mRNA_P-wetherbeei_contig8159.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8159.1.1
Unique NamemRNA_P-wetherbeei_contig8159.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: A0A7S1XNR9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNR9_9STRA)

HSP 1 Score: 156 bits (395), Expect = 5.890e-40
Identity = 89/227 (39.21%), Postives = 140/227 (61.67%), Query Frame = 1 
Query:    4 AEQLEERRVEEWQRDWAEKEKERTVAHQKLLD-GVLRHPDNDREKRLRSELLAEIKRRAKEVLNLADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQEMTAAAAVYEKEQLEKEXXRKRKFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPEDAWVVMDGAFDLKYYHNPRSGDIAWRPPGA 681
            A +LEE RV+ W +DW E+  +R  AH+K L+  VL +P    EK+L  EL  EIK R K V+  AD++N  +E+P+A  +ARE+V+ +R+ +ER RV+ EM  AA  YE  + +++   +  FE+ R  + + AA +IQ M R + A+ E+R +   VY K FDP + A +Y +++ G  +W +P +LG YD+D +D W++M      +YY NP++ D+ W  P A
Sbjct:  626 ANRLEEARVDNWLKDWEEEANKRAEAHRKFLEENVLGNPMTPEEKKLEKELHKEIKERGKVVIKAADKRNIPMEIPEAEVVAREEVLVKRMNDERLRVRDEMLKAAQEYEDAKAKEDEEERIAFEAERERNREFAATRIQAMGRRYAATRELREIGFRVYKKHFDPRTGAYYYEDKRTGQTQWHKPPSLGSYDVDVKDKWILMTDVEGREYYFNPKTMDMQWDRPAA 852
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: A0A835Z473_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z473_9STRA)

HSP 1 Score: 147 bits (372), Expect = 6.300e-40
Identity = 87/180 (48.33%), Postives = 114/180 (63.33%), Query Frame = 1 
Query:  112 HPDNDREKRLRSELLAEIKRRAKEVLNLADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQEMTAAAAVYEKEQLEKEXXRKRKFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPEDAWVVMDGAFDLKYYHNPRS 651
            HP+   E  LR+ L AEI   +K V+ LAD+Q  +LE P+AMEIA+E V+ RR++EER +VK+EM AAA   E E+   E  RK +  +      + AA KIQR+Y  +RA   VRRLA   Y K FD AS A ++ N  + TV W +P  LG YD+DP D W VM GA+DL YY+NPR+
Sbjct:    2 HPETSEEAALRAGLQAEIXXESKAVIKLADDQRIDLEWPEAMEIAKEQVLKRRMDEERRQVKKEMEAAAKALEIEEAAAEAERKTRRLAAMNALSEGAASKIQRVYAQYRAREYVRRLAMATYEKHFDVASGAYWWSNPLIKTVSWAKPPLLGAYDVDPPDEWAVMPGAYDLVYYYNPRT 181
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: D7FJ63_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ63_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.330e-38
Identity = 81/203 (39.90%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:   91 LLDGVLRHPDNDREKRLRSELLAEIKRRAKEVLNLADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQEMTAAAAVYEKEQLEKEXXRKRKFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPEDAWVVMDGAFDLKYYHNPRSGDIAWRPPGATLPCQD 699
            +L+ VL HPDN+ EK L+  L AEI+ + K VL +AD+  A+LE P+A++IA+ED++  ++++ER RV QEM AAAA + +E+   +  ++ K    R      AAR IQ+MY ++ A+   ++ A+ VY K FD  + A ++ N  + T  W +P  LG +D+DPED W V+ G+++L YY NP+S  + W  P  T+ C++
