mRNA_P-wetherbeei_contig823.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig823.2.1
Unique NamemRNA_P-wetherbeei_contig823.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig823.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig823contigP-wetherbeei_contig823:3074..4097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size532
Hectar predicted targeting categoryother localisation
Exons3
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.830132-CDS-P-wetherbeei_contig823:3073..32891683187027.830132-CDS-P-wetherbeei_contig823:3073..3289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 3074..3289 -
1683187027.8405094-CDS-P-wetherbeei_contig823:3537..36841683187027.8405094-CDS-P-wetherbeei_contig823:3537..3684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 3538..3684 -
1683187027.8506908-CDS-P-wetherbeei_contig823:3929..40971683187027.8506908-CDS-P-wetherbeei_contig823:3929..4097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 3930..4097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig823.2.1prot_P-wetherbeei_contig823.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig823 3074..4097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig823.2.1

>prot_P-wetherbeei_contig823.2.1 ID=prot_P-wetherbeei_contig823.2.1|Name=mRNA_P-wetherbeei_contig823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
GRQRPDRAGDGGEGKNRSESSVGSSRVGGGGSGGLSGGYEDLPVVTVLTA
RWMLDKWAMTARFAMVARRLRARAEDAEATMATVRKASATPSGTSTAARR
PTAEQCPRVTARGSDQRCSAGGTPAPPMSPTATTSAGTMAATAVAAGAST
AVYPAAAADAALCSAKTEAARAKGEAE
back to top

mRNA from alignment at P-wetherbeei_contig823:3074..4097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig823.2.1 ID=mRNA_P-wetherbeei_contig823.2.1|Name=mRNA_P-wetherbeei_contig823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-wetherbeei_contig823:3074..4097- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGGCAGAGACCGGATAGAGCCGGTGACGGTGGCGAAGGCAAGAATCG
CAGCGAAAGTAGCGTCGGCAGCAGTAGAGTTGGCGGCGGCGGCAGCGGCG
GGCTCAGCGGCGGCTACGAAGACTTGCCGGTGGTAACGGTGCTTACAGCC
CGCTGGATGCTTGATAAGGTAAGCACGTGGGATACCACCTATGTCTAGAA
ACGTTCTATCGCATTTTGAAAGAACCGGTTGCTCCCAAACATCAAAAGCC
GCATCTCTCTCCGAGTTCCTTCGCTTCTGGCCCGCCACATCTGAACGCGA
TCTGCGCATGTTCCTCCCTCGACACCAACTTGAAACCTACGGCAACCGTC
GGGCAATGCCGGGGACCGCCGGTGGGTCACTGACCGCTAACCGCCGGCAA
CCGTCGCCGGCAGTGGGCGATGACGGCCCGCTTCGCTATGGTTGCGCGCA
GGCTCCGGGCGCGCGCCGAAGACGCCGAGGCGACGATGGCGACAGTGCGA
AAGGCGAGCGCCACCCCAAGCGGCACGTCGACAGCTGCCCGTAGACCTAC
AGCAGAGCAGGTACGTGAAGGCTCTTTTCGCTATGAGGGTATTACCCAGA
ACGTCTGCACAAAGGTCTTAAATTACACAAGCTGGAGTTGTCAGTCGCCG
GCGGCTCCGAGTCTGACAGCTGCCCTGCCTTTGTTTACCAGCGGCGTATA
AATCTTTCTTGGTAGGACGCTTGCAGTTAGAGTCGACGGATTACGGCAAC
CGTTTCTCTTGTGCTTTCATTCCTTCAACTCTGTCTCTCTTTCTTTTCCT
TTCCACAGTGCCCGCGGGTAACGGCCCGGGGCTCGGACCAGAGGTGCAGT
GCCGGCGGCACGCCCGCGCCACCGATGTCGCCAACCGCCACAACATCAGC
GGGAACGATGGCGGCGACGGCGGTGGCGGCGGGAGCATCGACGGCCGTCT
ACCCCGCGGCAGCGGCAGATGCGGCGCTGTGCAGCGCTAAGACCGAAGCG
GCGCGCGCCAAGGGAGAGGCGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig823:3074..4097-

>mRNA_P-wetherbeei_contig823.2.1 ID=mRNA_P-wetherbeei_contig823.2.1|Name=mRNA_P-wetherbeei_contig823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig823:3074..4097- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGGCAGAGACCGGATAGAGCCGGTGACGGTGGCGAAGGCAAGAATCG
CAGCGAAAGTAGCGTCGGCAGCAGTAGAGTTGGCGGCGGCGGCAGCGGCG
GGCTCAGCGGCGGCTACGAAGACTTGCCGGTGGTAACGGTGCTTACAGCC
CGCTGGATGCTTGATAAGTGGGCGATGACGGCCCGCTTCGCTATGGTTGC
GCGCAGGCTCCGGGCGCGCGCCGAAGACGCCGAGGCGACGATGGCGACAG
TGCGAAAGGCGAGCGCCACCCCAAGCGGCACGTCGACAGCTGCCCGTAGA
CCTACAGCAGAGCAGTGCCCGCGGGTAACGGCCCGGGGCTCGGACCAGAG
GTGCAGTGCCGGCGGCACGCCCGCGCCACCGATGTCGCCAACCGCCACAA
CATCAGCGGGAACGATGGCGGCGACGGCGGTGGCGGCGGGAGCATCGACG
GCCGTCTACCCCGCGGCAGCGGCAGATGCGGCGCTGTGCAGCGCTAAGAC
CGAAGCGGCGCGCGCCAAGGGAGAGGCGGAG
back to top