mRNA_P-wetherbeei_contig8189.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8189.1.1
Unique NamemRNA_P-wetherbeei_contig8189.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: A0A835ZJP1_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-12
Identity = 70/116 (60.34%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:  377 SLYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDRDVRRAPARRRSPDGRGGNXXXXXXXXXXXXXXXXXXXRRME-KVTAESLRRMEDLKRRYGDASA 721
            +LY QVV+  R+   A GK+YA+RPTSYK SLSLK DR+T RRKS+SRSPDR              R   XXXXXXXXXXXXXXX    RR   K+TAESLR+ E LKR+YGDASA
Sbjct:  251 ALYAQVVENDRKASTAVGKDYASRPTSYKGSLSLKADRFTVRRKSSSRSPDR-------------ARAXXXXXXXXXXXXXXXXXRAEPRREPAKITAESLRKAEALKRKYGDASA 353
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: A0A6H5KEK1_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.810e-9
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  362 NLDFGSLYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDR 532
            ++D   LY QV+++ RE   A GK+YAARP SYK SLSLK+DRYT RRKS SRSPDR
Sbjct:  528 DMDTSKLYAQVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKSRSRSPDR 584
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: D7FPC2_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC2_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.910e-9
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  362 NLDFGSLYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDR 532
            ++D   LY QV+++ RE   A GK+YAARP SYK SLSLK+DRYT RRKS SRSPDR
Sbjct:  506 DMDTSKLYAQVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKSRSRSPDR 562
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: A0A7S2W6Z5_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6Z5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.340e-7
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:  353 GIGNLDFGSLYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDRDVRRAPARRRSP 568
            G G     ++  +V ++ RE   A GK+YA RP SYK SLSL +DRYTHR+KS SRSPDR   R   RR SP
Sbjct:  399 GRGGSLLSNVMAEVTKRDRERSAAQGKDYAQRPASYKGSLSLALDRYTHRKKSRSRSPDRSSYR---RRNSP 467
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: A0A7S2FY12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FY12_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.650e-7
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  380 LYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDR 532
            +  +V+++G+    A GK+YA RP SYK SLSL +DR+THR+KS SRSPDR
Sbjct:   99 MLSEVLKRGQGSAAATGKDYAQRPASYKGSLSLTMDRFTHRKKSRSRSPDR 149
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BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Match: A0A8K1CAH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAH7_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 7.670e-5
Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = 2 
Query:  380 LYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSPDRDVRRAPARRRSPDGRGGNXXXXXXXXXXXXXXXXXXXRRMEKVTAESLRRMEDLKRRYGDAS 718
            L  QV +Q R    A GK+YAARP SYK SLSLK+DRYT R++S ++      R  PARR S                           +  +V+ E+  RM+ L+  YGDAS
Sbjct:  284 LMAQVREQERRKAAAVGKDYAARPASYKGSLSLKLDRYTTRKQSPTK------RTEPARRPS-----------NRSNAPTLPDATETTSKPAEVSREAQERMKKLREMYGDAS 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8189.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835ZJP1_9STRA1.200e-1260.34Tudor domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6H5KEK1_9PHAE2.810e-964.91Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPC2_ECTSI2.910e-964.91Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2W6Z5_9STRA1.340e-752.78Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulin... [more]
A0A7S2FY12_9STRA5.650e-756.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CAH7_PYTOL7.670e-538.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8189contigP-wetherbeei_contig8189:78..1433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPC2
Preferred namePRPF38B
PFAMsPRP38,PRP38_assoc
Model size1113
Max annot lvl2759|Eukaryota
KEGG koko:K12850
KEGG Pathwayko03040,map03040
Hectar predicted targeting categorymitochondrion
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008380,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0010226,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0071011,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Exons2
Evalue4.89e-11