Sbjct:    1 MLEAVLAHPDNEPEKALQKTLKAEIEAQKKVVLKMADDVEADLEAPEALDIAKEDILLSKMDQERERVNQEMKAAAAKFLEEEARVKADKEEKMTKFRDSACDAAARTIQQMYYVFSATRITQKRAKEVYTKHFDSENLAFYWHNTLIDTYLWEKPTGLGGWDVDPEDRWEVIPGSYNLHYYFNPKSYTMQWSQPAGTVICKE 203
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: A0A6H5JES2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.920e-37
Identity = 85/197 (43.15%), Postives = 130/197 (65.99%), Query Frame = 1 
Query:    4 AEQLEERRVEEWQRDWAEKEKERTVAHQKLLDGVLRHPDNDREKRLRSELLAEIKRRAKEVLNLADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQEMTAAAAVYEKEQLEKEXXRKRKFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPED 594
            AE+ EE+RVE+WQ +WAEK + R +AH+K+L+ VL HPDN+ EK L+  L AEI+ + K VL +AD+  A+LE P+A++IA+ED++  ++++ER RV QEM AAAA +  E+   +  ++ K    R      AAR IQ+MY ++ A+   ++ A+ VY K FD  + A ++ N  + T  W +P  LG +D+DPED
Sbjct:  604 AERFEEQRVEQWQIEWAEKGETRAIAHRKMLEAVLAHPDNEPEKALQKTLKAEIEAQKKVVLKMADDAEADLEAPEALDIAKEDILLSKMDQERERVNQEMKAAAAKFLAEEARVKADKEEKMTKFRGSACDAAARTIQQMYYVFSATRITQKRAKEVYTKHFDSENLAFYWHNTLIDTYLWKKPTGLGGWDVDPED 800
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: A0A7R9YBT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.150e-22
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 1 
Query:  196 ADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQEMTAAAAVYEKEQLEKEXXRKRKFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPEDAWVVMDGAFDLKYYHNPRSGDIAWRPP 675
            A+++   +E+ +A EIARE+V+ +R+ EER +V+++M  A   Y+ E+    XX  +K E+     +  +A  IQ +YR   A  E+R LA  VY K FDP S A +Y +R+ G  +W +P +LG YD+D +D W+ +    D  YY NP++  + W  P
Sbjct:    3 AEKRQLPVEVVEAEEIAREEVLVKRMNEERRKVREDMQRAEEEYQAEKAXXXXXXXKKAEAQMERTKVYSATLIQSIYRSMVARKELRHLAYDVYRKHFDPKSGAYYYEDRRTGATQWLKPPSLGGYDVDAKDEWMQITDIEDRVYYFNPKTMQMQWDKP 162
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BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Match: A0A1W0AA40_9STRA (WW domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA40_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-5
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  367 KFESNRRDHEQVAARKIQRMYRIWRASTEVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDI 582
            KFE+ RR +  +AA KIQ +YR  +A T++R + +GV+ K  D  +   FY N   G  +WT+P  LG  D+
Sbjct:  523 KFETPRRQN--IAATKIQGLYRSLKARTKLREMIKGVFTKCLDTQTQRYFYYNSATGASQWTKPLGLGKSDL 592
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S1XNR9_9STRA5.890e-4039.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z473_9STRA6.300e-4048.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJ63_ECTSI1.330e-3839.90WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JES2_9PHAE2.920e-3743.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YBT0_9STRA1.150e-2236.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1W0AA40_9STRA2.490e-540.28WW domain-containing protein n=1 Tax=Thraustotheca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8159contigP-wetherbeei_contig8159:1029..2744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps1372
