mRNA_P-wetherbeei_contig8263.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8263.1.1
Unique NamemRNA_P-wetherbeei_contig8263.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: D8LFB8_ECTSI (Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB8_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.970e-49
Identity = 189/535 (35.33%), Postives = 238/535 (44.49%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESGGDDG--------------------ESGSDADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGGQSSGIEAGQDGWVECSDDDENGDDESGWVDASDAEDDVGAKSPASAAAKRSKKG----SDTVVGEATGADGEAAPAADDAPPELVPLSEVAALEAKAASATVAAAAADSGSVAPAEKVTFAADTADGASSXXXXAAARDAAAASCKRQRPDMARVLTAEDFALIKRLKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESFAVEPSALEGYKKRRRATLEERLESVIRGREKFEANSHGGGLTNLEKARKKNFLMVRKGQRVRSKT--SGKQVRTRDNKGKKI-LGRDKRKKRRV 2026
            DE++PV+KAVA+NF+TERC G+V A+G+N++REV RR+PALL E     L V+L+  +K  DKSVVVAARG +N VRE +P+LL+ +DRGR HD T RPA+YG   V  GVDGA+LL  +E+G +  E+D                            E G + +G   XXXXXXXXXXXXXXX                 GG    G E GQ                                          KKG    S+T V +  G +G   P     P   VPL                                                           RQR D  R+L+AEDF  IK+LK  A                                                               +SF+V+P ALEGY+KRRRATLEERLE VIRGREKF+ANSH GGLTN EK RKKN+LM+RKG+ V+ KT    KQV  + N+G K+ + R+K+KK+R 
Sbjct:  374 DEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVVDLAAYSKHADKSVVVAARGFINFVRETYPSLLKSRDRGREHDITARPAKYGSRSVSEGVDGADLLTLHEQGLMPLEKDDXXXXXXXXXXXXXXXXXEEVPQLVSMPEDGMEVEGVEEXXXXXXXXXXXXXXXRPSKRARVSD------KGGKGKKGEEEGQG----------------------------------------RKKGVNFTSETKVADGPGPNGPVDPG----PTTKVPL-----------------------------------------------------------RQRVDSTRILSAEDFEKIKKLKHQAATAAKQRTHKRKHNIGGSDSEDSDDGGEEG---------------------------------QSFSVDPRALEGYRKRRRATLEERLEGVIRGREKFQANSHAGGLTNAEKERKKNYLMIRKGKAVKHKTRMGEKQVMAQKNRGGKVQMSRNKQKKKRT 766          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A835Z7A4_9STRA (Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A4_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.530e-43
Identity = 160/519 (30.83%), Postives = 202/519 (38.92%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESGGDDGESGSDADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGGQSSGIEAGQDGWVECSDDDENGDDESGWVDASDAEDDVGAKSPASAAAKRSKKGSDTVVGEATGADGEAAPAADDAPPELVPLSEVAALEAKAASATVAAAAADSGSVAPAEKVTFAADTADGASSXXXXAAARDAAAASCKRQRPDMARVLTAEDFALIKRLKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESFAVEPSALEGYKKRRRATLEERLESVIRGREKFEANSHGGGLTNLEKARKKNFLMVRKGQRVRSKTSGKQVR----TRDNKG------KKI-LGRDKRKKRRV 2026
