mRNA_P-wetherbeei_contig8162.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8162.1.2
Unique NamemRNA_P-wetherbeei_contig8162.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A6H5KV38_9PHAE (Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV38_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.030e-69
Identity = 145/370 (39.19%), Postives = 202/370 (54.59%), Query Frame = 1
Query:    7 RAQIRLALLSWLDRPG----ALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGP-------------------------AYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEEDIAAKAAQLIDAVGQQLLQCWDKLEPAFAQVAGGNG-SGSGTPTGVLNGAGXXXXXXXXXXXXXXXXXXXXXXXXXXA------MLNEVMPLFWLCVSHEQVEVASAMMPTVARLLQTLKRQVQA 1008
            R  IR A++ WL + G    A L++ E F+RTK+AVVLALLVK+DYP  W  AF  L ++L  G                          A+++L+LR LCA+DEE+V+FHVDR+REE D N++IKD +R         +  +C +++EVV A++      LA  ALE  Q+YIGWI+I +V NE +L LF  CL S   +L   +C C+LE+VNK M  P+ KL +LQ+L+   M+++V + +E IA + A+L+D V +QLL  WDKLEPA     GG G  G G+   ++  A                                  ML E +P+ W CVSH  V+VA A    +  LLQTL+RQ QA
Sbjct:   87 RFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPESWTDAFEQLRSVLVVGSSNCSGDAAVXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIKDTMRVSNS-----VAQICGVIYEVVAAFKTEVP-QLAAFALETLQKYIGWIDIAQVVNEQFLQLFLGCLMSTDEQLVRRSCSCILEVVNKKMAHPVAKLRMLQQLKLAEMLKQVPLSDEAIAVRVAELVDGVVKQLLSVWDKLEPA---ALGGEGIGGPGSEIEMMTTAAMTSLTLPPASVQLLSPDANSAPALAATAAECSDMLQEALPMLWACVSHSDVDVAFACSDAIGCLLQTLRRQEQA 447          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 9.870e-59
Identity = 123/283 (43.46%), Postives = 171/283 (60.42%), Query Frame = 1
Query:    7 RAQIRLALLSWLDRPG----ALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGP------------------------AYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEEDIAAKAAQLIDAVGQQLLQCWDKLEPAFAQVAGGNGSGS 771
            R  IR A++ WL + G    A L++ E F+RTK+AVVLALLVK+DYP  W  AF  L ++L  G                         A+++L+LR LCA+DEE+V+FHVDR+REE D N++IKD +R         +  +C +++EVV A+ E     LA  ALE  Q+YIGWI+I +V NE +L LF  CLRS   +L   +C C+LE+VNK M  P+ KL +LQ+L+   M+++V + +E IA + A+L+D V +QLL  WDKLEPA     G  G GS
Sbjct:   87 RFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFEQLRSVLVVGSSXXXXXXXXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIKDTMRVSNA-----VAQICGVIYEVVAAF-ETEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKKMAHPVAKLRVLQQLKLAEMLKQVPLSDEAIAVRVAELVDGVVKQLLSVWDKLEPAALGGEGIGGPGS 363          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.370e-46
Identity = 107/245 (43.67%), Postives = 150/245 (61.22%), Query Frame = 1
Query:    7 RAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPG-GADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHA--ELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHME-EEDIAAKAAQLIDAVGQQLLQCWDKLE 729
            R ++R  LL WL  PG  L   E ++ TK+ VVLALL++AD+P  W  AF  L  LL RGPA++ LFLRFL AVDE++V F+  R+ EEV+ NT++KDA+R  G  AD      +  ++F  V  YR      LA  ALE   + IGWI+I  V N+  L L Y+CL       EL+ AA  CL E+V KG+ D  EKL +LQ L+ +S++ ++    +ED+AAK +QL+ ++ +QLL   D+ E
