mRNA_P-wetherbeei_contig8162.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A6H5KV38_9PHAE (Exportin-T (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV38_9PHAE) HSP 1 Score: 233 bits (595), Expect = 2.030e-69 Identity = 145/370 (39.19%), Postives = 202/370 (54.59%), Query Frame = 1
Query: 7 RAQIRLALLSWLDRPG----ALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGP-------------------------AYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEEDIAAKAAQLIDAVGQQLLQCWDKLEPAFAQVAGGNG-SGSGTPTGVLNGAGXXXXXXXXXXXXXXXXXXXXXXXXXXA------MLNEVMPLFWLCVSHEQVEVASAMMPTVARLLQTLKRQVQA 1008
R IR A++ WL + G A L++ E F+RTK+AVVLALLVK+DYP W AF L ++L G A+++L+LR LCA+DEE+V+FHVDR+REE D N++IKD +R + +C +++EVV A++ LA ALE Q+YIGWI+I +V NE +L LF CL S +L +C C+LE+VNK M P+ KL +LQ+L+ M+++V + +E IA + A+L+D V +QLL WDKLEPA GG G G G+ ++ A ML E +P+ W CVSH V+VA A + LLQTL+RQ QA
Sbjct: 87 RFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPESWTDAFEQLRSVLVVGSSNCSGDAAVXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIKDTMRVSNS-----VAQICGVIYEVVAAFKTEVP-QLAAFALETLQKYIGWIDIAQVVNEQFLQLFLGCLMSTDEQLVRRSCSCILEVVNKKMAHPVAKLRMLQQLKLAEMLKQVPLSDEAIAVRVAELVDGVVKQLLSVWDKLEPA---ALGGEGIGGPGSEIEMMTTAAMTSLTLPPASVQLLSPDANSAPALAATAAECSDMLQEALPMLWACVSHSDVDVAFACSDAIGCLLQTLRRQEQA 447
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI) HSP 1 Score: 214 bits (546), Expect = 9.870e-59 Identity = 123/283 (43.46%), Postives = 171/283 (60.42%), Query Frame = 1
Query: 7 RAQIRLALLSWLDRPG----ALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGP------------------------AYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEEDIAAKAAQLIDAVGQQLLQCWDKLEPAFAQVAGGNGSGS 771
R IR A++ WL + G A L++ E F+RTK+AVVLALLVK+DYP W AF L ++L G A+++L+LR LCA+DEE+V+FHVDR+REE D N++IKD +R + +C +++EVV A+ E LA ALE Q+YIGWI+I +V NE +L LF CLRS +L +C C+LE+VNK M P+ KL +LQ+L+ M+++V + +E IA + A+L+D V +QLL WDKLEPA G G GS
Sbjct: 87 RFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFEQLRSVLVVGSSXXXXXXXXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIKDTMRVSNA-----VAQICGVIYEVVAAF-ETEVPQLAAFALETLQKYIGWIDIAQVVNERFLQLFLGCLRSTDEQLVRRSCSCILEVVNKKMAHPVAKLRVLQQLKLAEMLKQVPLSDEAIAVRVAELVDGVVKQLLSVWDKLEPAALGGEGIGGPGS 363
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.370e-46 Identity = 107/245 (43.67%), Postives = 150/245 (61.22%), Query Frame = 1
Query: 7 RAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPG-GADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHA--ELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHME-EEDIAAKAAQLIDAVGQQLLQCWDKLE 729
R ++R LL WL PG L E ++ TK+ VVLALL++AD+P W AF L LL RGPA++ LFLRFL AVDE++V F+ R+ EEV+ NT++KDA+R G AD + ++F V YR LA ALE + IGWI+I V N+ L L Y+CL EL+ AA CL E+V KG+ D EKL +LQ L+ +S++ ++ +ED+AAK +QL+ ++ +QLL D+ E
Sbjct: 93 RQRVRECLLGWLTSPGVALADVEKYIVTKVGVVLALLLRADFPERWPHAFTQLAALLPRGPAHVGLFLRFLGAVDEDVVRFNAQRSPEEVERNTLVKDAMRGTGVPAD------VARVVFTTVTTYRADLP-ELAAFALESLSKLIGWIDIALVVNDKMLQLLYDCLERADGGPELAQAAAACLEEVVLKGIADNAEKLRVLQSLRLVSVLNQLPTPADEDVAAKVSQLVSSLIEQLLILTDRAE 330
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A5D6XP74_9STRA (Exportin-T n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP74_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.760e-40 Identity = 93/238 (39.08%), Postives = 143/238 (60.08%), Query Frame = 1
Query: 10 AQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