EggNOG OGsKOG2888@1|root,KOG2888@2759|Eukaryota
Ec32 ortholog descriptionPre-mRNA-splicing factor 38
Ec32 orthologEc-15_003940.2
DescriptionRNA splicing
Cds size654
COG categoryO
BRITEko00000,ko00001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.022053-UTR-P-wetherbeei_contig8189:77..1531683187025.022053-UTR-P-wetherbeei_contig8189:77..153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8189 78..153 +
1683187025.046946-UTR-P-wetherbeei_contig8189:1050..14331683187025.046946-UTR-P-wetherbeei_contig8189:1050..1433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8189 1051..1433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.0314806-CDS-P-wetherbeei_contig8189:153..5661683187025.0314806-CDS-P-wetherbeei_contig8189:153..566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8189 154..566 +
1683187025.0390174-CDS-P-wetherbeei_contig8189:809..10501683187025.0390174-CDS-P-wetherbeei_contig8189:809..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8189 810..1050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8189.1.1prot_P-wetherbeei_contig8189.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8189 154..1050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8189.1.1

>prot_P-wetherbeei_contig8189.1.1 ID=prot_P-wetherbeei_contig8189.1.1|Name=mRNA_P-wetherbeei_contig8189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MSLLFMLTRSCAGLSSVPHRISRPSFLPPRCRHYFSIPCLLPPLRDRRPR
RSHSNDGGDRRRDRSPGGRGGGGDNRGGGGDSRDGGGDGGGGGIGNLDFG
SLYKQVVQQGREHVIADGKNYAARPTSYKSSLSLKIDRYTHRRKSASRSP
DRDVRRAPARRRSPDGRGGNGGGSGGGRGRSQSPPPPPPRRMEKVTAESL
RRMEDLKRRYGDASAHK*
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mRNA from alignment at P-wetherbeei_contig8189:78..1433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8189.1.1 ID=mRNA_P-wetherbeei_contig8189.1.1|Name=mRNA_P-wetherbeei_contig8189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1356bp|location=Sequence derived from alignment at P-wetherbeei_contig8189:78..1433+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCTTTCTGCCTTTCTTTTGAGATTGGAACAACAGAGGCGTCGCGGCC
TGGCGCTTGCTGTAATTGACGATTGCATGTCCTTGCTTTTCATGCTAACC
CGTTCATGCGCTGGACTCTCTTCCGTGCCACACCGCATTTCCCGCCCGTC
CTTTCTCCCTCCGCGCTGCCGCCATTATTTTTCCATACCTTGTCTACTGC
CTCCTCTCAGGGATCGGCGGCCGCGGCGTTCTCACTCGAACGACGGAGGG
GACCGGCGGCGCGATCGCAGCCCCGGCGGAAGAGGCGGCGGCGGCGACAA
CCGGGGTGGCGGCGGCGACAGCCGGGATGGGGGCGGCGACGGCGGTGGCG
GCGGCATTGGCAATCTGGACTTCGGCAGCCTCTACAAGCAGGTGGTGCAG
CAGGGGCGGGAACACGTCATCGCCGACGGGAAGAACTACGCGGCGCGGCC
GACCTCATACAAGAGCTCGCTCAGCCTCAAGATTGACAGGTTGGTGTCCT
CAATCTCTCTTTTGCCGACCTGGAGAAAAGAAGTTTCAACTCGCTTTTGA
TGCTTCTTAGGATGATGGTTGCCTGTTTGGCTCCCTTGTCTCTTGTTTTA
TTTGGGACGGGGTATTGTGCAAGTCCTTCCCGCTTTCCCACTGGTTGGGA
CAAAAAGCAGTGCATTGTGTGTGTGCCTGAAGGTGCTTTCTATCCTTCTC
GAACCACCCTCCTTCACACGTTCCACTCACAGGTACACGCACCGGCGAAA
GAGCGCGTCGCGCAGCCCGGACCGCGATGTGCGGCGCGCCCCGGCGCGGC
GCCGATCGCCGGACGGCAGGGGCGGAAATGGCGGTGGCAGCGGCGGCGGT
CGGGGGCGGTCACAGAGCCCGCCGCCGCCGCCGCCGCGGCGCATGGAGAA
GGTGACCGCGGAAAGCCTGCGGCGGATGGAGGATCTGAAGCGTCGGTACG
GCGACGCTTCGGCACATAAATGAATTGGCAGAGGGATGTAGAGGGTGAGC
ATCATCGTACGCAGCTTTCTTATCTAATTGAGGCGCACGGGGCTGTGGAT
TGAGCCCTCGGTCGTGACAGCGAAGACATCAAAGCGACGGTAGCGGTGGA
TTGAGCTGTTGATGATGCGCAGCATCTGTTGTTTAGATTCAATCGTCGGT
CGGAAAAAAGAGAAAGCCAACCAAACTCCGGATTTTTTGTGGGGTGGTTA
TTCTACTGCATGACGAGACGGGAGCACTTCATAGCTATTGCCCTGCAGAG
AAACCCGACCAGTCGCAGCAAAAAACCATGGCTGCACGGCTGTCGCAGCC
GGGCTGCATTCACGCCATTTTCAGTTTTTTCACAAAATGCAGCCAGAGAA
ACAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8189:78..1433+

>mRNA_P-wetherbeei_contig8189.1.1 ID=mRNA_P-wetherbeei_contig8189.1.1|Name=mRNA_P-wetherbeei_contig8189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig8189:78..1433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTTGCTTTTCATGCTAACCCGTTCATGCGCTGGACTCTCTTCCGT
GCCACACCGCATTTCCCGCCCGTCCTTTCTCCCTCCGCGCTGCCGCCATT
ATTTTTCCATACCTTGTCTACTGCCTCCTCTCAGGGATCGGCGGCCGCGG
CGTTCTCACTCGAACGACGGAGGGGACCGGCGGCGCGATCGCAGCCCCGG
CGGAAGAGGCGGCGGCGGCGACAACCGGGGTGGCGGCGGCGACAGCCGGG
ATGGGGGCGGCGACGGCGGTGGCGGCGGCATTGGCAATCTGGACTTCGGC
AGCCTCTACAAGCAGGTGGTGCAGCAGGGGCGGGAACACGTCATCGCCGA
CGGGAAGAACTACGCGGCGCGGCCGACCTCATACAAGAGCTCGCTCAGCC
TCAAGATTGACAGGTACACGCACCGGCGAAAGAGCGCGTCGCGCAGCCCG
GACCGCGATGTGCGGCGCGCCCCGGCGCGGCGCCGATCGCCGGACGGCAG
GGGCGGAAATGGCGGTGGCAGCGGCGGCGGTCGGGGGCGGTCACAGAGCC
CGCCGCCGCCGCCGCCGCGGCGCATGGAGAAGGTGACCGCGGAAAGCCTG
CGGCGGATGGAGGATCTGAAGCGTCGGTACGGCGACGCTTCGGCACATAA
ATGA
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