Sbjct:   93 RQRVRECLLGWLTSPGVALADVEKYIVTKVGVVLALLLRADFPERWPHAFTQLAALLPRGPAHVGLFLRFLGAVDEDVVRFNAQRSPEEVERNTLVKDAMRGTGVPAD------VARVVFTTVTTYRADLP-ELAAFALESLSKLIGWIDIALVVNDKMLQLLYDCLERADGGPELAQAAAACLEEVVLKGIADNAEKLRVLQSLRLVSVLNQLPTPADEDVAAKVSQLVSSLIEQLLILTDRAE 330          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A5D6XP74_9STRA (Exportin-T n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP74_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.760e-40
Identity = 93/238 (39.08%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   10 AQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            A++R ALL+WL    A +E   P+L+TKLAVV+ LL+K DYP  W SAF +L+ LL +G A ++++ R L A++EEIV F   R+  E  AN  IKDA+R            + AI   +V          L+ SALE  +RYI W+++  V N+  LPL +  LR + A L   A  C+ E+V+KGM  P +KL+L Q+LQ + ++R + +E++D  A +  ++++ VG +L++C D
Sbjct:   87 ARVRAALLAWLRENAAFVERKAPYLKTKLAVVVTLLIKRDYPARWPSAFAELLALLPQGAAMVEMYFRVLVAINEEIVEFDAQRSPAEAAANMRIKDAMRESAAMRDT----IDAIYNVLVHCDASAVMTELSYSALETLKRYISWVDLALVVNDRLLPLLFTLLR-ESAALRGPAANCVFEIVDKGMA-PEKKLALFQQLQLVDVLRGLPLEDDDAFAEEVGEVVNGVGLELVECMD 318          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A225UNV2_9STRA (Exportin-T (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UNV2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.540e-40
Identity = 91/238 (38.24%), Postives = 142/238 (59.66%), Query Frame = 1
Query:   16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVA--LAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            +R+ LL+WL    A +E+  P+L+TKLAVV+ LL+K DYP  W +AF +L+ LL +G + ++++ R L A++EEIV F   RT++E   N  IKDA+R  G         +  +L        EG+ V   L+ SALE  +RYI W++I  V N+   PL  + LR       C A  C+ E+++KGM  P +KL++LQ+LQ L M+  + + E+D  A +  ++I++VG +L+ C D
Sbjct:   87 VRVELLAWLQSHVAYVETKAPYLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASIVEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIKDAMRE-GSCMRESFDAIARVLVNA-----EGSDVMRQLSTSALETLKRYISWVDIGLVVNDTIWPLIIKLLRESET-FRCPAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDDEFAEEIGEVINSVGLELVTCMD 316          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: K3X0X9_GLOUD (Exportin-T n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0X9_GLOUD)

HSP 1 Score: 158 bits (399), Expect = 3.700e-39
Identity = 89/241 (36.93%), Postives = 145/241 (60.17%), Query Frame = 1
Query:    1 VSRAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            V  AQIR  LL+WL    + +E+  P+L+TKLAVV+ LL+K DYP  W +AF +L+ LL +G + ++++ R L A++EEIV F   R++ E +AN  IKDA+R              AI   +V        V L+ SALE  +RYI W++I  V N+  +PL ++ LR + A L C A  CL E+++KGM    +K++L Q+L  + ++  + ++++D  A +  ++I+ +G +L++C D
Sbjct:   83 VVSAQIRTELLTWLQENVSFVENKAPYLKTKLAVVITLLIKRDYPDRWPTAFFELMALLPKGASMVEMYFRILVAINEEIVEFDAQRSQAEANANMRIKDAMRESSTM----AETFDAIYNVLVNCDASAVMVELSYSALETLKRYISWVDIGLVVNDRIMPLLFKMLR-ESASLRCPAANCLFEVIDKGMTAE-KKVALFQQLNIIEVLGMLPIQDDDEFAEEVGEVINGIGLELVECMD 317          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: D0NEB4_PHYIT (Exportin-T n=21 Tax=Phytophthora TaxID=4783 RepID=D0NEB4_PHYIT)

