mRNA_P-wetherbeei_contig8204.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8204.1.1
Unique NamemRNA_P-wetherbeei_contig8204.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8204.1.1 vs. uniprot
Match: A0A812VLL7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLL7_SYMMI)

HSP 1 Score: 76.3 bits (186), Expect = 5.480e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 IAFTSFKVGDIAIFFPIDSGDFLAFNVGAPHRYLSDESKALVGKDPHFRPYCVLGRI 171
            I+ +SFK  D+A+FFP   GD+LAFN GAPH YLS ESKAL+G D HFR   V+G+I
Sbjct:  242 ISLSSFKENDLALFFPTPRGDYLAFNAGAPHHYLSAESKALIGHDKHFRKIYVMGKI 298
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BLAST of mRNA_P-wetherbeei_contig8204.1.1 vs. uniprot
Match: W7TGV0_9STRA (ATG11 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGV0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.070e-15
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 IAFTSFKVGDIAIFFPIDSGDFLAFNVGAPHRYLSDESKALVGKDPHFRPYCVLGRI 171
            I F  F +G +A+FFP  +GD+LAFNVG PH YLS+++KA +G+D HFR Y VLGRI
Sbjct:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRI 465
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BLAST of mRNA_P-wetherbeei_contig8204.1.1 vs. uniprot
Match: A0A835Z2F8_9STRA (ATG11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.080e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 IAFTSFKVGDIAIFFPIDSGDFLAFNVGAPHRYLSDESKALVGKDPHFRPYCVLGRI 171
            IA+  F+VG  A+F P   G FLAFNVGAP+ +L+ ES  L+G DPHF  + +LGR+
Sbjct:   61 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRV 117
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BLAST of mRNA_P-wetherbeei_contig8204.1.1 vs. uniprot
Match: A0A7R9UFA6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.710e-11
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 IAFTSFKVGDIAIFFPIDSGDFLAFNVGAPHRYLSDESKALVGKDPHFRPYCVLGRI 171
            I+FTSF + DI +F       +LAFNVGAP  +L+ E   LVGKD HF PY +LGRI
Sbjct:  203 ISFTSFTISDIGLFLVTPGNYYLAFNVGAPRHFLAPECAELVGKDKHFTPYYILGRI 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A812VLL7_SYMMI5.480e-1561.40Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
W7TGV0_9STRA8.070e-1559.65ATG11 domain-containing protein n=3 Tax=Monodopsid... [more]
A0A835Z2F8_9STRA4.080e-1252.63ATG11 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7R9UFA6_9STRA2.710e-1154.39Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8204contigP-wetherbeei_contig8204:154..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEL8
PFAMsATG11
Model size171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue3.82e-16
EggNOG OGs28MXS@1|root,2SDRJ@2759|Eukaryota
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-23_002530.1
DescriptionAutophagy-related protein 11
Cds size171
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.9580522-CDS-P-wetherbeei_contig8204:153..2311683187025.9580522-CDS-P-wetherbeei_contig8204:153..231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8204 154..231 +
1683187025.9672296-CDS-P-wetherbeei_contig8204:455..5481683187025.9672296-CDS-P-wetherbeei_contig8204:455..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8204 456..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8204.1.1prot_P-wetherbeei_contig8204.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8204 154..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8204.1.1

>prot_P-wetherbeei_contig8204.1.1 ID=prot_P-wetherbeei_contig8204.1.1|Name=mRNA_P-wetherbeei_contig8204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
IAFTSFKVGDIAIFFPIDSGDFLAFNVGAPHRYLSDESKALVGKDPHFRP
YCVLGRI
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mRNA from alignment at P-wetherbeei_contig8204:154..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8204.1.1 ID=mRNA_P-wetherbeei_contig8204.1.1|Name=mRNA_P-wetherbeei_contig8204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=395bp|location=Sequence derived from alignment at P-wetherbeei_contig8204:154..548+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGCGTTCACGAGCTTCAAGGTCGGCGACATCGCCATCTTCTTCCCGAT
CGACTCGGGGGACTTTTTGGCTTTCAATGTGAGTTATTCTCCTCTCCGCG
TAAGTAGCCATTTTGCTCTTACGGAATGTTCGTAAATAGAAGCAACTCTT
TGCCGATGCTTGTAAGCCCTTAAATCAAATTTGCTACGCGAATCTAGTCC
TGAGGGCGTCGCCGCTGTCTCTTCCGCCCTCCTCCTCTTTCGTCCGGTGG
GCCTCTTCCGTTCCGCGTGCGCGCCTTTCTTTCTTTCTTCGTTCGGTGGC
AGGTGGGCGCTCCCCACCGCTACCTTTCGGATGAGAGCAAGGCACTCGTG
GGGAAGGACCCACACTTCCGCCCCTACTGTGTGCTCGGCCGCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8204:154..548+

>mRNA_P-wetherbeei_contig8204.1.1 ID=mRNA_P-wetherbeei_contig8204.1.1|Name=mRNA_P-wetherbeei_contig8204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig8204:154..548+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGCGTTCACGAGCTTCAAGGTCGGCGACATCGCCATCTTCTTCCCGAT
CGACTCGGGGGACTTTTTGGCTTTCAATGTGGGCGCTCCCCACCGCTACC
TTTCGGATGAGAGCAAGGCACTCGTGGGGAAGGACCCACACTTCCGCCCC
TACTGTGTGCTCGGCCGCATC
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