mRNA_P-wetherbeei_contig8168.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8168.2.1
Unique NamemRNA_P-wetherbeei_contig8168.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 3.210e-124
Identity = 197/227 (86.78%), Postives = 207/227 (91.19%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N LNASDT VL+  GEL+MGIVDKKTVGSS QGLIHISWLE GWD TR FM +IQKV NNWL+A+SFSIG+ADTVAD DTI TIEGII+ AK QV SLV QGQKGELKTQPGKSMMESLEA+IN VLNKCRDDSGTSAQQSLS++NAVK MAT GSKGSFINISQILACVGQQNVEGQRIPYGFR RTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  630 NELNASDTEVLVHQGELIMGIVDKKTVGSSAQGLIHISWLEMGWDATRLFMNLIQKVTNNWLVANSFSIGIADTVADTDTIHTIEGIIDDAKGQVQSLVEQGQKGELKTQPGKSMMESLEASINIVLNKCRDDSGTSAQQSLSDKNAVKAMATAGSKGSFINISQILACVGQQNVEGQRIPYGFRHRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 856
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 3.860e-114
Identity = 184/227 (81.06%), Postives = 200/227 (88.11%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N LN SDT VLI +GEL+MG +DKKTVGS  QGLIH+SWLE+GWDVTR FM +IQK+VNNWL+  SFSIGVADTVAD +TI TI GII++AK  V SLV QGQKGEL  QPGKSMMESLE++IN VLN  RD+SGTSAQ SL+ERNAVK MA  GSKGSFINISQILACVGQQNVEGQRIPYGF+RRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  641 NPLNNSDTKVLIHEGELMMGNIDKKTVGSGAQGLIHVSWLEKGWDVTRLFMNMIQKLVNNWLVVTSFSIGVADTVADTETIMTIGGIIDTAKRNVQSLVEQGQKGELTMQPGKSMMESLESSINKVLNTARDESGTSAQVSLNERNAVKAMADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 867
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 7.340e-113
Identity = 183/230 (79.57%), Postives = 200/230 (86.96%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQ---EFFFHAMGGRE 681
            N LN SDT VLI +GEL+MG +DKKTVGS  QGLIH+SWLE+GWDVTR FM ++QK+VNNWL+  SFSIGVADTVAD +TI TI GII++AK  V SLV QGQKGEL  QPGKSMMESLE++IN VLN  RD+SGTSAQ SL+ERNAVK MA  GSKGSFINISQILACVGQQNVEGQRIPYGF+RRTLPHFAKDDLGPESRGFVENSYLRGLSPQ   EFFFHAMGGRE
Sbjct:  639 NPLNNSDTKVLIHEGELMMGNIDKKTVGSGAQGLIHVSWLEKGWDVTRLFMNMVQKLVNNWLVVTSFSIGVADTVADTETIMTIGGIIDTAKRNVQSLVEQGQKGELTMQPGKSMMESLESSINKVLNTARDESGTSAQVSLNERNAVKAMADAGSKGSFINISQILACVGQQNVEGQRIPYGFKRRTLPHFAKDDLGPESRGFVENSYLRGLSPQARAEFFFHAMGGRE 868
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: A0A7S0FQY3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQY3_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.830e-102
Identity = 155/227 (68.28%), Postives = 177/227 (77.97%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N  NA D  V + +GEL+ G +DKK +GS   GLIH +WL+ GW+  + FM  +Q VVN W L  SFSIGV DTVAD DT+R IE  I  AK QV  LV QGQ+GEL+TQPG++M+ES E  +N VLN  RD +G SAQ SL E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGFRRRTLPHF+KDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  263 NTFNAYDNEVTVIEGELIEGTIDKKNIGSGMGGLIHTAWLDAGWEENQRFMNQVQVVVNYWTLQSSFSIGVIDTVADVDTMRQIESTINKAKMQVLDLVRQGQRGELETQPGRTMIESFEQFVNRVLNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 489
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: B2KXL8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Achnanthidium minutissimum TaxID=431333 RepID=B2KXL8_9STRA)

HSP 1 Score: 306 bits (784), Expect = 3.580e-101
Identity = 150/227 (66.08%), Postives = 176/227 (77.53%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N  N  D  V I DGELL GI+ KKT+GS   GLIH +WL+ GW+ T  FM  +Q++VN+W+L +SFSIG  D VAD  T+R IE  I+ AK QV  LV QGQ GEL+ QPG++M+ES E  +N VLN  RD SG SAQ +L E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGF++RTLPHF+KDD+G ESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  130 NTFNMYDNRVTIVDGELLEGIICKKTIGSGMGGLIHTAWLDAGWEETARFMNQVQQLVNHWILQYSFSIGATDAVADPATMRQIESTIDKAKKQVQDLVRQGQLGELEIQPGRTMIESFEQLVNKVLNTARDHSGKSAQSALDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDIGSESRGFVENSYLRGLSPQEFFFHAMGGRE 356
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: B2KXL9_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Chaetoceros muellerii TaxID=265525 RepID=B2KXL9_9STRA)

