mRNA_P-wetherbeei_contig8228.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8228.1.1
Unique NamemRNA_P-wetherbeei_contig8228.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8228.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8228contigP-wetherbeei_contig8228:214..781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size568
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.7071075-UTR-P-wetherbeei_contig8228:213..3871683187027.7071075-UTR-P-wetherbeei_contig8228:213..387Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8228 214..387 +
1683187027.7299948-UTR-P-wetherbeei_contig8228:720..7811683187027.7299948-UTR-P-wetherbeei_contig8228:720..781Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8228 721..781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.718928-CDS-P-wetherbeei_contig8228:387..7201683187027.718928-CDS-P-wetherbeei_contig8228:387..720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8228 388..720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8228.1.1prot_P-wetherbeei_contig8228.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8228 388..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8228.1.1

>prot_P-wetherbeei_contig8228.1.1 ID=prot_P-wetherbeei_contig8228.1.1|Name=mRNA_P-wetherbeei_contig8228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MRPLSGRVKEELKLYSGSFGPAAFTFIAFAMEPYGRLCPAAEAAAAEGAG
ASRRGREGRVRAATGGQVPVLLPAKAGSGVGTGAVMADGGDGAGMLLCGS
GARRGMNRKK*
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mRNA from alignment at P-wetherbeei_contig8228:214..781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8228.1.1 ID=mRNA_P-wetherbeei_contig8228.1.1|Name=mRNA_P-wetherbeei_contig8228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=568bp|location=Sequence derived from alignment at P-wetherbeei_contig8228:214..781+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGCATGCCGACCGCAAGAACTACCGGATGGACATGGTGCTCAGCCCGG
CCGCCGGCATCATGAACACCGGCGACAAAGGCATCGACTTGAAGCGGACG
TTCGTCGACGTCACCGTCACTGACCCGACCTTCAAGTCGTGCGTACTGTG
GGCCCGGCTGCCGAACGCCTGGCCATGCGGCCTCTCTCAGGGCGGGTAAA
GGAGGAACTAAAACTGTATTCGGGCTCTTTCGGCCCGGCTGCTTTTACTT
TCATCGCGTTTGCCATGGAGCCGTACGGTCGGCTGTGCCCAGCAGCAGAG
GCAGCGGCTGCTGAAGGTGCTGGCGCTTCACGCCGCGGCCGGGAAGGACG
GGTTAGAGCGGCGACGGGCGGGCAGGTTCCGGTACTTCTTCCAGCAAAAG
CTGGCAGTGGCGTTGGAACGGGCGCTGTCATGGCAGACGGAGGAGATGGC
GCTGGAATGTTGCTTTGCGGCAGCGGCGCGCGGCGGGGTATGAACCGGAA
GAAATGACGAACCGGCATGTGTTAGAAGCGGAGGGGTTTGATGACGAGCG
AGAATCATTTTCCTTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8228:214..781+

>mRNA_P-wetherbeei_contig8228.1.1 ID=mRNA_P-wetherbeei_contig8228.1.1|Name=mRNA_P-wetherbeei_contig8228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig8228:214..781+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCCTCTCTCAGGGCGGGTAAAGGAGGAACTAAAACTGTATTCGGG
CTCTTTCGGCCCGGCTGCTTTTACTTTCATCGCGTTTGCCATGGAGCCGT
ACGGTCGGCTGTGCCCAGCAGCAGAGGCAGCGGCTGCTGAAGGTGCTGGC
GCTTCACGCCGCGGCCGGGAAGGACGGGTTAGAGCGGCGACGGGCGGGCA
GGTTCCGGTACTTCTTCCAGCAAAAGCTGGCAGTGGCGTTGGAACGGGCG
CTGTCATGGCAGACGGAGGAGATGGCGCTGGAATGTTGCTTTGCGGCAGC
GGCGCGCGGCGGGGTATGAACCGGAAGAAATGA
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