            D++LP++KA+AHN +TERCSGDV AVG+N+++E++RRVPA L E      A +++   KSRDKSVV+AARG  NLVRE+HP LLR +DRG+ HD + +PA+YGE +VL GVDGAELL   + G LQ  ++GE   +DG                                                                                                                              + L ++  ++                                                      R D  R+LT EDF  IK+LKA A                                                                S AV  + LEGYKKRRRATLEERLESV++GREKFE N+HGGGLTN EK RKKNFLMVRKG+ +R K   +QVR     R  KG      KK+ L  DKRKKRR 
Sbjct:  372 DDILPIIKAIAHNMVTERCSGDVMAVGINSIKEIIRRVPATLSEDGMDAFAQDIAAYAKSRDKSVVIAARGFTNLVREVHPRLLRARDRGKHHDISAQPAQYGEQKVLEGVDGAELLTLADAGILQGADEGEKEEEDGME----------------------------------------------------------------------------------------------------------------------------MDLRKIQVIQ----------------------------------------------------TMRADATRILTQEDFDKIKKLKAKAAEQRLDPRFRRKRKSTAQDVLSDDEEEMDTNP--------------------------------SLAVNAADLEGYKKRRRATLEERLESVLKGREKFEQNTHGGGLTNTEKQRKKNFLMVRKGRNLREKQK-EQVRGGVAKRGPKGAKGQQQKKVQLKHDKRKKRRT 681          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A5D6XJK4_9STRA (Protein SDA1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJK4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.170e-32
Identity = 75/130 (57.69%), Postives = 96/130 (73.85%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEE-GRLQPEE 889
            +ELLP++K++AHNFITERCS +V AVG+NAVREV RRVP +L       L  +L   +KSRDKS V+AARGVLNL+RE+HPTLL+ K+RG+ HD T +P ++GE+    GVDG ELL+  E  GR   EE
Sbjct:  369 EELLPLVKSIAHNFITERCSSEVIAVGINAVREVFRRVPLVLECEGMDVLIADLIMYSKSRDKSAVMAARGVLNLIREIHPTLLKRKERGKFHDGTAKPKQFGELVAAEGVDGVELLEEAEAAGRFDGEE 498          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A024UGF4_9STRA (Protein SDA1 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024UGF4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.520e-31
Identity = 77/150 (51.33%), Postives = 105/150 (70.00%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELL-QAYEEGRLQPEEDGESGGDDGE---SGSDADG 940
            +EL+PV+K +A++FI ERC+ +V AVG+NAVREV  RVP ++ EP    L  +L    KSRDK+ V+AARGVLNL+RE+HP+LL+ KDRG+ H+ T RP  +GE R   GVDGAELL +A   GR   E++G+    D E   +G ++DG
Sbjct:  367 EELMPVVKTIANSFIVERCASEVIAVGINAVREVFARVPLVMDEPGMDDLIQDLIMFNKSRDKTCVIAARGVLNLIREIHPSLLKRKDRGKFHNETARPKAFGEYRAAEGVDGAELLMEAEAAGRFDYEDNGDGWAVDEEMLDAGDESDG 516          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A067C678_SAPPC (Protein SDA1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C678_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 1.970e-31
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESG 904
            +E++P+++ +A++FI ERCS +V AVG+N+VRE+  R+P ++ E     L  +L    KSRDK+ V+AARGVLNLVRE+HP+LL+ KDRG+ HDA  RP  +GE+R L GV+GAELL   E      EED E G
