mRNA_P-wetherbeei_contig8257.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8257.1.1
Unique NamemRNA_P-wetherbeei_contig8257.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: D7FWB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB6_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.080e-37
Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASSRG-----KDRLQQLVDWCGSESFAG 297
            QIAGIILD++ARG+KKH+WFSI+ DL+LDA+RDLKDVGCHI VIDGC+ LDA+SSKGLG S++++ G LF+TY+ LAS R      K RL+QL+DWCG + F G
Sbjct:  135 QIAGIILDSWARGRKKHVWFSISNDLKLDAQRDLKDVGCHINVIDGCQGLDAASSKGLGMSSSSKHGCLFSTYSTLASGRPNAVGKKTRLEQLIDWCGGKDFEG 238          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A835YXT2_9STRA (P-loop containing NTP hydrolase pore-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.100e-36
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTY-TMLASSRG------KDRLQQLVDWCGSESFAG 297
            QIAGIILD +ARG+ KH+W SIA DLR DAERDL D+GCHI VIDGC+ALDA+SSKGLG+ ++ + GVLFTTY T+++S +G      + RLQQ+VDWCG   F G
Sbjct:   82 QIAGIILDNYARGRTKHVWLSIASDLRADAERDLADIGCHINVIDGCQALDAASSKGLGTGSSARDGVLFTTYSTLISSGKGTSGGNKRSRLQQIVDWCGGHEFDG 187          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A6H5JM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM72_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.220e-35
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRA------LDASSSKGLGSSAATQCGVLFTTYTMLASSRG-----KDRLQQLVDWCGSESFAG 297
            QIAGIILD++ARG+KKHIW SI+ DL+LDA+RDLKDVGCHI VIDGC+A      LDA+SSKGLG S++++ G LF+TY+ LAS R      K RL QL+DWCG + F G
Sbjct:  135 QIAGIILDSWARGRKKHIWCSISNDLKLDAQRDLKDVGCHINVIDGCQAWRAGKGLDAASSKGLGMSSSSKHGCLFSTYSTLASGRSNAVGKKTRLDQLIDWCGGKEFEG 244          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A1V9Y6D2_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y6D2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.350e-31
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASS---RGKDRLQQLVDWCG 279
            Q+AGII D   RG+KKH+WFS++ DLR DAERDL+D+GCH+ VIDGC+ LD +S+KGLG  AA+  GVL++TY  L S      K RLQQ+V WCG
Sbjct:  119 QLAGIIFDNLCRGRKKHLWFSVSNDLRADAERDLRDIGCHVPVIDGCQQLDKASAKGLGKGAASSAGVLYSTYATLTSQLSHASKSRLQQIVQWCG 214          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A7S4FKB4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FKB4_9EUGL)

HSP 1 Score: 114 bits (284), Expect = 4.050e-30
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLAS--------SRGKDRLQQLVDWCGSESFAG 297
            QIAGII D  ARG+ +HIWFS + DLR DAERDLKD+GCH+ VI+GC+ LD    KGLG S+  + GVLF+TY  L S        + G+ RL QL+ WCG + F G
Sbjct:   21 QIAGIIFDNAARGRMRHIWFSTSTDLRQDAERDLKDIGCHLTVINGCKQLD-QERKGLGLSSTVKEGVLFSTYMTLISMVTRGGPGNAGQSRLDQLIAWCGGDEFDG 126          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: UPI00077AAF76 (protein strawberry notch homolog 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AAF76)

HSP 1 Score: 111 bits (277), Expect = 6.960e-29
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASSRGK-----DRLQQLVDWCGSESFAG 297
            +I+GI+LD FARG+ +H+WFSI+ DLRLDA+RDL+D+GC   VIDGC+ LD   ++  G SA  + GV+F+TY  L SS  K      RLQQL++WCG E F G
Sbjct:   14 EISGIVLDNFARGRCRHVWFSISADLRLDAQRDLQDIGCFAKVIDGCQQLD-KETRVFGLSADFKEGVVFSTYATLVSSVQKGTNRQSRLQQLLNWCGGEQFTG 116          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: UPI001F04554F (protein FORGETTER 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04554F)

