mRNA_P-wetherbeei_contig8188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A482SI19_9ARCH (Thioredoxin domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI19_9ARCH) HSP 1 Score: 134 bits (336), Expect = 4.960e-34 Identity = 75/190 (39.47%), Postives = 98/190 (51.58%), Query Frame = 1
Query: 1 GMLRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADKPYTDPMRPVPRPFAGEGLSLHQLAAFVVEHSSFSPETLRAATPAQLFSVLTEEEXXXXXXXXXXXXXXXXXXXXXXHGSRVLDWAVGEVVYDGKRWHAAAGGLL 570
G+ + V+G+ TDVL+ P C C L P +L R Q+E+R L+ R+D + NDLPS+ V YP LLWFPA DKPY + P PR + G SL +LA FV SSF P++LR AT QL S L +E + +DW +GEVV+DGKRWH A +L
Sbjct: 199 GVAQRVVGSNVLDVVSKIDTDVLLAITVPGCAHCKRLLPAYELLGRAVQSESRILIARIDASANDLPSTWGVSDYPTLLWFPARDKPYKESTVPTPRQYWDAGFSLQELAGFVQRDSSFDPKSLRIATAEQLSS-LQGDEDIYRAKFEEEERVQRRNEGRIVYEVPFVDWLLGEVVFDGKRWHLGAAAVL 387
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A7S3GYC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYC8_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.430e-32 Identity = 72/186 (38.71%), Postives = 99/186 (53.23%), Query Frame = 1
Query: 4 MLRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADKPYT--DPMRPVPRPFAGEGLSLHQLAAFVVEHSSFSPETLRAATPAQLFSVLTEEEXXXXXXXXXXXXXXXXXXXXXXHGSRVLDWAVGEVVYDGKRWHAA 555
++ T +G+ PG DVL+V APWC C L PT +LAR Q E R ++ +++ ND+PSS V++YP LLWF A+DK D +PR + G SLH+LA+FV SF ++LR A+ QL S+ EE S +LD+ +GEVV+DGKRWH A
Sbjct: 24 LVVTAVGSNVMDIVNQPGKDVLLVVFAPWCTHCKKLLPTYEILARAVQNEPRIVIAKINGETNDIPSSWGVKAYPTLLWFRASDKEAVKGDFSALLPRDYWDAGYSLHELASFVQREGSFDLKSLRVASNEQLASLQGAEEALRVQYEIEERHQMRNMGRVVYEDSPLLDYFLGEVVFDGKRWHVA 209
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A836CID0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID0_9STRA) HSP 1 Score: 108 bits (269), Expect = 7.480e-24 Identity = 70/201 (34.83%), Postives = 92/201 (45.77%), Query Frame = 1
Query: 1 GMLRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADKPYTDPMRPVPRPFAGEGLSLHQLAAFVVE---------------HSSFSPETLRAATPAQLFSVLTEEEXXXXXXXXXXXXXXXXXXXXXXHGSRVLDWAVGEVVYDGKRWHAAA 558
G + ++G +FAA G D L+ +P C AL LA+LA +E+R L+ VD NDLP+SV V++YPA+LWFPA KPY D P P P+ + L + F+V+ SSF TL A Q L + S LDWA GEVV+DG+RWH AA
Sbjct: 856 GDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATL-AVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAA 1055
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A803LEN7_CHEQI (Thioredoxin domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LEN7_CHEQI) HSP 1 Score: 57.0 bits (136), Expect = 3.170e-6 Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 7 LRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADKPYTDPMRPVPRPFAGEGLSLHQLAAFV 339
+ V+G TF + +V + + PWC C A+ + LA+ F+ L ++D +VN+ P + V YPALL++PAADK ++P++ P+ SL L AF+
Sbjct: 346 IHAVVGKTFDDLVLSSSKNVFLEVYTPWCMTCDAVSKQVEKLAKHFKGLKNLLFAKIDASVNEHPK-LQVTDYPALLFYPAADK--SNPIKLQPKS------SLKDLGAFI 447
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: UPI001EB09557 (thioredoxin domain-containing protein 11-like isoform X1 n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EB09557) HSP 1 Score: 56.2 bits (134), Expect = 6.720e-6 Identity = 37/117 (31.62%), Postives = 57/117 (48.72%), Query Frame = 1
Query: 52 PGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADK------PYTDPMRPVPRPFAGEGLSLHQLAAFVVEHSSFSPETLRAAT 384
P DVL+ +A WC C + LA+ FQ+ + R++ NDLP VES+PA+++FPA K P T P+ ++ L FV++HS+ ++LR T
Sbjct: 653 PHKDVLLFVYASWCGFCANINHVYLSLAKYFQSAQSIVFARLNGDTNDLPWEFTVESFPAIIFFPANRKANSAVFPDTIPV------------TMPNLIRFVLQHST---QSLRVET 754
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A803LNE2_CHEQI (Thioredoxin domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LNE2_CHEQI) HSP 1 Score: 53.9 bits (128), Expect = 3.500e-5 Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 1
Query: 7 LRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADK 258
+ V+G TF + +V + + PWC C A + LA+ F+ L ++D +VN+ P + V YPALL++PAADK
Sbjct: 322 VHVVVGKTFDDLVLSSSKNVFLEVYTPWCMTCDAASKQVEKLAKHFKGLKNLLFAKIDASVNEHPK-LQVTDYPALLFYPAADK 404
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Match: A0A0K9QKT5_SPIOL (Uncharacterized protein n=4 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QKT5_SPIOL) HSP 1 Score: 53.1 bits (126), Expect = 6.840e-5 Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 1
Query: 7 LRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAENRFLVGRVDHAVNDLPSSVAVESYPALLWFPAADKPYTDPMRPVPRPFAGEGLSLHQLAAFV 339
+ V+G TF + +V + PWC C A + LA+ F+ + R+D +VN+ P + V YPALL++PAADK P+ P SL L AF+
Sbjct: 420 VHVVVGKTFDDLVLSSSKNVFLEVFTPWCIACDAASKQVEKLAKHFKGLKNLIFARIDASVNEHPK-LQVTDYPALLFYPAADK-----SNPIKLPSKS---SLKDLGAFI 521 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8188.1.1 >prot_P-wetherbeei_contig8188.1.1 ID=prot_P-wetherbeei_contig8188.1.1|Name=mRNA_P-wetherbeei_contig8188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp MLRTVIGATFAAAAGAPGTDVLIVAHAPWCEECVALEPTLAMLARVFQAEback to top mRNA from alignment at P-wetherbeei_contig8188:199..1359- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8188.1.1 ID=mRNA_P-wetherbeei_contig8188.1.1|Name=mRNA_P-wetherbeei_contig8188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig8188:199..1359- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8188:199..1359- >mRNA_P-wetherbeei_contig8188.1.1 ID=mRNA_P-wetherbeei_contig8188.1.1|Name=mRNA_P-wetherbeei_contig8188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig8188:199..1359- (Phaeothamnion wetherbeei SAG_119_79)back to top |