Sbjct:  367 EEIMPIVRTIANSFIVERCSSEVIAVGINSVREIFARIPLVMEEEGMDALLQDLIMFNKSRDKTTVIAARGVLNLVRELHPSLLKRKDRGKFHDAAARPKAFGELRALEGVEGAELLMQAEAAGRFDEEDNEDG 500          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A2P4WVK5_9STRA (Protein SDA1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVK5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.660e-31
Identity = 71/146 (48.63%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESGGDDGESGSDADG 940
            +ELLP++K++AHNF+TERCS +V AVG+N++RE+ RRVP LL       L  +L    ++RDK++V+AARGVLNL+R++HP LL+ KDRG+ H+   +P R+GE+    GVDGA+LL   E       ED + G +   S SD DG
Sbjct:   88 EELLPIVKSIAHNFVTERCSSEVIAVGINSLRELFRRVPLLLECEGMDVLVSDLVQYNRARDKTIVMAARGVLNLIRDIHPALLKRKDRGKFHNDAAKPHRFGELVASEGVDGADLLAEAEAAGRFDGEDNKDGWEVASSTSDEDG 233          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A6G0X6R3_9STRA (Protein SDA1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6R3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.870e-31
Identity = 73/145 (50.34%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESGGDDGESGSDAD 937
            +E++PV+K +A++FI ERCS +V AVG+NAVRE+  RVP ++ E     L  +L    KSRDK+ V+AARGVLNL+RE+HP+LL+ KDRG+ H+ T RP  +GE+R L GV+GAELL       +Q E  G   G+D + G D D
Sbjct:  367 EEIMPVVKTIANSFIVERCSSEVIAVGINAVREIFARVPLVMEEDGMDALIQDLIMFNKSRDKTCVIAARGVLNLIREVHPSLLKRKDRGKFHNETARPKAFGELRALEGVEGAELL-------MQAEAAGRFDGEDNQDGWDID 504          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: I2CP60_NANGC (Protein SDA1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP60_NANGC)

HSP 1 Score: 136 bits (343), Expect = 1.980e-30
Identity = 69/149 (46.31%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  434 NSQRITLPMMLMPTGSVLFFPKQDELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQ 880
            N Q +T  +  +  G     P  +E+ P+LK +A+ F+ +RCS +V AVG+NA+RE++ RVPA+L E +      +++   K +DKS+V+AAR  LN VR+++P LL+ KDRG+ H    +PA YGE++VL GV+GAELLQA+EEGRL+
Sbjct:  368 NQQHVTKTLAYLIQGCHDLIPP-EEIHPLLKNIANAFVADRCSSEVIAVGINALREIITRVPAVLHEEEMDAFVQDIALYYKKKDKSIVMAARSFLNAVRDLYPALLQRKDRGKHHIVGQKPAPYGELKVLDGVEGAELLQAWEEGRLE 515          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: F0WX60_9STRA (Protein SDA1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX60_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.000e-30
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYE-EGRLQPEEDGESGGDDGESGSDAD 937
            DE+L V+K++A NFITERCS +V AVG+NA+RE+ RRVP LL   D +    +L   +K++DK VV+AARGVLNL+RE HPTLLR KDRG+ HD   RP  +GE   +  VDGAELL A E  GR    ED       G++GSD+D
Sbjct:  370 DEVLQVVKSIATNFITERCSSEVIAVGINALREIFRRVPLLLECEDMEVFTSDLIMYSKAKDKGVVMAARGVLNLIRECHPTLLRRKDRGKHHDRAARPRPFGESTAVESVDGAELLAAAEASGRFSNVEDSLEV-KSGKNGSDSD 514          
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Match: A0A485LNP1_9STRA (Protein SDA1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNP1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.020e-30
