCGGACGCCGCA
CGAGCTGGCGGCGTCAGCGGCGCCGCCGTTCACGGCGGCGAAGCGGCGGC
AGCGGTCGCGATGACGGCGGCTGCGGCAGTCGGAGGCAGCAGCGCTGACG
CCACGCCCTCTGGCGCCCAAAGCGACGGCGGCGGGGCCAGCGCGGCCGGT
GCCTCGGCGCCGTCTGCAACGTTGGCGTCAGGAGCGGCTGACGCATCGGC
GAGAGATCCCTTGCCCTCGGGGGCGCCGGCGCCGGCCACGGCGACACTCG
GGATGAAGGGTGACTCATCGGCGAGAGATCCCTTGCCCCCGGGGGCGCCA
GCGCCGGCCACGGCGGCACTCGGGATGAAGGGAGACTCATCGGCGCGGGA
TCATCCGCCGGCTCCGGCAGCAGCAATGGACACGGCCGCAGCTGGAGTGG
CGGCGTCGGCGGCGGCTGCTTTGCAGGCGGCGTCGGAGCCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8276:1358..2851+

>mRNA_P-wetherbeei_contig8276.1.1 ID=mRNA_P-wetherbeei_contig8276.1.1|Name=mRNA_P-wetherbeei_contig8276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig8276:1358..2851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTGCGGGTGCCGCGCTTCGGCGGGAGCGGGGGAATCGGTCATGG
GTGGACGCGGCAAGACGTCGTCCAAGACCTCTGCACCTGGTTCTGCGGCC
TGTCGCCCTTGGAGCGGCAGCAGGCGCTCGCCGTGGAGGACTCGAACTGG
ATACGTACTTACATGGTCTTGTACCGTAAGGAGCACAAGGGCCGAAGAAG
AAAACACGGCGTCACTCCGTATGAAAAGGACGAGATTGCGCGCATCTACG
AGAAATTCGTGCGAAACGAGGCGAATCGCCGACAGGCCGGTCTCGTACCG
TCGGCTCCGGCATACATCCCTTCTTCGCAGCTGCTTGGAGCGTCAGCGGC
GGCGGAGCCATCCAGAAGCTATTCGGAGCCACGCATCCGGCTTGCCGAAG
CGGACGCCGCACGAGCTGGCGGCGTCAGCGGCGCCGCCGTTCACGGCGGC
GAAGCGGCGGCAGCGGTCGCGATGACGGCGGCTGCGGCAGTCGGAGGCAG
CAGCGCTGACGCCACGCCCTCTGGCGCCCAAAGCGACGGCGGCGGGGCCA
GCGCGGCCGGTGCCTCGGCGCCGTCTGCAACGTTGGCGTCAGGAGCGGCT
GACGCATCGGCGAGAGATCCCTTGCCCTCGGGGGCGCCGGCGCCGGCCAC
GGCGACACTCGGGATGAAGGGTGACTCATCGGCGAGAGATCCCTTGCCCC
CGGGGGCGCCAGCGCCGGCCACGGCGGCACTCGGGATGAAGGGAGACTCA
TCGGCGCGGGATCATCCGCCGGCTCCGGCAGCAGCAATGGACACGGCCGC
AGCTGGAGTGGCGGCGTCGGCGGCGGCTGCTTTGCAGGCGGCGTCGGAGC
CGGCA
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