mRNA_P-wetherbeei_contig8178.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8178.2.1
Unique NamemRNA_P-wetherbeei_contig8178.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8178.2.1 vs. uniprot
Match: A0A2Z6Q4X7_9GLOM (DDE_3 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6Q4X7_9GLOM)

HSP 1 Score: 50.8 bits (120), Expect = 6.390e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 3 
Query:    3 PHLRPFHIGNKNCILIMENAPIHHDERVRELIESTGAYLLYLPNPGCGTSLQQAIFDTLR 182
            P + PF    KN ++IM+NA IHHDE + ELIE TG  ++YLP      +  +  F TL+
Sbjct:  219 PQMNPF--PGKNSVIIMDNAVIHHDEALVELIEETGGKVVYLPPYSPDFNPIETAFSTLK 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8178.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z6Q4X7_9GLOM6.390e-543.33DDE_3 domain-containing protein n=2 Tax=Rhizophagu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8178contigP-wetherbeei_contig8178:1175..1888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size364
Hectar predicted targeting categorymitochondrion
Exons2
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187024.2661488-CDS-P-wetherbeei_contig8178:1174..13041683187024.2661488-CDS-P-wetherbeei_contig8178:1174..1304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8178 1175..1304 +
1683187024.2748916-CDS-P-wetherbeei_contig8178:1656..18861683187024.2748916-CDS-P-wetherbeei_contig8178:1656..1886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8178 1657..1886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8178.2.1prot_P-wetherbeei_contig8178.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8178 1175..1886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8178.2.1

>prot_P-wetherbeei_contig8178.2.1 ID=prot_P-wetherbeei_contig8178.2.1|Name=mRNA_P-wetherbeei_contig8178.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
SPTCGRFTLGTRIASSSWKTPRSTMTNASASSSSRQAPTCCTFRIRAAAR
ASNRPSSTRCAGSHPPRPRASCGTPATPGLGIPRRRRRRPRKKATPSWPF
SVCLGDCRWGRGRTSGVLMW
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mRNA from alignment at P-wetherbeei_contig8178:1175..1888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8178.2.1 ID=mRNA_P-wetherbeei_contig8178.2.1|Name=mRNA_P-wetherbeei_contig8178.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig8178:1175..1888+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCCCACCTGCGGCCGTTTCACATTGGGAACAAGAATTGCATCCTCATC
ATGGAAAACGCCCCGATCCACCATGACGAACGCGTCCGCGAGCTCATCGA
GTCGACAGGCGCCTACCTGCTGTACCTTCCGTACGTGGCGGATTTATTTT
CTTTCTCTCTTTCTTTCTTCGGCCGCTTCCAAAATTCGATGATTCTGACC
GCATTCCTGTTTTTTTTCCCTGTGAAACTGCGGAACCGCTTTATTCCCAG
GACATCTGCCCCTGACCTCAACCTCATGGAGTGGGTATTCGCGGCCTTAG
AGGCGCGACTGAGGATGCACTGGTGAGTAGCAGAAGGGTTCTTCTAATTG
CTTCTGATCTTCCCACCCTGACCGTTCTGTCAGCCGGTTCATCCATACTT
ACCTGCGTTAGCACCCGCCTTTCTCTCTCGTCGTTTCTGTATTCTCTGCT
TCTATTGGACCCCTGTTTATGCTTTGTCATAGGAATCCGGGCTGCGGCAC
GAGCCTCCAACAGGCCATCTTCGACACGCTGCGCGGGATCACACCCGCCG
AGGCCAAGGGCTTCATGCGGGACGCCGGCTACACCCGGATTAGGGATTCC
CAGGCGGAGGCGGAGGCGGCCGAGGAAGAAGGCGACCCCCTCTTGGCCTT
TTTCTGTGTGCTTGGGGGACTGTAGGTGGGGGCGGGGACGGACAAGTGGT
GTGCTTATGTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8178:1175..1888+

>mRNA_P-wetherbeei_contig8178.2.1 ID=mRNA_P-wetherbeei_contig8178.2.1|Name=mRNA_P-wetherbeei_contig8178.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig8178:1175..1888+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCCCACCTGCGGCCGTTTCACATTGGGAACAAGAATTGCATCCTCATC
ATGGAAAACGCCCCGATCCACCATGACGAACGCGTCCGCGAGCTCATCGA
GTCGACAGGCGCCTACCTGCTGTACCTTCCGAATCCGGGCTGCGGCACGA
GCCTCCAACAGGCCATCTTCGACACGCTGCGCGGGATCACACCCGCCGAG
GCCAAGGGCTTCATGCGGGACGCCGGCTACACCCGGATTAGGGATTCCCA
GGCGGAGGCGGAGGCGGCCGAGGAAGAAGGCGACCCCCTCTTGGCCTTTT
TCTGTGTGCTTGGGGGACTGTAGGTGGGGGCGGGGACGGACAAGTGGTGT
GCTTATGTGG
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