mRNA_P-wetherbeei_contig8202.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8202.1.1
Unique NamemRNA_P-wetherbeei_contig8202.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:   19 GTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEVEMNQRNEEAGDSDTE 264
            GTPVT+E+LA WKA RAA RR+EER+++E E+ KK   KGL+VLSGRALF+YD +LF DD+ A G+ E + R EE GDSD E
Sbjct:  141 GTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLR-EERGDSDAE 221
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.440e-19
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   16 QGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEVEMNQRNE 240
            QGTPV  E+LAKWKADR A++  EER+ ++AE+KKK  GKGLSVLSGRAL++YD TLF DD  A     M QRN+
Sbjct:  142 QGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNDTMKQRND 216
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S2AVQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVQ2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.460e-18
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   13 VQGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEV-----EMNQRNEEAG 249
            V GTPVT E+LA WKA RA RRR     L+EAELKKKKGGKGLS+LSG+ LF+Y++ LF+DD+ A  EV     ++++  EEAG
Sbjct:  183 VVGTPVTEETLAVWKAARAERRRAANAALVEAELKKKKGGKGLSILSGKDLFQYNRELFVDDEEADDEVYERQSDVDEDEEEAG 266
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S1H2A6_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2A6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.450e-18
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   16 QGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEVEMNQRNEEAGDSDTE 264
            +GTPVT E+   W+  +  R+ +E + ++EAELKKKKGGKGL+VLSGRALF Y + LF+DD+ AA +++ +  NE+  D+D +
Sbjct:   67 KGTPVTQETFKAWQEKKRRRKADEAKSMVEAELKKKKGGKGLAVLSGRALFSYKKELFVDDEGAAEDIQRDFANEDIDDTDVD 149
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.680e-18
Identity = 45/82 (54.88%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:   19 GTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEVEMNQRNEEAGDSDTE 264
            GTPVT E+LAKW+ DRA RRR+   + + AEL+KKKGGKGL+VLSG+ LF YD++LF+DD+AA  +++  +R  +AG+ + E
Sbjct:  181 GTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDDEAA--DIDEYERTSDAGEEEGE 260
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.650e-16
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   19 GTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGE 216
            GTPVT ESLA+WK+DR  RRR      +EAE+KKKKGGKGLSVLSG+ LF Y+Q+LF+DD+ A  E
Sbjct:  180 GTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEADDE 245
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.670e-16
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:   16 QGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAAAGEVEMNQR 234
            +GTP+T ESL  W+  +  R+ EE +KL+E ELKKKKGGKGLSVLSGRAL+ Y++ LF+DD+ A  + ++ +R
Sbjct:  173 KGTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAER 245
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BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S2KI75_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KI75_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.750e-15
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   16 QGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAA 207
            +GTPVT E+L  W+  +  +R EE +KL+EAE +KKKGGKGLSVLSGRAL+EY+++LF DD+AA
Sbjct:  176 KGTPVTEETLKIWQDKKRKKRLEEAKKLVEAESRKKKGGKGLSVLSGRALYEYNKSLFKDDEAA 239
[Close]
BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7S1VVP4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVP4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.420e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   19 GTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDD 201
            GTPVT ES   W+  +  R+ +E RK +EAELKKKKGGKGLSVLSGRAL+EY + LF+D D
Sbjct:  175 GTPVTEESFRAWQERKRKRKADEARKKVEAELKKKKGGKGLSVLSGRALYEYKKELFVDKD 235
[Close]
BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Match: A0A7R9VNV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNV0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.940e-14
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   16 QGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVLSGRALFEYDQTLFIDDDAA 207
