mRNA_P-wetherbeei_contig8221.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8221.1.1
Unique NamemRNA_P-wetherbeei_contig8221.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Match: A0A7S3UZX4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 6.940e-10
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2 
Query:   80 IRPPQGQQVRGLKKNVYVEEWNGLREITEKTFKVDGKTFPYIL-GTGAFCFVIYQWTKADFAAQDKAK 280
            +RP     +RGLKKN +VEEWNG REITE+TF   G+T   +L   G F   +Y  TK +   +D +K
Sbjct:   30 LRPYARASIRGLKKNAFVEEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASK 97
[Close]
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Match: W7U3B1_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3B1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:   98 QQVRGL-KKNVYVEEWNGLREITEKTFKVDGKTFPYILG 211
            +Q+ GL +KN +VEEWNG REITEKTFK + KT P ++G
Sbjct:   22 RQLSGLVEKNYFVEEWNGRREITEKTFKFNSKTVPSLIG 60
[Close]
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Match: A0A7R9WDN6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDN6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.020e-6
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:  116 KKNVYVEEWNGLREITEKTFKVDGK-TFPYILGTGAFCFVIYQWTKADF 259
            KKN ++EEWNG REITEK F++DGK +       G   ++IY +++ +F
Sbjct:   45 KKNKFIEEWNGRREITEKAFEMDGKNSMRVFFYAGVIPYLIYAFSRKEF 93
[Close]
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Match: A0A1Z5KD91_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KD91_FISSO)

HSP 1 Score: 48.5 bits (114), Expect = 2.520e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:  113 LKKNVYVEEWNGLREITEKTFKVDGKTFPYILGTGAFC-FVIYQWTKADF 259
            +KKN ++EEWNG REITEK+F+V+    P ++ T     + IY W++++F
Sbjct:   32 VKKNKFMEEWNGKREITEKSFEVNFANIPTLVMTLLVVPYGIYTWSRSEF 81
[Close]
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Match: K0QZK4_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZK4_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 2.740e-5
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 2 
Query:  113 LKKNVYVEEWNGLREITEKTFKV-DGKTFPYILGTGAFCFVIYQWTKAD 256
            +KKN YVEEWNG REITEK F+V      P IL   AF + IY +T+ +
Sbjct:  156 VKKNPYVEEWNGRREITEKAFEVTQDNLLPLILMCVAFPYGIYHFTRKE 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3UZX4_HETAK6.940e-1045.59Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7U3B1_9STRA1.700e-661.54Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7R9WDN6_9STRA8.020e-644.90Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5KD91_FISSO2.520e-544.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K0QZK4_THAOC2.740e-553.06Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8221contigP-wetherbeei_contig8221:484..857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size284
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.4044857-CDS-P-wetherbeei_contig8221:483..6191683187027.4044857-CDS-P-wetherbeei_contig8221:483..619Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8221 484..619 +
1683187027.414585-CDS-P-wetherbeei_contig8221:710..8561683187027.414585-CDS-P-wetherbeei_contig8221:710..856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8221 711..856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8221.1.1prot_P-wetherbeei_contig8221.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8221 484..856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8221.1.1

>prot_P-wetherbeei_contig8221.1.1 ID=prot_P-wetherbeei_contig8221.1.1|Name=mRNA_P-wetherbeei_contig8221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
EFGRRIQVGQSHERTPGDAAVLPAGMHPPAAGTAGPRPQEERLRRGMERL
ARDYGENVQGGRKDFPLHPWDGRVLLRHISVDEGGLRGAGQGKR
back to top

mRNA from alignment at P-wetherbeei_contig8221:484..857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8221.1.1 ID=mRNA_P-wetherbeei_contig8221.1.1|Name=mRNA_P-wetherbeei_contig8221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=374bp|location=Sequence derived from alignment at P-wetherbeei_contig8221:484..857+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTCGGCCGCAGAATTCAAGTCGGCCAAAGCCATGAACGCACTCCCGG
CGATGCGGCAGTGCTTCCGGCGGGCATGCATCCGCCCGCCGCAGGGACAG
CAGGTCCGAGGCCTCAAGAAGAACGTCTACGTCGAGGTGGGAAAGTTTTG
CCTGTCCCAGCACCCTCCTCCTCAAGCCTCTTTCGCTAACTTCCAAGAGA
CTGCCCTGCCCTTCTTTGGATGTGCAGGAATGGAACGGCTTGCGCGAGAT
TACGGAGAAAACGTTCAAGGTGGACGGAAAGACTTTCCCCTACATCCTTG
GGACGGGCGCGTTTTGCTTCGTCATATATCAGTGGACGAAGGCGGACTTC
GCGGCGCAGGACAAGGCAAAAGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8221:484..857+

>mRNA_P-wetherbeei_contig8221.1.1 ID=mRNA_P-wetherbeei_contig8221.1.1|Name=mRNA_P-wetherbeei_contig8221.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig8221:484..857+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTCGGCCGCAGAATTCAAGTCGGCCAAAGCCATGAACGCACTCCCGG
CGATGCGGCAGTGCTTCCGGCGGGCATGCATCCGCCCGCCGCAGGGACAG
CAGGTCCGAGGCCTCAAGAAGAACGTCTACGTCGAGGAATGGAACGGCTT
GCGCGAGATTACGGAGAAAACGTTCAAGGTGGACGGAAAGACTTTCCCCT
ACATCCTTGGGACGGGCGCGTTTTGCTTCGTCATATATCAGTGGACGAAG
GCGGACTTCGCGGCGCAGGACAAGGCAAAAGG
back to top