HSP 1 Score: 157 bits (397), Expect = 6.810e-39
Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 1
Query:   16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLC------AILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHM-EEEDIAAKAAQLIDAVGQQLLQCWD 720
            +R+ LL+WL    A +ES  PFL+TKLAVV+ LL+K DYP  W +AF +L+ LL +G + ++++ R L A++EEIV F   RT++E   N  IKDA+R           G C      AI   +V A        L+ SALE  +RYI W++I  V N+   PL  + LR       C A  C+ E+++KGM  P +KL++LQ+LQ L M+  + + E+E+ A +  ++I++VG +L+ C D
Sbjct:   67 VRVELLAWLQSHVAYVESKSPFLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASIVEMYFRILQAINEEIVEFDAQRTQQEAAHNMRIKDAMRE----------GSCMRESFDAIARVLVNADASDVMRQLSASALETLKRYISWVDIGLVVNDTLWPLLVKLLRESET-FRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDEEFAEEIGEVINSVGVELVTCMD 296          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: H3HEF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HEF0_PHYRM)

HSP 1 Score: 155 bits (392), Expect = 3.790e-38
Identity = 92/242 (38.02%), Postives = 142/242 (58.68%), Query Frame = 1
Query:   16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLC------AILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            +R+ LL+WL    A +ES  P+L+TKLAVV+ LL+K DYP  W +AF +L+ LL +G + ++++ R L A++EEIV F   RT++E   N  IKDA+R           G C      AI   ++ A        L+ SAL+  +RYI W++I  V N+   PL  + LR+      C A  C+ E+++KGM  P +KL++LQ+LQ L M+  + + E+D  A +  ++I+AVG +L+ C D
Sbjct:   74 VRVELLAWLQSHVAYVESKAPYLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASVVEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIKDAMRE----------GSCMRESFDAIARVLMNADASDVMRQLSASALDTLKRYISWVDIGLVVNDTLWPLLMKLLRNSET-FRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDDEFAEEIGEVINAVGLELVTCMD 303          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A2D4BIY3_PYTIN (Exportin-T n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIY3_PYTIN)

HSP 1 Score: 155 bits (391), Expect = 4.250e-38
Identity = 89/239 (37.24%), Postives = 145/239 (60.67%), Query Frame = 1
Query:   10 AQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGG-ADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            A++  ALL+W+    A +E   P+L+TKLAVV+ LL+K DYP  W +AF +LI LL  G + ++++ R L A++EEIV F  +RT+ E  AN  IKDA+R     AD        AI   +V          L+ SAL+  QRYI W++I+ + N+ ++PL ++ LR + A L C A  C+ E+++KGM  P +KL+L+  L  L ++  + +++ D  A + A++++ +G +L++C D
Sbjct:   97 AEMHTALLAWMRGNVAYIEREAPYLKTKLAVVITLLIKDDYPYRWPTAFTELIALLPLGASMVEMYFRILIAINEEIVEFDANRTQLEAAANMRIKDAMRESSCMADTFD-----AIYGVLVNCDVSAVMCQLSYSALQTLQRYISWVDISLIVNDRFIPLLFKLLR-ESAVLRCPAANCIFEIIDKGML-PEKKLALITHLNLLEVLPSLPIQDXDEFAEEIAEIVNGIGLELIECMD 328          
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: M4BT63_HYAAE (Exportin-T n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BT63_HYAAE)