A++R ALL+WL A +E P+L+TKLAVV+ LL+K DYP W SAF +L+ LL +G A ++++ R L A++EEIV F R+ E AN IKDA+R + AI +V L+ SALE +RYI W+++ V N+ LPL + LR + A L A C+ E+V+KGM P +KL+L Q+LQ + ++R + +E++D A + ++++ VG +L++C D
Sbjct: 87 ARVRAALLAWLRENAAFVERKAPYLKTKLAVVVTLLIKRDYPARWPSAFAELLALLPQGAAMVEMYFRVLVAINEEIVEFDAQRSPAEAAANMRIKDAMRESAAMRDT----IDAIYNVLVHCDASAVMTELSYSALETLKRYISWVDLALVVNDRLLPLLFTLLR-ESAALRGPAANCVFEIVDKGMA-PEKKLALFQQLQLVDVLRGLPLEDDDAFAEEVGEVVNGVGLELVECMD 318
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A225UNV2_9STRA (Exportin-T (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UNV2_9STRA) HSP 1 Score: 155 bits (392), Expect = 9.540e-40 Identity = 91/238 (38.24%), Postives = 142/238 (59.66%), Query Frame = 1
Query: 16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVA--LAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
+R+ LL+WL A +E+ P+L+TKLAVV+ LL+K DYP W +AF +L+ LL +G + ++++ R L A++EEIV F RT++E N IKDA+R G + +L EG+ V L+ SALE +RYI W++I V N+ PL + LR C A C+ E+++KGM P +KL++LQ+LQ L M+ + + E+D A + ++I++VG +L+ C D
Sbjct: 87 VRVELLAWLQSHVAYVETKAPYLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASIVEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIKDAMRE-GSCMRESFDAIARVLVNA-----EGSDVMRQLSTSALETLKRYISWVDIGLVVNDTIWPLIIKLLRESET-FRCPAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDDEFAEEIGEVINSVGLELVTCMD 316
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: K3X0X9_GLOUD (Exportin-T n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0X9_GLOUD) HSP 1 Score: 158 bits (399), Expect = 3.700e-39 Identity = 89/241 (36.93%), Postives = 145/241 (60.17%), Query Frame = 1
Query: 1 VSRAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
V AQIR LL+WL + +E+ P+L+TKLAVV+ LL+K DYP W +AF +L+ LL +G + ++++ R L A++EEIV F R++ E +AN IKDA+R AI +V V L+ SALE +RYI W++I V N+ +PL ++ LR + A L C A CL E+++KGM +K++L Q+L + ++ + ++++D A + ++I+ +G +L++C D
Sbjct: 83 VVSAQIRTELLTWLQENVSFVENKAPYLKTKLAVVITLLIKRDYPDRWPTAFFELMALLPKGASMVEMYFRILVAINEEIVEFDAQRSQAEANANMRIKDAMRESSTM----AETFDAIYNVLVNCDASAVMVELSYSALETLKRYISWVDIGLVVNDRIMPLLFKMLR-ESASLRCPAANCLFEVIDKGMTAE-KKVALFQQLNIIEVLGMLPIQDDDEFAEEVGEVINGIGLELVECMD 317
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: D0NEB4_PHYIT (Exportin-T n=21 Tax=Phytophthora TaxID=4783 RepID=D0NEB4_PHYIT) HSP 1 Score: 157 bits (397), Expect = 6.810e-39 Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 1
Query: 16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLC------AILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHM-EEEDIAAKAAQLIDAVGQQLLQCWD 720
+R+ LL+WL A +ES PFL+TKLAVV+ LL+K DYP W +AF +L+ LL +G + ++++ R L A++EEIV F RT++E N IKDA+R G C AI +V A L+ SALE +RYI W++I V N+ PL + LR C A C+ E+++KGM P +KL++LQ+LQ L M+ + + E+E+ A + ++I++VG +L+ C D
Sbjct: 67 VRVELLAWLQSHVAYVESKSPFLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASIVEMYFRILQAINEEIVEFDAQRTQQEAAHNMRIKDAMRE----------GSCMRESFDAIARVLVNADASDVMRQLSASALETLKRYISWVDIGLVVNDTLWPLLVKLLRESET-FRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDEEFAEEIGEVINSVGVELVTCMD 296
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: H3HEF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HEF0_PHYRM) HSP 1 Score: 155 bits (392), Expect = 3.790e-38 Identity = 92/242 (38.02%), Postives = 142/242 (58.68%), Query Frame = 1
Query: 16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLC------AILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
