mRNA_P-wetherbeei_contig823.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig823.3.1
Unique NamemRNA_P-wetherbeei_contig823.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig823.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig823contigP-wetherbeei_contig823:4116..5379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size731
Hectar predicted targeting categoryother localisation
Exons3
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.8767161-CDS-P-wetherbeei_contig823:4115..46731683187027.8767161-CDS-P-wetherbeei_contig823:4115..4673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 4116..4673 -
1683187027.8856592-CDS-P-wetherbeei_contig823:4942..50231683187027.8856592-CDS-P-wetherbeei_contig823:4942..5023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 4943..5023 -
1683187027.894126-CDS-P-wetherbeei_contig823:5289..53791683187027.894126-CDS-P-wetherbeei_contig823:5289..5379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 5290..5379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig823.3.1prot_P-wetherbeei_contig823.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig823 4116..5379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig823.3.1

>prot_P-wetherbeei_contig823.3.1 ID=prot_P-wetherbeei_contig823.3.1|Name=mRNA_P-wetherbeei_contig823.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
KRVEAGLEAERGRTGAMRLEAEKVPVLLKKMQEMAELAQLNGDLLERSKM
DQLRLQKQVLELQEEAREAQQAADRSDRDHRRETRELRRSLVKASQPLSL
IHRESADHGYDGSGTGGYGGSGYGNGSGDCDAPETATAAAAAAGVVAVEP
EVTGEADTATTSRLMGDVAALRTRVRELEAKVTELTPPPLGSDGGQANSN
GGGGGSCGRDGDCNRSGGGSGDGRERGTLAGEDAAMKQLHTAD
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mRNA from alignment at P-wetherbeei_contig823:4116..5379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig823.3.1 ID=mRNA_P-wetherbeei_contig823.3.1|Name=mRNA_P-wetherbeei_contig823.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1264bp|location=Sequence derived from alignment at P-wetherbeei_contig823:4116..5379- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGGTGGAGGCCGGGCTTGAGGCGGAGCGGGGGCGGACCGGGGCAAT
GCGGCTGGAGGCGGAGAAGGTGCCGGTGCTGCTGAAGAAGGTGGGCGGGG
AAGCGTCGGAGCAGTTGAGGGGAGTCGGTGCTGGTGGAGGAAGCGGGTGG
GTGGCCGAGCAGATCCTTCTGCTTTTCTTCATCCTTGAGTAGAGACGTCA
CCTGCACTGTGGTTACCTTTGATTTGGTTTAGGCTCTCTGCTGTGAATGC
GCCAAGCACTGCCTAACGGCGTTTTCATGTTTTCCATGCGGACGCCTGTG
ATAAAATTACTGTGTCGGTTACATCTATTGCTTACCTTATCCCTGCCTGT
ACGCAGATGCAAGAGATGGCCGAGTTGGCTCAGCTCAACGGCGATCTGCT
CGAGCGAAGCAAGATGGACCAACTGCGCCTGCAGAAGGTGAGAACACTCT
TTCGCCGCCGCCGCCGCCGTCACCGCTGCGGACAAAGCAACGATGGGGCT
GCCAGGCTGTTGCCACCGCAGCTGCTGTTGCTGCCGCCGCTGTTGCACCA
TCTATCAGTGTTCCTCGCCTGGCAGACGCTCTCCTTCTCTTGCGTTGACA
TCCCTCTTTGCCGCCTTCCGCTGACCTATCATGGATTTCTTTCTTCGTTC
TTCTGTTAACCGTTCCAACCGCTTTCAACGTGTTCCACGAAATTTGCCGC
CCGCAGCAAGTCTTGGAGCTGCAAGAGGAGGCACGAGAGGCGCAGCAGGC
GGCGGACCGCAGCGACCGCGACCATCGCCGCGAGACGCGAGAGCTCCGCC
GCAGCCTCGTCAAAGCCAGCCAGCCCTTGTCGTTGATTCACCGGGAATCG
GCCGACCACGGCTACGATGGCAGCGGCACCGGTGGCTACGGCGGCAGCGG
CTACGGCAATGGAAGCGGCGATTGCGACGCGCCTGAGACGGCGACCGCGG
CGGCGGCAGCGGCGGGGGTAGTAGCGGTGGAACCAGAGGTTACTGGGGAG
GCTGATACGGCCACGACGTCACGGCTGATGGGAGACGTCGCCGCGTTGCG
GACACGAGTCAGGGAGCTGGAGGCAAAGGTCACTGAACTGACGCCGCCTC
CGCTGGGTTCTGACGGCGGGCAGGCTAACAGTAACGGCGGCGGTGGCGGC
AGCTGCGGCAGGGACGGCGACTGTAACAGGAGCGGCGGCGGCAGCGGCGA
TGGCAGGGAACGCGGGACGCTCGCCGGGGAAGATGCCGCAATGAAGCAGC
TGCACACCGCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig823:4116..5379-

>mRNA_P-wetherbeei_contig823.3.1 ID=mRNA_P-wetherbeei_contig823.3.1|Name=mRNA_P-wetherbeei_contig823.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig823:4116..5379- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGGTGGAGGCCGGGCTTGAGGCGGAGCGGGGGCGGACCGGGGCAAT
GCGGCTGGAGGCGGAGAAGGTGCCGGTGCTGCTGAAGAAGATGCAAGAGA
TGGCCGAGTTGGCTCAGCTCAACGGCGATCTGCTCGAGCGAAGCAAGATG
GACCAACTGCGCCTGCAGAAGCAAGTCTTGGAGCTGCAAGAGGAGGCACG
AGAGGCGCAGCAGGCGGCGGACCGCAGCGACCGCGACCATCGCCGCGAGA
CGCGAGAGCTCCGCCGCAGCCTCGTCAAAGCCAGCCAGCCCTTGTCGTTG
ATTCACCGGGAATCGGCCGACCACGGCTACGATGGCAGCGGCACCGGTGG
CTACGGCGGCAGCGGCTACGGCAATGGAAGCGGCGATTGCGACGCGCCTG
AGACGGCGACCGCGGCGGCGGCAGCGGCGGGGGTAGTAGCGGTGGAACCA
GAGGTTACTGGGGAGGCTGATACGGCCACGACGTCACGGCTGATGGGAGA
CGTCGCCGCGTTGCGGACACGAGTCAGGGAGCTGGAGGCAAAGGTCACTG
AACTGACGCCGCCTCCGCTGGGTTCTGACGGCGGGCAGGCTAACAGTAAC
GGCGGCGGTGGCGGCAGCTGCGGCAGGGACGGCGACTGTAACAGGAGCGG
CGGCGGCAGCGGCGATGGCAGGGAACGCGGGACGCTCGCCGGGGAAGATG
CCGCAATGAAGCAGCTGCACACCGCCGAC
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