HSP 1 Score: 117 bits (294), Expect = 1.180e-28
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLAS-----SRGKDRLQQLVDWCGSESFAG 297
            QIAGIILD FARG+ KH+WFSI+ DLRLDA+RDL+D+GC++ VIDGC+ LD   ++  G S   + GV+F+TY  L S      + + RLQQL+DWCG  SF G
Sbjct:  145 QIAGIILDNFARGRTKHVWFSISSDLRLDAQRDLQDIGCYLKVIDGCQQLD-KETRVFGLSIDFKEGVVFSTYATLVSCTQRAGKSRSRLQQLIDWCGGSSFDG 247          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A6S7I364_PARCT (FORGETTER 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I364_PARCT)

HSP 1 Score: 117 bits (292), Expect = 1.840e-28
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASS-----RGKDRLQQLVDWCGSESFAG 297
            QIAGIILD F+RG+ +H+WFSI+ DLRLDA+RDL+D+GC+I VIDGC+ LD   ++  G  A  + GV+F+TY  L SS     R + RLQQL+DWCG  +F G
Sbjct:  120 QIAGIILDNFSRGRTRHVWFSISSDLRLDAQRDLQDIGCYIKVIDGCQQLD-KETRVFGLPADFKEGVVFSTYATLVSSVNRAGRSQSRLQQLIDWCGGTNFDG 222          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: W4FGP1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGP1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.990e-28
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASSRG---KDRLQQLVDWCGSESFAG 297
            Q+AGI+L+   RG+KKH+WFS++ DLR+DAERDL+D+GCH+ VIDGC  L+   +KG G S+ T  GVL++TY+ L S+     K RL Q+V WCG  +F G
Sbjct:  130 QLAGIVLENLCRGRKKHLWFSVSNDLRVDAERDLRDIGCHVDVIDGCHQLEKEKAKGFGMSSKT--GVLYSTYSTLTSNYSHPTKSRLLQIVAWCGGANFDG 229          
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Match: A0A2B4RQM1_STYPI (Protein strawberry notch-like 1 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RQM1_STYPI)

HSP 1 Score: 115 bits (289), Expect = 5.590e-28
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRALDASSSKGLGSSAATQCGVLFTTYTMLASSRGK-----DRLQQLVDWCGSESFAG 297
            QI+GI+LD FARG+ KH+WFSI+ DLRLDA+RDL+D+GC + VIDGC+ LD   ++  G  A  + GV+F+TY  L SS  K      RLQQL+DWCG E F+G
Sbjct:  138 QISGILLDNFARGRCKHVWFSISADLRLDAQRDLQDIGCFVKVIDGCQQLD-KETRVFGLPADFKEGVIFSTYATLVSSVQKGTNRQSRLQQLIDWCGGEHFSG 240          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8257.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWB6_ECTSI1.080e-3765.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXT2_9STRA6.100e-3663.21P-loop containing NTP hydrolase pore-1-domain-cont... [more]
A0A6H5JM72_9PHAE5.220e-3562.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9Y6D2_9STRA2.350e-3159.38Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S4FKB4_9EUGL4.050e-3054.21Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI00077AAF766.960e-2953.85protein strawberry notch homolog 1-like n=1 Tax=Ac... [more]
UPI001F04554F1.180e-2855.77protein FORGETTER 1-like n=1 Tax=Xenia sp. Carnegi... [more]
A0A6S7I364_PARCT1.840e-2855.77FORGETTER 1-like n=1 Tax=Paramuricea clavata TaxID... [more]
W4FGP1_9STRA2.990e-2852.94Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A2B4RQM1_STYPI5.590e-2855.77Protein strawberry notch-like 1 n=2 Tax=Pocillopor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8257contigP-wetherbeei_contig8257:423..1417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWB6
PFAMsAAA_34,Helicase_C_4
Model size297
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.77e-38
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size297
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.6888556-CDS-P-wetherbeei_contig8257:422..5921683187029.6888556-CDS-P-wetherbeei_contig8257:422..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8257 423..592 -
1683187029.7027426-CDS-P-wetherbeei_contig8257:1051..11451683187029.7027426-CDS-P-wetherbeei_contig8257:1051..1145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8257 1052..1145 -
1683187029.7158287-CDS-P-wetherbeei_contig8257:1384..14171683187029.7158287-CDS-P-wetherbeei_contig8257:1384..1417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8257 1385..1417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8257.1.1prot_P-wetherbeei_contig8257.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8257 423..1417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8257.1.1