Identity = 70/134 (52.24%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  503 DELLPVLKAVAHNFITERCSGDVAAVGMNAVREVVRRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLRGKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESG 904
            +E++PV+K +A++FI ERC+ +V AVG+N+VRE+  RVP ++ E     L  +L    KSRDK+ V+AARGVLNL+RE+HP+LL+ KDRG+ H+ T RP  +GEVR L GVDGAELL   E       ED E G
Sbjct:  367 EEIMPVVKTIANSFIVERCASEVIAVGINSVREIFARVPLVMEEDGMDALLQDLIMFNKSRDKTCVIAARGVLNLIREIHPSLLKRKDRGKFHNETARPKAFGEVRALEGVDGAELLMEAEAAGRFDNEDIEDG 500          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8263.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB8_ECTSI1.970e-4935.33Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z7A4_9STRA1.530e-4330.83Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A5D6XJK4_9STRA2.170e-3257.69Protein SDA1 n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A024UGF4_9STRA1.520e-3151.33Protein SDA1 n=8 Tax=Aphanomyces TaxID=100860 RepI... [more]
A0A067C678_SAPPC1.970e-3151.49Protein SDA1 n=4 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A2P4WVK5_9STRA3.660e-3148.63Protein SDA1 n=1 Tax=Phytophthora palmivora var. p... [more]
A0A6G0X6R3_9STRA4.870e-3150.34Protein SDA1 n=1 Tax=Aphanomyces euteiches TaxID=1... [more]
I2CP60_NANGC1.980e-3046.31Protein SDA1 (Fragment) n=1 Tax=Nannochloropsis ga... [more]
F0WX60_9STRA2.000e-3054.11Protein SDA1 n=1 Tax=Albugo laibachii Nc14 TaxID=8... [more]
A0A485LNP1_9STRA2.020e-3052.24Protein SDA1 n=1 Tax=Aphanomyces stellatus TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8263contigP-wetherbeei_contig8263:31..2129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFB8
Preferred nameSDAD1
PFAMsNUC130_3NT,SDA1
Model size2099
Max annot lvl2759|Eukaryota
KEGG koko:K14856
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007089,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010564,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0033750,GO:0034097,GO:0034613,GO:0042221,GO:0042254,GO:0042273,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045931,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090068,GO:1900087,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990823,GO:1990830,GO:2000045
Exons1
Evalue3.34e-50
EggNOG OGsKOG2229@1|root,KOG2229@2759|Eukaryota
Descriptionribosomal large subunit export from nucleus
Cds size1572
COG categoryS
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.3110402-UTR-P-wetherbeei_contig8263:30..4871683187030.3110402-UTR-P-wetherbeei_contig8263:30..487Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8263 31..487 +