HSP 1 Score: 305 bits (781), Expect = 8.980e-101
Identity = 151/224 (67.41%), Postives = 175/224 (78.12%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMG 672
            N  NA D  V+IQ+GELL G +DKKT+GS   G+IH SWL+ G + T  FM  +Q+V N W+L  SFSIGV DTVAD +T+  IE  I  AK QV  LV QGQ+G+L+TQPG++M+ES E  +N VLN  RD +G SAQ SL E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF KDDLGPESRGFVENSYLRGLSPQEFFFHAMG
Sbjct:  129 NTFNAYDHEVVIQEGELLAGTIDKKTIGSGMGGIIHTSWLDVGHEETARFMNQVQQVTNYWVLQKSFSIGVTDTVADVETMEQIETTINKAKLQVLDLVRQGQQGDLETQPGRTMVESFEQLVNKVLNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKRRTLPHFTKDDLGPESRGFVENSYLRGLSPQEFFFHAMG 352
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: B2KXL7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Navicula sp. IIG-2008 TaxID=500107 RepID=B2KXL7_9STRA)

HSP 1 Score: 305 bits (781), Expect = 9.890e-101
Identity = 150/227 (66.08%), Postives = 177/227 (77.97%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N  N  D  V IQ+GELL G +DKKT+GSS  GLIH +WL+ G + T  FM  +Q+++N+W+L +SFSIG  D VAD DT+R IE  I+ AK QV  LV QGQ GEL+ QPG++M ES E  +N VLN  RD +G SAQ SL E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGF++RTLPHF+KDD+G ESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  129 NTFNMYDHLVTIQEGELLEGTIDKKTIGSSMGGLIHTAWLDVGHEDTARFMNQVQQLINHWILQYSFSIGAIDAVADNDTMRQIESTIDKAKRQVQDLVRQGQLGELEIQPGRTMFESFEQLVNKVLNTARDHAGKSAQSSLDENNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDIGSESRGFVENSYLRGLSPQEFFFHAMGGRE 355
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: B2KXL5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ulnaria acus TaxID=1436140 RepID=B2KXL5_9STRA)

HSP 1 Score: 303 bits (775), Expect = 8.030e-100
Identity = 151/227 (66.52%), Postives = 178/227 (78.41%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N  NA D  V I +GELL G +DKKT+GS   GLIH +WL+ G+  T  FM  +Q + N+W+L  SFSIGV+D VAD +T+R IE  I  +K QV  LV QGQ+GEL+TQPG++++ES E  +N VLN  RD +G SAQ SL E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGF+RRTLPHF+KDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE
Sbjct:  129 NTFNAYDHYVTIINGELLEGTIDKKTIGSGMGGLIHTAWLDVGFWKTAQFMNQVQGLTNHWVLQSSFSIGVSDAVADVNTMRQIESTINKSKLQVLDLVRQGQRGELETQPGRTVIESFEQYVNKVLNTARDHAGKSAQGSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 355
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: B2KXM0_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Nitzschia communis TaxID=186031 RepID=B2KXM0_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.940e-99
Identity = 148/224 (66.07%), Postives = 176/224 (78.57%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMG 672
            N  NA D  V IQ+GELL G +DKK++GSS  GLIH SWL+ G + T  FM  +Q++VN W+L +SFSIG  D V+D DT+R IE  I  AK QV  LV QGQ+G+L+ QPG++M+ES E  +N VLN  RD +G SAQ SL E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGF++RTLPHF+KDDLGPESRGFVENSYLRGL+PQEFFFHAMG
Sbjct:  129 NTFNAYDHIVTIQEGELLEGTIDKKSIGSSMGGLIHTSWLDAGHEETARFMNQVQQLVNYWVLQYSFSIGACDAVSDVDTMRQIESTINKAKLQVLDLVRQGQQGKLEIQPGRTMIESFEQLVNKVLNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDLGPESRGFVENSYLRGLTPQEFFFHAMG 352
[Close]
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Match: A0A7S2K6M5_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6M5_9STRA)