>prot_P-wetherbeei_contig8257.1.1 ID=prot_P-wetherbeei_contig8257.1.1|Name=mRNA_P-wetherbeei_contig8257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
QIAGIILDAFARGQKKHIWFSIAPDLRLDAERDLKDVGCHIGVIDGCRAL
DASSSKGLGSSAATQCGVLFTTYTMLASSRGKDRLQQLVDWCGSESFAG
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mRNA from alignment at P-wetherbeei_contig8257:423..1417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8257.1.1 ID=mRNA_P-wetherbeei_contig8257.1.1|Name=mRNA_P-wetherbeei_contig8257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=995bp|location=Sequence derived from alignment at P-wetherbeei_contig8257:423..1417- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCGCCGGCATCATCCTCGACGCGTTCGCGGTGAGAAAGAGAGTGGA AGCCGGGCTCCTGCTCGTAATGCGTCATTTCTCTACACTTGTCCCGTCTT GGAGCTGCTGGCATCTTGCAGCGCCGACAGGCTTTGGCATGCAGTGGTAA GAGATTGCGTTGTGCGTCCATTCACATCCCTCAGGATTTTATAAGCCAGC GGTTCCTCTTCCGCGCGTCTGGATTGTCCTTCCGCCCTCCAAACTTTTCT TGTCTACTTCAACGGCGAGCAGCGCGGCCAGAAGAAGCACATCTGGTTCT CCATCGCGCCGGACCTGCGACTGGATGCCGAGCGGGATCTGAAGGATGTT GGCTGCCACATCGGCGGTGCGTATTCGTTCGGTTTTCGGTAATTTTCTGC TCGATGTTACAATGCATGTTCCGTTTTTCGTTCCGCTTGTTCATTGTGCC CTTTTTCAGTTCATTCCCTCGTCGTAATATGTTTGTTAGCTGTCGGTAGG ATAGAGATCTTTCTAGCAGGGCCGGTCCTGGCCAGGCGGCAGGAACACTC CCTTCAATGCGCCCACCTTACCTGCTATCCCAACTTTACTTGTAGCTCTT CCTTCCGCATCCCTATCCCATATCTTGCGCCCTCGTCACCGCCTTGACGG CGATAACGACGACGACGGCACTGCCGTTTCCGGTGGCTCCTGTGGCGGGG GCGGCGGCGGCGGCGTCTATGATTCTTCTCCCGGTGATTGCTCTCCCGCA TTTTGTTTTGTCTGCCGTTCGTTTTCTGTGGGCGAATACCACCCACCCGC CCGCCTGCCCGCCCATGGCACGCAGTGATCGACGGGTGCCGGGCGCTGGA CGCATCGAGCAGCAAGGGGCTCGGCAGTTCGGCGGCGACGCAGTGCGGCG TGCTTTTCACCACCTACACGATGCTCGCATCGTCGCGTGGCAAGGACCGC CTGCAGCAGCTGGTCGACTGGTGCGGCAGCGAGAGCTTCGCCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8257:423..1417-

>mRNA_P-wetherbeei_contig8257.1.1 ID=mRNA_P-wetherbeei_contig8257.1.1|Name=mRNA_P-wetherbeei_contig8257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig8257:423..1417- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCGCCGGCATCATCCTCGACGCGTTCGCGCGCGGCCAGAAGAAGCA
CATCTGGTTCTCCATCGCGCCGGACCTGCGACTGGATGCCGAGCGGGATC
TGAAGGATGTTGGCTGCCACATCGGCGTGATCGACGGGTGCCGGGCGCTG
GACGCATCGAGCAGCAAGGGGCTCGGCAGTTCGGCGGCGACGCAGTGCGG
CGTGCTTTTCACCACCTACACGATGCTCGCATCGTCGCGTGGCAAGGACC
GCCTGCAGCAGCTGGTCGACTGGTGCGGCAGCGAGAGCTTCGCCGGT
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