HSP 1 Score: 155 bits (391), Expect = 4.280e-38
Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 1
Query:   16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAI-LFEVVGAYREGAQVA-----LAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
            +R  L+ WL    A +ES  P+L+TKLAVV+ LL+K DYP  W +AF DL+ LL +G + ++++ R L A++EEIV F   RT++E   N  IKDA+R           G C    F+V+      A  +     L+ SALE+ + Y+ W++I  V N+   PL  + LR   A L C A  C+ E+++KGM  P +KL++LQ+LQ L M+  + + E+D  A +  ++I+AVG +LL C D
Sbjct:   86 VRSKLMMWLQNHVAYVESKAPYLKTKLAVVIMLLIKRDYPERWLTAFSDLLALLPQGASMVEMYFRILLAINEEIVEFEPQRTQQEAAHNMKIKDAMRE----------GSCMRESFDVISRVLVNADASEVMRDLSASALEMLKCYVSWVDIGLVVNDTLWPLLVKLLRDSEA-LRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILDMLAALPIREDDEFAEEIGEVINAVGVELLTCMD 315          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV38_9PHAE2.030e-6939.19Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FNT8_ECTSI9.870e-5943.46Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CAL0_9STRA1.370e-4643.67Exportin-T n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A5D6XP74_9STRA1.760e-4039.08Exportin-T n=1 Tax=Pythium brassicum TaxID=1485010... [more]
A0A225UNV2_9STRA9.540e-4038.24Exportin-T (Fragment) n=1 Tax=Phytophthora megakar... [more]
K3X0X9_GLOUD3.700e-3936.93Exportin-T n=1 Tax=Globisporangium ultimum (strain... [more]
D0NEB4_PHYIT6.810e-3938.84Exportin-T n=21 Tax=Phytophthora TaxID=4783 RepID=... [more]
H3HEF0_PHYRM3.790e-3838.02Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2D4BIY3_PYTIN4.250e-3837.24Exportin-T n=2 Tax=Pythium insidiosum TaxID=114742... [more]
M4BT63_HYAAE4.280e-3838.84Exportin-T n=1 Tax=Hyaloperonospora arabidopsidis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8162contigP-wetherbeei_contig8162:416..2867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNT8
PFAMsXpo1
Model size1046
Max annot lvl2759|Eukaryota
KEGG koko:K14288
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005049,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008536,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009933,GO:0010014,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016363,GO:0017016,GO:0019899,GO:0022414,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048367,GO:0048507,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061458,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071705,GO:0090567,GO:0097064,GO:0097159,GO:0140104,GO:0140142,GO:1901363
Exons7
Evalue1.62e-59
EggNOG OGsKOG2021@1|root,KOG2021@2759|Eukaryota
DescriptiontRNA re-export from nucleus
Cds size1044
COG categoryK
BRITEko00000,ko00001,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8162.1.2prot_P-wetherbeei_contig8162.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8162 416..2865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187023.5451064-CDS-P-wetherbeei_contig8162:415..5951683187023.5451064-CDS-P-wetherbeei_contig8162:415..595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 416..595 +