1683187030.3441484-UTR-P-wetherbeei_contig8263:2059..21291683187030.3441484-UTR-P-wetherbeei_contig8263:2059..2129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8263 2060..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.3278859-CDS-P-wetherbeei_contig8263:487..20591683187030.3278859-CDS-P-wetherbeei_contig8263:487..2059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8263 488..2059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8263.1.1prot_P-wetherbeei_contig8263.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8263 488..2059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8263.1.1

>prot_P-wetherbeei_contig8263.1.1 ID=prot_P-wetherbeei_contig8263.1.1|Name=mRNA_P-wetherbeei_contig8263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=524bp
MMLMPTGSVLFFPKQDELLPVLKAVAHNFITERCSGDVAAVGMNAVREVV
RRVPALLWEPDFQPLAVELSGMTKSRDKSVVVAARGVLNLVREMHPTLLR
GKDRGRAHDATTRPARYGEVRVLGGVDGAELLQAYEEGRLQPEEDGESGG
DDGESGSDADGSDDSGESISGSENGGESDSDNGEEEEGEEEEAEASGGGQ
SSGIEAGQDGWVECSDDDENGDDESGWVDASDAEDDVGAKSPASAAAKRS
KKGSDTVVGEATGADGEAAPAADDAPPELVPLSEVAALEAKAASATVAAA
AADSGSVAPAEKVTFAADTADGASSAAAEAAARDAAAASCKRQRPDMARV
LTAEDFALIKRLKAAAAADAKDPRSRKRKRSRVEEVAASAAAAAAAKNGG
DAGAAAAAAVAGNDEEGSDGEDGDGGHGGESFAVEPSALEGYKKRRRATL
EERLESVIRGREKFEANSHGGGLTNLEKARKKNFLMVRKGQRVRSKTSGK
QVRTRDNKGKKILGRDKRKKRRV*
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mRNA from alignment at P-wetherbeei_contig8263:31..2129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8263.1.1 ID=mRNA_P-wetherbeei_contig8263.1.1|Name=mRNA_P-wetherbeei_contig8263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2099bp|location=Sequence derived from alignment at P-wetherbeei_contig8263:31..2129+ (Phaeothamnion wetherbeei SAG_119_79)
AGATGCTTGGAGGTGCATTGCTGCTTTTGCTGTTGCGGGCTGCTTCTGTT CACGTTACGTTGTTTGGTCGTATTGCTCTTTTTGCCATGTTGCGTGCCGT ATTGTTTCCTTTTGCTCGTACTGTCAATCCCTGTGACTTTTGGCCCTTAT ATTCCGTCCTCCATTTAACGCACATTTCCCGCTCTCTCGCTCCCTTATTT CAGTGTTCTTTCTGTATTTATTTCGAGCTAGGAGCTTCTGCGGTTGTCCA CGGCTCCGCCGGTGCTATCCTTCCTAGCTTACTTTTTCCCACCCGCCAGC CCCCCCACCCCTGAGCTAAGAAAGAAAATCCGAAAATTCGGAAAATCTTT ATGGGTACTGAGACTCATGCGCTGAAACAGCACTTATGATACCCGTAATC TGAATGCTTCTGCCACTCCCCTAGCAGAACCTTAATTCACAACGCATAAC GCTTCCCATGATGCTCATGCCTACCGGATCCGTCCTTTTTTTCCCCAAAC AGGACGAGCTGCTGCCGGTGCTGAAGGCCGTTGCCCACAACTTCATCACG GAGCGCTGCTCCGGCGACGTCGCCGCCGTTGGCATGAACGCCGTCCGCGA GGTCGTTCGCCGCGTCCCGGCGCTACTCTGGGAGCCCGATTTTCAGCCGC TGGCCGTTGAACTGTCAGGCATGACAAAGAGCCGCGACAAGTCGGTCGTG GTGGCGGCGCGCGGCGTGCTGAACCTGGTGCGGGAGATGCACCCAACGCT GCTGCGCGGCAAGGACCGCGGCCGGGCGCACGACGCGACGACGCGACCGG CGCGGTACGGCGAGGTGCGTGTGCTGGGCGGTGTCGATGGCGCCGAGCTG CTGCAGGCGTACGAGGAGGGGCGACTGCAGCCGGAGGAGGACGGGGAAAG CGGCGGCGACGACGGCGAGAGCGGCAGCGACGCCGACGGCAGCGACGACA GTGGAGAGAGCATCAGCGGCAGCGAAAACGGCGGCGAGAGTGACAGTGAC AACGGAGAGGAGGAGGAAGGAGAGGAGGAAGAAGCGGAGGCGAGCGGCGG AGGACAAAGCAGTGGCATCGAGGCGGGCCAGGACGGCTGGGTCGAGTGCA GCGACGACGACGAGAACGGTGACGACGAGAGCGGCTGGGTGGACGCCAGC GACGCCGAGGACGACGTTGGCGCAAAAAGCCCTGCCTCTGCTGCGGCGAA GAGGAGCAAAAAGGGCAGTGACACGGTGGTGGGTGAGGCGACGGGCGCAG ATGGCGAGGCTGCGCCTGCTGCCGACGACGCACCGCCGGAGCTCGTCCCG