HSP 1 Score: 311 bits (797), Expect = 8.350e-97
Identity = 152/227 (66.96%), Postives = 177/227 (77.97%), Query Frame = 1 
Query:    1 NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAFMGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVAQGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKHMATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGRE 681
            N  NA D  V IQ+GELL G +DKK +G+   GLIH  WL+ GW  T  FM  +QK+ N W+L +SFSIGV DTVAD +T++ IE  I  AK QV  LV QGQ+G+L+TQPG++M+ES E  +N VLN  RD +G SAQ S+ E N+VK M T GSKGSFINISQI+ACVGQQNVEG+RIPYGFRRRTLPHF KDDLGPESRGFVENSYLRGLSPQEF+FHAMGGRE
Sbjct:  608 NTFNAYDNLVTIQEGELLEGTIDKKLIGAGMGGLIHTCWLDVGWQETARFMSQVQKLTNCWVLQYSFSIGVIDTVADIETMKNIENTINRAKLQVHDLVRQGQRGDLETQPGRTMIESFEQFVNKVLNTARDHAGKSAQSSIGETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFRRRTLPHFHKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGRE 834
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8168.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC4_9STRA3.210e-12486.78DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8LRY3_ECTSI3.860e-11481.06DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE7.340e-11379.57DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S0FQY3_9STRA1.830e-10268.28DNA-directed RNA polymerase (Fragment) n=1 Tax=Min... [more]
B2KXL8_9STRA3.580e-10166.08DNA-directed RNA polymerase (Fragment) n=1 Tax=Ach... [more]
B2KXL9_9STRA8.980e-10167.41DNA-directed RNA polymerase (Fragment) n=1 Tax=Cha... [more]
B2KXL7_9STRA9.890e-10166.08DNA-directed RNA polymerase (Fragment) n=1 Tax=Nav... [more]
B2KXL5_9STRA8.030e-10066.52DNA-directed RNA polymerase (Fragment) n=1 Tax=Uln... [more]
B2KXM0_9STRA2.940e-9966.07DNA-directed RNA polymerase (Fragment) n=1 Tax=Nit... [more]
A0A7S2K6M5_9STRA8.350e-9766.96DNA-directed RNA polymerase subunit (Fragment) n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8168contigP-wetherbeei_contig8168:1348..2759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRY3
Preferred nameRPB1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5,RNA_pol_Rpb1_6,RNA_pol_Rpb1_7,RNA_pol_Rpb1_R
Model size681
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons4
Evalue6.33e-115
EggNOG OGsCOG0086@1|root,KOG0260@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size681
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187023.8610926-CDS-P-wetherbeei_contig8168:1347..14801683187023.8610926-CDS-P-wetherbeei_contig8168:1347..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8168 1348..1480 -
1683187023.8830824-CDS-P-wetherbeei_contig8168:1718..19841683187023.8830824-CDS-P-wetherbeei_contig8168:1718..1984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8168 1719..1984 -
1683187023.9055796-CDS-P-wetherbeei_contig8168:2246..23601683187023.9055796-CDS-P-wetherbeei_contig8168:2246..2360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8168 2247..2360 -
1683187023.9175222-CDS-P-wetherbeei_contig8168:2591..27591683187023.9175222-CDS-P-wetherbeei_contig8168:2591..2759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8168 2592..2759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8168.2.1prot_P-wetherbeei_contig8168.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8168 1348..2759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8168.2.1

>prot_P-wetherbeei_contig8168.2.1 ID=prot_P-wetherbeei_contig8168.2.1|Name=mRNA_P-wetherbeei_contig8168.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
NVLNASDTSVLIQDGELLMGIVDKKTVGSSPQGLIHISWLERGWDVTRAF
MGVIQKVVNNWLLAHSFSIGVADTVADADTIRTIEGIIESAKTQVGSLVA
QGQKGELKTQPGKSMMESLEANINTVLNKCRDDSGTSAQQSLSERNAVKH
MATCGSKGSFINISQILACVGQQNVEGQRIPYGFRRRTLPHFAKDDLGPE
SRGFVENSYLRGLSPQEFFFHAMGGRE
back to top