Model size739
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.18e-18
EggNOG OGs28M2Y@1|root,2QTJN@2759|Eukaryota,2XEYI@2836|Bacillariophyta
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size735
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187023.455834-CDS-P-wetherbeei_contig8159:1028..10881683187023.455834-CDS-P-wetherbeei_contig8159:1028..1088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8159 1029..1088 +
1683187023.4672143-CDS-P-wetherbeei_contig8159:1368..15391683187023.4672143-CDS-P-wetherbeei_contig8159:1368..1539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8159 1369..1539 +
1683187023.4770322-CDS-P-wetherbeei_contig8159:1776..18921683187023.4770322-CDS-P-wetherbeei_contig8159:1776..1892Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8159 1777..1892 +
1683187023.4893157-CDS-P-wetherbeei_contig8159:2077..21831683187023.4893157-CDS-P-wetherbeei_contig8159:2077..2183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8159 2078..2183 +
1683187023.5068107-CDS-P-wetherbeei_contig8159:2460..27421683187023.5068107-CDS-P-wetherbeei_contig8159:2460..2742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8159 2461..2742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8159.1.1prot_P-wetherbeei_contig8159.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8159 1029..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8159.1.1

>prot_P-wetherbeei_contig8159.1.1 ID=prot_P-wetherbeei_contig8159.1.1|Name=mRNA_P-wetherbeei_contig8159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
LAEQLEERRVEEWQRDWAEKEKERTVAHQKLLDGVLRHPDNDREKRLRSE
LLAEIKRRAKEVLNLADEQNAELEMPQAMEIAREDVIGRRVEEERARVKQ
EMTAAAAVYEKEQLEKEEERKRKFESNRRDHEQVAARKIQRMYRIWRAST
EVRRLAEGVYIKRFDPASHACFYLNRQLGTVRWTRPAALGPYDIDPEDAW
VVMDGAFDLKYYHNPRSGDIAWRPPGATLPCQDSAVGGGGGGGGG
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mRNA from alignment at P-wetherbeei_contig8159:1029..2744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8159.1.1 ID=mRNA_P-wetherbeei_contig8159.1.1|Name=mRNA_P-wetherbeei_contig8159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1716bp|location=Sequence derived from alignment at P-wetherbeei_contig8159:1029..2744+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCCGAACAGCTCGAGGAGCGGCGTGTCGAGGAATGGCAGCGCGACTG
GGCCGAAAAGGTGAGCGAACGACAGAACAAACGGCTACTTGAAGTCCATT
TCCACCATGTCAGGCAATCCGCTCTCTCAGGGGAAAATGCGAAGATCTGC