            +GTPVT E+   W+  +  R  +E +KL+EAELKKKKGGKGLSVLSG+ LFEY + LF DDD A
Sbjct:  174 KGTPVTPETFKAWQEKKRKRHADEAKKLVEAELKKKKGGKGLSVLSGKDLFEYKKELFQDDDEA 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8202.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZLI2_9STRA1.100e-1962.20DFRP_C domain-containing protein n=1 Tax=Tribonema... [more]
D8LTJ1_ECTSI3.440e-1962.67DFRP_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2AVQ2_9STRA4.460e-1858.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1H2A6_9STRA6.450e-1849.40Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2R4K8_9STRA9.680e-1854.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BQG9_9STRA2.650e-1665.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BEE4_9STRA6.670e-1654.79Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2KI75_9STRA4.750e-1562.50Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1VVP4_9STRA2.420e-1463.93Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9VNV0_9STRA2.940e-1460.94Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8202contigP-wetherbeei_contig8202:1332..1949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTJ1
Preferred nameZC3H15
PFAMsDFRP_C,zf-CCCH
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K03243,ko:K06185
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Exons2
Evalue5.64e-20
EggNOG OGsCOG5252@1|root,KOG1763@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005810.1
Descriptioncytokine-mediated signaling pathway
Cds size387
COG categoryL
BRITEko00000,ko00001,ko03009,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.8646705-CDS-P-wetherbeei_contig8202:1331..14671683187025.8646705-CDS-P-wetherbeei_contig8202:1331..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8202 1332..1467 +
1683187025.8743834-CDS-P-wetherbeei_contig8202:1698..19491683187025.8743834-CDS-P-wetherbeei_contig8202:1698..1949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8202 1699..1949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8202.1.1prot_P-wetherbeei_contig8202.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8202 1332..1949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8202.1.1

>prot_P-wetherbeei_contig8202.1.1 ID=prot_P-wetherbeei_contig8202.1.1|Name=mRNA_P-wetherbeei_contig8202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MVLCVQGTPVTAESLAKWKADRAARRREEERKLIEAELKKKKGGKGLSVL
SGRALFEYDQTLFIDDDAAAGEVEMNQRNEEAGDSDTEANSGGGGGGEEG
DGGGREEGDGGEDDDGADDGVAESKESDR
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mRNA from alignment at P-wetherbeei_contig8202:1332..1949+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8202.1.1 ID=mRNA_P-wetherbeei_contig8202.1.1|Name=mRNA_P-wetherbeei_contig8202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig8202:1332..1949+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGTGCGTGCAGGGCACGCCGGTGACGGCGGAGAGTCTGGCGAA
GTGGAAGGCGGATCGGGCGGCGCGACGGAGAGAAGAGGAGCGGAAGCTTA
TCGAAGCGGAGCTCAAAAAGAAGAAGGGCGGCAAAGGTGAGTTTGGGGGT
CCAGCAGGCTTTCCTGGCAGAGTAGTCGTAAATTTCTTCTCGTTCTTTTC
TTCAGCCCTCACTCGGATCTCGCTACGTTTCGCCGCACATTGTCTGCGCT
TTTCGGACGATTCGCCCCTGCCATTGATGTGCGGTCGTGCGTTTGCTTGC
TAGCCCGTCTTTTTCACGTAACCTGCGCTATGTTTTCACATGTGCCGTCG
GGTTGGGTCATCGGCAGGCTTGTCGGTTCTGTCGGGCCGCGCGCTGTTCG
AATACGACCAGACTCTCTTCATCGACGACGACGCCGCGGCGGGAGAGGTG
GAGATGAACCAGCGAAACGAGGAAGCCGGGGACAGCGACACTGAGGCCAA
CAGCGGCGGCGGCGGCGGCGGCGAGGAGGGCGACGGCGGTGGCCGCGAGG
AGGGCGACGGCGGTGAGGACGATGATGGCGCCGACGATGGCGTGGCAGAG
TCGAAGGAAAGTGACAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8202:1332..1949+

>mRNA_P-wetherbeei_contig8202.1.1 ID=mRNA_P-wetherbeei_contig8202.1.1|Name=mRNA_P-wetherbeei_contig8202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig8202:1332..1949+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGTGCGTGCAGGGCACGCCGGTGACGGCGGAGAGTCTGGCGAA
GTGGAAGGCGGATCGGGCGGCGCGACGGAGAGAAGAGGAGCGGAAGCTTA
TCGAAGCGGAGCTCAAAAAGAAGAAGGGCGGCAAAGGCTTGTCGGTTCTG
TCGGGCCGCGCGCTGTTCGAATACGACCAGACTCTCTTCATCGACGACGA
CGCCGCGGCGGGAGAGGTGGAGATGAACCAGCGAAACGAGGAAGCCGGGG
ACAGCGACACTGAGGCCAACAGCGGCGGCGGCGGCGGCGGCGAGGAGGGC
GACGGCGGTGGCCGCGAGGAGGGCGACGGCGGTGAGGACGATGATGGCGC
CGACGATGGCGTGGCAGAGTCGAAGGAAAGTGACAGA
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