+R+ LL+WL A +ES P+L+TKLAVV+ LL+K DYP W +AF +L+ LL +G + ++++ R L A++EEIV F RT++E N IKDA+R G C AI ++ A L+ SAL+ +RYI W++I V N+ PL + LR+ C A C+ E+++KGM P +KL++LQ+LQ L M+ + + E+D A + ++I+AVG +L+ C D
Sbjct: 74 VRVELLAWLQSHVAYVESKAPYLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASVVEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIKDAMRE----------GSCMRESFDAIARVLMNADASDVMRQLSASALDTLKRYISWVDIGLVVNDTLWPLLMKLLRNSET-FRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILEMLAALPIREDDEFAEEIGEVINAVGLELVTCMD 303
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: A0A2D4BIY3_PYTIN (Exportin-T n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIY3_PYTIN) HSP 1 Score: 155 bits (391), Expect = 4.250e-38 Identity = 89/239 (37.24%), Postives = 145/239 (60.67%), Query Frame = 1
Query: 10 AQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGG-ADGLGLTGLCAILFEVVGAYREGAQVALAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
A++ ALL+W+ A +E P+L+TKLAVV+ LL+K DYP W +AF +LI LL G + ++++ R L A++EEIV F +RT+ E AN IKDA+R AD AI +V L+ SAL+ QRYI W++I+ + N+ ++PL ++ LR + A L C A C+ E+++KGM P +KL+L+ L L ++ + +++ D A + A++++ +G +L++C D
Sbjct: 97 AEMHTALLAWMRGNVAYIEREAPYLKTKLAVVITLLIKDDYPYRWPTAFTELIALLPLGASMVEMYFRILIAINEEIVEFDANRTQLEAAANMRIKDAMRESSCMADTFD-----AIYGVLVNCDVSAVMCQLSYSALQTLQRYISWVDISLIVNDRFIPLLFKLLR-ESAVLRCPAANCIFEIIDKGML-PEKKLALITHLNLLEVLPSLPIQDXDEFAEEIAEIVNGIGLELIECMD 328
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Match: M4BT63_HYAAE (Exportin-T n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BT63_HYAAE) HSP 1 Score: 155 bits (391), Expect = 4.280e-38 Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 1
Query: 16 IRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSAFPDLITLLQRGPAYIDLFLRFLCAVDEEIVAFHVDRTREEVDANTIIKDALRTPGGADGLGLTGLCAI-LFEVVGAYREGAQVA-----LAVSALEVCQRYIGWIEITEVANEHYLPLFYECLRSQHAELSCAACGCLLEMVNKGMEDPLEKLSLLQRLQPLSMVREVHMEEED-IAAKAAQLIDAVGQQLLQCWD 720
+R L+ WL A +ES P+L+TKLAVV+ LL+K DYP W +AF DL+ LL +G + ++++ R L A++EEIV F RT++E N IKDA+R G C F+V+ A + L+ SALE+ + Y+ W++I V N+ PL + LR A L C A C+ E+++KGM P +KL++LQ+LQ L M+ + + E+D A + ++I+AVG +LL C D
Sbjct: 86 VRSKLMMWLQNHVAYVESKAPYLKTKLAVVIMLLIKRDYPERWLTAFSDLLALLPQGASMVEMYFRILLAINEEIVEFEPQRTQQEAAHNMKIKDAMRE----------GSCMRESFDVISRVLVNADASEVMRDLSASALEMLKCYVSWVDIGLVVNDTLWPLLVKLLRDSEA-LRCQAANCVFEVIDKGMT-PEKKLAMLQQLQILDMLAALPIREDDEFAEEIGEVINAVGVELLTCMD 315 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8162.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8162.1.2 >prot_P-wetherbeei_contig8162.1.2 ID=prot_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=348bp VSRAQIRLALLSWLDRPGALLESAEPFLRTKLAVVLALLVKADYPRVWGSback to top mRNA from alignment at P-wetherbeei_contig8162:416..2867+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8162.1.2 ID=mRNA_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2452bp|location=Sequence derived from alignment at P-wetherbeei_contig8162:416..2867+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8162:416..2867+ >mRNA_P-wetherbeei_contig8162.1.2 ID=mRNA_P-wetherbeei_contig8162.1.2|Name=mRNA_P-wetherbeei_contig8162.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1044bp|location=Sequence derived from alignment at P-wetherbeei_contig8162:416..2867+ (Phaeothamnion wetherbeei SAG_119_79)back to top |