1683187023.5619977-CDS-P-wetherbeei_contig8162:906..10721683187023.5619977-CDS-P-wetherbeei_contig8162:906..1072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 907..1072 +
1683187023.5726106-CDS-P-wetherbeei_contig8162:1213..13291683187023.5726106-CDS-P-wetherbeei_contig8162:1213..1329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 1214..1329 +
1683187023.5833592-CDS-P-wetherbeei_contig8162:1629..17341683187023.5833592-CDS-P-wetherbeei_contig8162:1629..1734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 1630..1734 +
1683187023.593204-CDS-P-wetherbeei_contig8162:1934..20481683187023.593204-CDS-P-wetherbeei_contig8162:1934..2048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 1935..2048 +
1683187023.6046965-CDS-P-wetherbeei_contig8162:2271..25261683187023.6046965-CDS-P-wetherbeei_contig8162:2271..2526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 2272..2526 +
1683187023.6128519-CDS-P-wetherbeei_contig8162:2757..28651683187023.6128519-CDS-P-wetherbeei_contig8162:2757..2865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8162 2758..2865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8162.1.2

>prot_P-wetherbeei_contig8162.1.2 ID=prot_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=348bp
VSRAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGS
AFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKD
ALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWI
EITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSL
LQRLQPLSMVREVHMEEEDIAAKAAQLIDAVGQQLLQCWDKLEPAFAQVA
GGNGSGSGTPTGVLNGAGGGGGDAAAAAALVLQKGSAAAAVAAAAMLNEV
MPLFWLCVSHEQVEVASAMMPTVARLLQTLKRQVQAAVAAGAGAAALA
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mRNA from alignment at P-wetherbeei_contig8162:416..2867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8162.1.2 ID=mRNA_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2452bp|location=Sequence derived from alignment at P-wetherbeei_contig8162:416..2867+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTCCCGTGCGCAGATCCGACTGGCGCTGCTGTCATGGCTGGACCGGCC CGGAGCGCTCCTGGAATCTGCCGAGCCGTTCCTCAGGACGAAGCTGGCGG TGGTGCTGGCGCTTCTTGTCAAGGCCGACTACCCGCGTGTGTGGGGCTCA GCTTTCCCGGACCTCATCACTCTCCTGCAGGTCAGATTCGGACCACCCAA TCGGAGGAGAGCAACGGGCGACCGGTGGTGGCAGCTGTGGCGGCGGCAGC AGCGGCTGGCTGGCTCAGGGGAAACAGAATGTTGCGCACTTTCCCTCTTT CTTTCTCTCTTTTCCCTGGTTCGTCTTCACTCTTATTGCCTGCACAAGTG AACTTTGGGACATCGGCGGCTTGTTTCGTGAAGTTGAGTGCTTGGAGGAG TTGTCTTCGCCGCGACGTCGCGCGGTACACCTCTGCAGCGCTCGCCTGTT TTCCCATTTTGCCCCACCTGCCTTTTGGGGGATAAAAACAGCGGGGCCCG GCGTACATCGACCTCTTTCTGCGCTTCCTCTGCGCCGTCGACGAAGAGAT CGTCGCGTTTCACGTGGACCGCACCCGCGAGGAGGTGGATGCCAACACCA TCATCAAGGACGCTCTCCGGACGCCCGGCGGAGCTGACGGCCTCGGGCTG ACGGGCTGTGCTGGCGGCGGCGGCGGCAGCGCAGGCGGCGGTGGTGGCGC TGGCAGCGGAGGAAGCTCAAACGGAGTCGGTTCAACAGTTGGCGGCGACG GCGGCGGCGGCGGGGGGGGCGGGGCGGGCGCGTCGGTGGTGGGCAGAGTA TGCGCTATCCTGTTTGAGGTGGTCGGGGCGTACCGGGAAGGGGCGCAGGT GGCGCTAGCAGTGTCTGCTCTCGAGGTCTGCCAGCGGTACATCGGCTGGA