mRNA_P-wetherbeei_contig825.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig825.4.1
Unique NamemRNA_P-wetherbeei_contig825.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig825.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig825contigP-wetherbeei_contig825:6146..6773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size629
Hectar predicted targeting categorysignal peptide
Exons1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.2787256-CDS-P-wetherbeei_contig825:6145..66251683187029.2787256-CDS-P-wetherbeei_contig825:6145..6625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig825 6146..6625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.2877586-UTR-P-wetherbeei_contig825:6625..67731683187029.2877586-UTR-P-wetherbeei_contig825:6625..6773Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig825 6626..6773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig825.4.1prot_P-wetherbeei_contig825.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig825 6146..6625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig825.4.1

>prot_P-wetherbeei_contig825.4.1 ID=prot_P-wetherbeei_contig825.4.1|Name=mRNA_P-wetherbeei_contig825.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MHFSMLLGFLGQIVAVPFFLFLFPARNGVRSGDGSGGRGTKAAAGALGRS
EAAYDAAGAAPRSAVVAQLARSRGGGVSGSGRRGGRSRVIAARNAAGSAT
AAGSPGGGGLPQTPEQWMGFIEQACDNARGALGGARGALDQLRRDADGAV
AAAAAAIAAP
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mRNA from alignment at P-wetherbeei_contig825:6146..6773-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig825.4.1 ID=mRNA_P-wetherbeei_contig825.4.1|Name=mRNA_P-wetherbeei_contig825.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=628bp|location=Sequence derived from alignment at P-wetherbeei_contig825:6146..6773- (Phaeothamnion wetherbeei SAG_119_79)
ATTCGGGGACATAAGAGAAATAAAAGGACGCCTCCCCATACCCTCTTTCC
TCTGAGAACGTCCTACTGCATCGTTTTCTTGGAAGGAGGTCCGCGGGATG
CAGTAAAAGAGGACTTGCGTTGGCTCAGAACGCAGAAGATTTGAAAAAAT
GCATTTCTCGATGCTCCTCGGCTTTCTGGGGCAGATTGTGGCCGTGCCAT
TCTTCTTATTCCTCTTCCCCGCGAGAAACGGCGTACGTAGTGGCGACGGC
AGCGGCGGCAGAGGCACCAAAGCAGCAGCAGGAGCCCTAGGACGTTCGGA
AGCGGCGTACGACGCAGCAGGCGCCGCTCCACGAAGCGCGGTCGTGGCGC
AGCTCGCGCGCTCAAGAGGCGGTGGCGTAAGCGGAAGTGGCCGCAGGGGA
GGCAGAAGTCGCGTGATCGCCGCCAGAAACGCGGCAGGGAGCGCAACGGC
AGCCGGCAGCCCGGGGGGGGGAGGCCTTCCCCAGACGCCGGAGCAATGGA
TGGGTTTTATCGAGCAGGCGTGCGACAACGCCCGTGGCGCGCTTGGCGGC
GCCCGCGGCGCGCTGGACCAGCTGCGGCGCGATGCCGACGGCGCCGTCGC
CGCCGCCGCCGCCGCCATCGCTGCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig825:6146..6773-

>mRNA_P-wetherbeei_contig825.4.1 ID=mRNA_P-wetherbeei_contig825.4.1|Name=mRNA_P-wetherbeei_contig825.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig825:6146..6773- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATTTCTCGATGCTCCTCGGCTTTCTGGGGCAGATTGTGGCCGTGCC
ATTCTTCTTATTCCTCTTCCCCGCGAGAAACGGCGTACGTAGTGGCGACG
GCAGCGGCGGCAGAGGCACCAAAGCAGCAGCAGGAGCCCTAGGACGTTCG
GAAGCGGCGTACGACGCAGCAGGCGCCGCTCCACGAAGCGCGGTCGTGGC
GCAGCTCGCGCGCTCAAGAGGCGGTGGCGTAAGCGGAAGTGGCCGCAGGG
GAGGCAGAAGTCGCGTGATCGCCGCCAGAAACGCGGCAGGGAGCGCAACG
GCAGCCGGCAGCCCGGGGGGGGGAGGCCTTCCCCAGACGCCGGAGCAATG
GATGGGTTTTATCGAGCAGGCGTGCGACAACGCCCGTGGCGCGCTTGGCG
GCGCCCGCGGCGCGCTGGACCAGCTGCGGCGCGATGCCGACGGCGCCGTC
GCCGCCGCCGCCGCCGCCATCGCTGCCCCC
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