mRNA_P-wetherbeei_contig8235.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8235.3.1
Unique NamemRNA_P-wetherbeei_contig8235.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8235.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8235contigP-wetherbeei_contig8235:1086..2079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categorymitochondrion
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.3492243-UTR-P-wetherbeei_contig8235:1085..11251683187028.3492243-UTR-P-wetherbeei_contig8235:1085..1125Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8235 1086..1125 -
1683187028.3582826-UTR-P-wetherbeei_contig8235:1696..17371683187028.3582826-UTR-P-wetherbeei_contig8235:1696..1737Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8235 1697..1737 -
1683187028.3748052-UTR-P-wetherbeei_contig8235:2052..20791683187028.3748052-UTR-P-wetherbeei_contig8235:2052..2079Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8235 2053..2079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.3665082-CDS-P-wetherbeei_contig8235:1737..20521683187028.3665082-CDS-P-wetherbeei_contig8235:1737..2052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8235 1738..2052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8235.3.1prot_P-wetherbeei_contig8235.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8235 1738..2052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8235.3.1

>prot_P-wetherbeei_contig8235.3.1 ID=prot_P-wetherbeei_contig8235.3.1|Name=mRNA_P-wetherbeei_contig8235.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MSSSRAATATSCSAAATVAARVARAAAALRCTATRSAAMSASHRRTWTAA
SIARTATTVAAAANGSAARERPSGHRASSSSSWSPSAKNVPSPSMPAAAE
LIGV*
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mRNA from alignment at P-wetherbeei_contig8235:1086..2079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8235.3.1 ID=mRNA_P-wetherbeei_contig8235.3.1|Name=mRNA_P-wetherbeei_contig8235.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=994bp|location=Sequence derived from alignment at P-wetherbeei_contig8235:1086..2079- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCGCTGCTGGAGCCGCTCGGCCATGTCCAGCTCCCGCGCCGCTAC
CGCCACCTCCTGCTCTGCCGCTGCCACCGTTGCTGCTAGAGTCGCCCGCG
CCGCAGCCGCGCTCCGCTGCACCGCCACCCGCAGCGCTGCAATGTCCGCT
TCGCACCGTCGGACCTGGACCGCCGCGTCAATAGCGCGCACCGCCACGAC
GGTGGCAGCCGCCGCGAATGGCTCTGCGGCTCGGGAACGGCCGTCTGGCC
ACCGCGCCTCCTCTTCTTCCTCTTGGTCTCCTTCTGCCAAGAATGTGCCG
TCACCTTCGATGCCAGCGGCAGCCGAGCTTATAGGTGTATAGCCATCGGC
AATGCCAGCGTCGGCATCACCACTGCCGCCACCGTCGCCACGGCCGGCGC
CGCCTTCGCCAAAGCTGCCAGCAGCGCGCCTCTGGCACCGCCACGGTTGC
CGCCGCGTCGGTCCCGCGGCGAGGACCGCGGCGGCAGCGGCGAGCGCGTG
CATCCGGGCCCGCAGGGCGTGACTCTTTGCGCGCAGCTGCAGCGTCCGCC
GCGCCCACGCGGGCACGGCGTCTGTTACGAGGTCTTCGAAGCGTGGCTGC
TCCTTGTGGAGCTGCTCCAGCGCCGCAGTAAACCTGATGCAAGAACGACA
ATCAACGGGCAGGTTCGCAGAAGCCACACAAAGGGACCAGCCGAAATATT
TTGACAATTGGAAGTGTCCGTTTGGCACCAGTAGGACGAGCACGGGACGG
CAAGTCTCAGCATCCAGTCACATAACCATCCGAGAACGCATCCTGACTCA
GGATGGCCGTTGGTTCTGAGCTGCAGTGAAGTGAGGCCACCAGCTCAAAG
AAGGAAAACAAACCACCTAAAACCTCAAGACCGCAAAAGAGAAGCTCCTT
GGCAACCCTGCACCTGCCCATTGCCGCCATGGCCGCCGCCGCCTCTGCCG
GCAGCGTCGCCGCATCTTCGTGCCACGAGCGGCATGCCCTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8235:1086..2079-

>mRNA_P-wetherbeei_contig8235.3.1 ID=mRNA_P-wetherbeei_contig8235.3.1|Name=mRNA_P-wetherbeei_contig8235.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig8235:1086..2079- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAGCTCCCGCGCCGCTACCGCCACCTCCTGCTCTGCCGCTGCCAC
CGTTGCTGCTAGAGTCGCCCGCGCCGCAGCCGCGCTCCGCTGCACCGCCA
CCCGCAGCGCTGCAATGTCCGCTTCGCACCGTCGGACCTGGACCGCCGCG
TCAATAGCGCGCACCGCCACGACGGTGGCAGCCGCCGCGAATGGCTCTGC
GGCTCGGGAACGGCCGTCTGGCCACCGCGCCTCCTCTTCTTCCTCTTGGT
CTCCTTCTGCCAAGAATGTGCCGTCACCTTCGATGCCAGCGGCAGCCGAG
CTTATAGGTGTATAG
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