mRNA from alignment at P-wetherbeei_contig8168:1348..2759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8168.2.1 ID=mRNA_P-wetherbeei_contig8168.2.1|Name=mRNA_P-wetherbeei_contig8168.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1412bp|location=Sequence derived from alignment at P-wetherbeei_contig8168:1348..2759- (Phaeothamnion wetherbeei SAG_119_79)
AACGTCCTGAACGCGTCTGACACGTCGGTGCTGATCCAGGACGGGGAGCT
GCTGATGGGGATCGTGGACAAGAAAACGGTCGGGTCGAGCCCGCAGGGAC
TCATCCATATCTCCTGGCTCGAGCGCGGCTGGGATGTCACGCGAGCCTTC
ATGGGCGTGATTCAGAAGGTTTACTGTTCGATTCGATGGATGGCTACGTG
TATTTGGCGCGGAACTTCATGATGGTCTGCAGTGGCACTTCAGGTTGCAG
TCCGCCGCCCGTTGCCATCCGATTCAATAGAAACGGTGGGATTGGACGTT
GTCGCTGTTTTCGAATGTTTTCGAAACTGTTGCTCTGCCAGTTATGCTAA
ATTAACCGCCAACATTGCTTTGTTCGTCGCACGTGATGCTCATCACCAGG
TGGTGAACAACTGGCTGTTGGCGCACAGCTTCAGCATTGGCGTGGCCGAC
ACAGTAGCCGACGCTGATACCATCCGCACCATCGAGGGTATCATCGAGTC
CGCCAAGACCCAGGTCAGTCGCTTGGTCGATCGGCTGCTCTGGTGGATCG
TCACCACGGGTTTATGAGGCCGTCGCGATGCCCAAACAGCATGTTTCCTT
CCATTCTTTGTTGGCTGCTATGTCCCGTGCACCAGCGAAGTCTTAGCTGT
TGTGTCTGCTCCAGCCTTCCTTCCGCCCTCTTCATGCCCCTTGCCTCGCC
CAAGCTTCGTGCTAACTACGCTGCGTGCGCGTTCTCTCTCATCTCCTGCC
CGTCGCGCGCTGGATGTTGTGACAGGTGGGGAGCCTGGTGGCGCAGGGGC
AGAAGGGGGAGCTCAAGACGCAGCCGGGCAAGTCCATGATGGAGTCGCTC
GAGGCCAACATCAACACGGTGCTTAACAAGTGCCGCGATGACTCGGGCAC
CTCGGCGCAGCAATCGCTCTCGGAACGCAACGCTGTCAAGCACATGGCCA
CGTGCGGCTCCAAGGGCAGCTTCATCAACATCTCCCAGATTCTGGCGTGC
GTCGGCCAGCAGAACGTCGAGGGCCAGCGCATCCCCTACGGGTGAGGAGC
GAAGGGAAGGGGAAAGGATAGGAAAGGGAAGGTGGGCTGCGGATTGCTGC
TCTGGTCGACATTCGATTGGCGTTCCTGTATTTTCGGTGTTTCTTGGAAG
CAAGATTATGAGGCCTCCACTGACTTCAGCAGCGAAACGTTTATTCTGGG
GTACCTAGGCCACCTTTTCCTCATTGCTGGGCTCCTCCGTTCTGCGGATG
GCGTTCATCCTTTCTTCCTCGGCCGGCAGCTTTCGGCGGCGGACGCTGCC
GCACTTTGCGAAGGACGACCTGGGGCCGGAGAGCCGTGGCTTCGTGGAGA
ACTCGTATCTGCGGGGGTTGTCGCCGCAGGAGTTCTTCTTCCACGCCATG
GGCGGCCGGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8168:1348..2759-

>mRNA_P-wetherbeei_contig8168.2.1 ID=mRNA_P-wetherbeei_contig8168.2.1|Name=mRNA_P-wetherbeei_contig8168.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig8168:1348..2759- (Phaeothamnion wetherbeei SAG_119_79)
AACGTCCTGAACGCGTCTGACACGTCGGTGCTGATCCAGGACGGGGAGCT
GCTGATGGGGATCGTGGACAAGAAAACGGTCGGGTCGAGCCCGCAGGGAC
TCATCCATATCTCCTGGCTCGAGCGCGGCTGGGATGTCACGCGAGCCTTC
ATGGGCGTGATTCAGAAGGTGGTGAACAACTGGCTGTTGGCGCACAGCTT
CAGCATTGGCGTGGCCGACACAGTAGCCGACGCTGATACCATCCGCACCA
TCGAGGGTATCATCGAGTCCGCCAAGACCCAGGTGGGGAGCCTGGTGGCG
CAGGGGCAGAAGGGGGAGCTCAAGACGCAGCCGGGCAAGTCCATGATGGA
GTCGCTCGAGGCCAACATCAACACGGTGCTTAACAAGTGCCGCGATGACT
CGGGCACCTCGGCGCAGCAATCGCTCTCGGAACGCAACGCTGTCAAGCAC
ATGGCCACGTGCGGCTCCAAGGGCAGCTTCATCAACATCTCCCAGATTCT
GGCGTGCGTCGGCCAGCAGAACGTCGAGGGCCAGCGCATCCCCTACGGCT
TTCGGCGGCGGACGCTGCCGCACTTTGCGAAGGACGACCTGGGGCCGGAG
AGCCGTGGCTTCGTGGAGAACTCGTATCTGCGGGGGTTGTCGCCGCAGGA
GTTCTTCTTCCACGCCATGGGCGGCCGGGAG
back to top