TCGAGATTACCGAGGTGTGTTTCTGGCTGGCTTTGCGGCAACCCTTATTC TCTTCGCTGTTGGGGTTTTCTTGCTGGTTCCGAGAGGCGTTGTCGTCATG GTGCTGACCATTGCAGATGCAGTGTACCGATCGTATGTCTTTTCTCTGGC TGGTTTCCCGCTCACTTTCTTTTTTTGCAGTCTGCTGTGAGCCCGGCCCT TGTTAAAACCTATCTTCAATTCCTGGCCAACTGGGCTTTGTGTTGTGGTC ACTTACCTCCGACCCATTACCTTTGCTTCTGGGTTCTGCCTTTTCGGCTT GCTGGCTGCTTCAGGTGGCCAACGAGCATTATCTGCCGCTCTTCTACGAA TGCCTGAGGTCACAACACGCCGAGCTCAGCTGTGCTGCCTGCGGCTGCCT GCTAGAAATGGTGAACAAGGTGAGAAATAGAAGAAAACTTTACTTCTTTT TTGGTCTCGGTTGCTTTCTTTGTGGTTTGATTCCTGCTTGAGCTGTCTTT CTGGCATCTCAGCTCACGTGCGTCAGCCGCCGCCGCCGCCGTTGTCTTGA ATTCCCTGGGGCGCATTGCTTTGCCTGCGGGCGCCTCGTGTCATGGCCCG TCTCTCGTCGTGAAATCAGGGCATGGAGGACCCGCTGGAGAAGCTGTCGC TATTGCAGCGGCTGCAGCCGCTGTCGATGGTGCGGGAGGTGCACATGGAG GAGGAAGACATCGCCGCCAAGGCTGCACAACTCGTAAGTTCCGTTAGCGG TGCACGGCCCTTCTTAATTCTGCTGCGTAGTTTTTTTCTGCTGCGATGCA GCGCCAAGAGAGGCAGTGGTGGCAAGAGAACGACGATCGCCGTCGTGTTG AGGCAGTACGTTCACATGAAGGAATTTCCTTCCTTCTTCTCATGTTTGCG AGACATTGCCGTGCGTTTCTGCTACCTCGGATGATTTCTTCGTGATCGTC CCGCAGATCGATGCGGTGGGGCAGCAGCTGCTGCAGTGCTGGGACAAGCT GGAGCCCGCGTTTGCACAGGTCGCAGGCGGCAACGGCTCCGGGAGCGGGA CACCGACCGGCGTCCTCAACGGTGCCGGCGGCGGCGGCGGGGACGCGGCG GCGGCGGCGGCGCTTGTGCTTCAGAAAGGGAGCGCCGCCGCGGCCGTCGC GGCGGCGGCAATGCTCAACGAGGTCATGCCGCTGTTCTGGCTGTGCGTGA GCCACGAGCAGGTATATCAGGCCGCCCAGAGAGGAGCCGGAACATTTTGA TATTCTTCTGCGTGTTCTATGAGCATTCTATCTCGTAGCAAACCTGCGTT TTGCATGGTGCCATCACCTGCGCGTATTCGCATGCTGACAGAATTTGAAT CGCGTTCTTTTTTCTTTCCAGTAAAAAAAGTCGGTAGGCAAGCTGATCCT TCTTTCCGTTAACCCGGCCTTCCGTTAAAACGCGGCGTTCAGGTGGAGGT GGCGAGCGCGATGATGCCAACGGTGGCACGGCTGCTGCAGACGTTAAAGC GACAAGTCCAAGCCGCCGTAGCGGCGGGGGCCGGCGCCGCAGCGCTGGCG GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8162:416..2867+

>mRNA_P-wetherbeei_contig8162.1.2 ID=mRNA_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1044bp|location=Sequence derived from alignment at P-wetherbeei_contig8162:416..2867+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTCCCGTGCGCAGATCCGACTGGCGCTGCTGTCATGGCTGGACCGGCC
CGGAGCGCTCCTGGAATCTGCCGAGCCGTTCCTCAGGACGAAGCTGGCGG
TGGTGCTGGCGCTTCTTGTCAAGGCCGACTACCCGCGTGTGTGGGGCTCA
GCTTTCCCGGACCTCATCACTCTCCTGCAGCGGGGCCCGGCGTACATCGA
CCTCTTTCTGCGCTTCCTCTGCGCCGTCGACGAAGAGATCGTCGCGTTTC
ACGTGGACCGCACCCGCGAGGAGGTGGATGCCAACACCATCATCAAGGAC
GCTCTCCGGACGCCCGGCGGAGCTGACGGCCTCGGGCTGACGGGCTTATG
CGCTATCCTGTTTGAGGTGGTCGGGGCGTACCGGGAAGGGGCGCAGGTGG
CGCTAGCAGTGTCTGCTCTCGAGGTCTGCCAGCGGTACATCGGCTGGATC
GAGATTACCGAGGTGGCCAACGAGCATTATCTGCCGCTCTTCTACGAATG
CCTGAGGTCACAACACGCCGAGCTCAGCTGTGCTGCCTGCGGCTGCCTGC
TAGAAATGGTGAACAAGGGCATGGAGGACCCGCTGGAGAAGCTGTCGCTA
TTGCAGCGGCTGCAGCCGCTGTCGATGGTGCGGGAGGTGCACATGGAGGA
GGAAGACATCGCCGCCAAGGCTGCACAACTCATCGATGCGGTGGGGCAGC
AGCTGCTGCAGTGCTGGGACAAGCTGGAGCCCGCGTTTGCACAGGTCGCA
GGCGGCAACGGCTCCGGGAGCGGGACACCGACCGGCGTCCTCAACGGTGC
CGGCGGCGGCGGCGGGGACGCGGCGGCGGCGGCGGCGCTTGTGCTTCAGA
AAGGGAGCGCCGCCGCGGCCGTCGCGGCGGCGGCAATGCTCAACGAGGTC
ATGCCGCTGTTCTGGCTGTGCGTGAGCCACGAGCAGGTGGAGGTGGCGAG
CGCGATGATGCCAACGGTGGCACGGCTGCTGCAGACGTTAAAGCGACAAG
TCCAAGCCGCCGTAGCGGCGGGGGCCGGCGCCGCAGCGCTGGCG
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