CTTGTCCGAAAGTTATTTGCATGTAGGCGCCTTCGGGCGGTTGCCATCTT
CCGCGACATCGCTGCCACCGCCGCCGCCGCTGTTGCCCCTGCCGCCGACT
GTCTCTGTTGCCGCTGCTGACGGCCGCCACAATCACCGCGTTCGCTCTGC
CGTTGCAACCAACTCTATGCCACCATTTCCCTCCTTTCAGGAAAAGGAGC
GGACGGTTGCGCACCAGAAACTGCTGGACGGCGTGCTGCGGCACCCGGAC
AACGATCGCGAGAAGCGGCTGCGATCGGAGCTGCTGGCGGAGATCAAGAG
GCGGGCCAAGGAGGTGCTCAACCTCGCCGACGAGCAGAATGCCGAGCTGG
AAATGCCGCAGGTCAGGAGAAGGCGAAGGGGGTTTCTGAAATCTGCTGGC
CTGTTTTATCGCGGGCATTCTGTCCAAATGTCCCCTTCGGTCTTTGGAGC
CGGAAAACGTCATTTTTTAGCGATACCTCGCACAGCACCAGCTTCTGGCA
CCGCTGTCGCGGTGCCACTGCCACACGCCATTCACCACCTGATGCCACCG
CCGCCAGCGCCGCCACCGCATCGCCGCCGATCGTCGCCACCATTGCAGGC
GATGGAGATCGCGCGAGAAGACGTGATTGGGCGGCGGGTGGAGGAAGAAC
GCGCACGCGTGAAGCAGGAGATGACGGCGGCGGCGGCGGTCTACGAGAAG
GAGCAACTGGAAAAGTGAGTTCTGTATCGGCTGTTATGGTTGGTGGGATC
AACGGCTGCCATTCAGAATTTTTTGTGTCGGTCAGAGCTAACTAGGACAA
GTGTTTTATGGTGCTATCGCATGCCTGGCAGCTCCTTACCGTGCCTTCTC
CGCCTGGCCCGCCTGGTGCGATGCTCTGGCGCCGCCGTCACCGCCACAGG
GAGGAAGAGCGGAAGCGAAAGTTCGAGAGCAACCGGAGGGACCATGAGCA
GGTCGCCGCCCGCAAGATTCAGCGCATGTATCGCATCTGGCGCGCCTCAA
CCGAGGTTAGAATAGCGGGCTGGCCTGGGCGAGATGGAGAAGCAGCGTCA
TTTCGCCTTAACCTGCTACTTGTTTCTGTGGGGAATGGAGCCTTCATTTC
GCCTGCCGCCCTCTGTCTCCGGCCAACACCAGCCAAACGTCGGCCGCCTG
ACTTCTGCGTCCTGCCCTCCATCTCCCACACTTTGCCGCCCGCCACTTAT
TCCCCGTCTCCAACCATCTAGAAACAAAACCCCCACACCGAAGATAAAAC
CCCAAACCGCTTCCCCAAAACAAAACAAAAAGGTACGGCGGCTGGCCGAA
GGCGTCTACATCAAGCGCTTCGACCCGGCCTCCCACGCCTGCTTCTACCT
CAACCGCCAGCTCGGCACCGTCCGCTGGACGCGCCCGGCCGCCCTGGGCC
CTTATGACATTGACCCGGAGGATGCCTGGGTCGTTATGGACGGCGCCTTC
GACCTCAAGTACTACCACAATCCGCGATCGGGCGATATCGCCTGGCGTCC
GCCGGGCGCCACACTGCCCTGCCAGGACAGCGCGGTCGGTGGTGGTGGCG
GTGGTGGTGGCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8159:1029..2744+

>mRNA_P-wetherbeei_contig8159.1.1 ID=mRNA_P-wetherbeei_contig8159.1.1|Name=mRNA_P-wetherbeei_contig8159.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig8159:1029..2744+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCCGAACAGCTCGAGGAGCGGCGTGTCGAGGAATGGCAGCGCGACTG
GGCCGAAAAGGAAAAGGAGCGGACGGTTGCGCACCAGAAACTGCTGGACG
GCGTGCTGCGGCACCCGGACAACGATCGCGAGAAGCGGCTGCGATCGGAG
CTGCTGGCGGAGATCAAGAGGCGGGCCAAGGAGGTGCTCAACCTCGCCGA
CGAGCAGAATGCCGAGCTGGAAATGCCGCAGGCGATGGAGATCGCGCGAG
AAGACGTGATTGGGCGGCGGGTGGAGGAAGAACGCGCACGCGTGAAGCAG
GAGATGACGGCGGCGGCGGCGGTCTACGAGAAGGAGCAACTGGAAAAGGA
GGAAGAGCGGAAGCGAAAGTTCGAGAGCAACCGGAGGGACCATGAGCAGG
TCGCCGCCCGCAAGATTCAGCGCATGTATCGCATCTGGCGCGCCTCAACC
GAGGTACGGCGGCTGGCCGAAGGCGTCTACATCAAGCGCTTCGACCCGGC
CTCCCACGCCTGCTTCTACCTCAACCGCCAGCTCGGCACCGTCCGCTGGA
CGCGCCCGGCCGCCCTGGGCCCTTATGACATTGACCCGGAGGATGCCTGG
GTCGTTATGGACGGCGCCTTCGACCTCAAGTACTACCACAATCCGCGATC
GGGCGATATCGCCTGGCGTCCGCCGGGCGCCACACTGCCCTGCCAGGACA
GCGCGGTCGGTGGTGGTGGCGGTGGTGGTGGCGGC
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