CTGAGCGAGGTCGCGGCATTGGAGGCAAAGGCGGCATCTGCTACCGTTGC CGCCGCTGCTGCCGATTCTGGCTCGGTCGCTCCGGCCGAGAAGGTGACGT TTGCGGCAGATACTGCAGATGGCGCGTCGTCGGCGGCGGCGGAGGCTGCG GCTAGAGACGCGGCGGCGGCGTCATGCAAGCGGCAACGGCCCGACATGGC ACGTGTCCTCACGGCAGAGGACTTTGCGCTCATTAAGCGGCTCAAGGCGG CGGCCGCGGCCGACGCCAAGGACCCGCGCTCCCGCAAGCGGAAGCGCTCG CGGGTGGAAGAGGTGGCGGCGTCGGCGGCCGCGGCCGCAGCGGCAAAGAA TGGAGGCGACGCCGGCGCTGCCGCCGCCGCAGCAGTGGCCGGAAACGACG AGGAAGGCTCTGACGGGGAAGACGGCGACGGCGGCCACGGCGGCGAGTCG TTTGCCGTTGAGCCGTCGGCGCTAGAGGGGTATAAAAAGCGGCGGCGCGC AACGCTGGAGGAGCGGCTGGAATCGGTCATCCGCGGCCGCGAGAAGTTCG AGGCCAACAGCCACGGCGGTGGCCTGACCAACCTGGAGAAGGCGCGCAAG AAGAACTTCCTCATGGTGCGGAAGGGCCAGCGGGTGCGGTCGAAGACGTC CGGCAAGCAGGTTCGCACGCGGGATAACAAGGGCAAGAAGATCCTCGGCC GCGACAAGCGCAAGAAGCGCCGTGTATAGACATTAGGGTTATGCGGAAGG AGAGAAGGAAGGTGGGAGGAGGACGTGGAAGGATTACCGCAGCTTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8263:31..2129+

>mRNA_P-wetherbeei_contig8263.1.1 ID=mRNA_P-wetherbeei_contig8263.1.1|Name=mRNA_P-wetherbeei_contig8263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1572bp|location=Sequence derived from alignment at P-wetherbeei_contig8263:31..2129+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTCATGCCTACCGGATCCGTCCTTTTTTTCCCCAAACAGGACGA
GCTGCTGCCGGTGCTGAAGGCCGTTGCCCACAACTTCATCACGGAGCGCT
GCTCCGGCGACGTCGCCGCCGTTGGCATGAACGCCGTCCGCGAGGTCGTT
CGCCGCGTCCCGGCGCTACTCTGGGAGCCCGATTTTCAGCCGCTGGCCGT
TGAACTGTCAGGCATGACAAAGAGCCGCGACAAGTCGGTCGTGGTGGCGG
CGCGCGGCGTGCTGAACCTGGTGCGGGAGATGCACCCAACGCTGCTGCGC
GGCAAGGACCGCGGCCGGGCGCACGACGCGACGACGCGACCGGCGCGGTA
CGGCGAGGTGCGTGTGCTGGGCGGTGTCGATGGCGCCGAGCTGCTGCAGG
CGTACGAGGAGGGGCGACTGCAGCCGGAGGAGGACGGGGAAAGCGGCGGC
GACGACGGCGAGAGCGGCAGCGACGCCGACGGCAGCGACGACAGTGGAGA
GAGCATCAGCGGCAGCGAAAACGGCGGCGAGAGTGACAGTGACAACGGAG
AGGAGGAGGAAGGAGAGGAGGAAGAAGCGGAGGCGAGCGGCGGAGGACAA
AGCAGTGGCATCGAGGCGGGCCAGGACGGCTGGGTCGAGTGCAGCGACGA
CGACGAGAACGGTGACGACGAGAGCGGCTGGGTGGACGCCAGCGACGCCG
AGGACGACGTTGGCGCAAAAAGCCCTGCCTCTGCTGCGGCGAAGAGGAGC
AAAAAGGGCAGTGACACGGTGGTGGGTGAGGCGACGGGCGCAGATGGCGA
GGCTGCGCCTGCTGCCGACGACGCACCGCCGGAGCTCGTCCCGCTGAGCG
AGGTCGCGGCATTGGAGGCAAAGGCGGCATCTGCTACCGTTGCCGCCGCT
GCTGCCGATTCTGGCTCGGTCGCTCCGGCCGAGAAGGTGACGTTTGCGGC
AGATACTGCAGATGGCGCGTCGTCGGCGGCGGCGGAGGCTGCGGCTAGAG
ACGCGGCGGCGGCGTCATGCAAGCGGCAACGGCCCGACATGGCACGTGTC
CTCACGGCAGAGGACTTTGCGCTCATTAAGCGGCTCAAGGCGGCGGCCGC
GGCCGACGCCAAGGACCCGCGCTCCCGCAAGCGGAAGCGCTCGCGGGTGG
AAGAGGTGGCGGCGTCGGCGGCCGCGGCCGCAGCGGCAAAGAATGGAGGC
GACGCCGGCGCTGCCGCCGCCGCAGCAGTGGCCGGAAACGACGAGGAAGG
CTCTGACGGGGAAGACGGCGACGGCGGCCACGGCGGCGAGTCGTTTGCCG
TTGAGCCGTCGGCGCTAGAGGGGTATAAAAAGCGGCGGCGCGCAACGCTG
GAGGAGCGGCTGGAATCGGTCATCCGCGGCCGCGAGAAGTTCGAGGCCAA
CAGCCACGGCGGTGGCCTGACCAACCTGGAGAAGGCGCGCAAGAAGAACT
TCCTCATGGTGCGGAAGGGCCAGCGGGTGCGGTCGAAGACGTCCGGCAAG
CAGGTTCGCACGCGGGATAACAAGGGCAAGAAGATCCTCGGCCGCGACAA
GCGCAAGAAGCGCCGTGTATAG
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