mRNA_P-wetherbeei_contig812.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig812.1.1
Unique NamemRNA_P-wetherbeei_contig812.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig812.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig812contigP-wetherbeei_contig812:792..2591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1800
Hectar predicted targeting categoryother localisation
Exons1
Cds size1179
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187021.7008288-UTR-P-wetherbeei_contig812:791..10231683187021.7008288-UTR-P-wetherbeei_contig812:791..1023Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig812 792..1023 -
1683187021.724408-UTR-P-wetherbeei_contig812:2202..25911683187021.724408-UTR-P-wetherbeei_contig812:2202..2591Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig812 2203..2591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187021.7125306-CDS-P-wetherbeei_contig812:1023..22021683187021.7125306-CDS-P-wetherbeei_contig812:1023..2202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig812 1024..2202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig812.1.1prot_P-wetherbeei_contig812.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig812 1024..2202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig812.1.1

>prot_P-wetherbeei_contig812.1.1 ID=prot_P-wetherbeei_contig812.1.1|Name=mRNA_P-wetherbeei_contig812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=393bp
MVAEARKKAAAAFDAEATALAAQMAASDRAMEEVEMFVISASEEAQAKGT
EWATSAAARLDGLAKAARTKVGAVVGAAAGLASGAGTEAIAAADEAAVNA
TAAAAAGPAAIEPTLAQATTAMTALFAACESGRAAAAVSTRRAEADAAAR
LSDRVRLAENAGTAFTTALGALRASASHLAVAHGRGVVAYETLVGGYIAK
ASKVASPSGGTPVRRRYPRAAAFAQTRPHADIAEEAEAALPAMSVELEPP
VVGELVVMAPEPEATAMQETVAAREDPSGTSGASSDTEEGAAGHARKAAS
SVCGSTADSEAATEVGLMSTEPNQDDAAVENAAAPARRGLGAMVSKGKAE
SSIPRARATQRLRSGPRSKRSGDSNETAVEVSPLHESTNVES*
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mRNA from alignment at P-wetherbeei_contig812:792..2591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig812.1.1 ID=mRNA_P-wetherbeei_contig812.1.1|Name=mRNA_P-wetherbeei_contig812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1800bp|location=Sequence derived from alignment at P-wetherbeei_contig812:792..2591- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGCAGACGCTTCGGCGGCGCTGTCGCGGGCATCGGAGGCGGCGGCA
CTGGCGGCCGTCAAGCAGCAGGAGGTAGTCGAGGCCGGGCGACGGCGAAT
CGCGGCTGCATTGCAGCGCATTACAGAAGGTCTTGCGGAGCAGCAGTACG
CCGCGGAGCGGGCTACGGATGCGCTGGTATTGGCTGCTGAAGCGGCGGCG
GCGGACGTGGAGGGCTTCGTGGCTGGGCAGCGCGAGCTGCTGGCGGCGGC
CGCGGCGGCGGCGGCTTCGCAGCTGGAGGCCGAGCGCACCGAAGCGCGGC
GCCGTCAGACCGCGGCGTCGGAGCTGGCGAAGAAGCACAAGGAGGAAGCC
GCGGCGGATGCGGACAAGCTTCTGCGGACGGTGACGGCAATGGTGGCCGA
GGCGCGCAAGAAGGCGGCCGCAGCATTCGACGCCGAAGCCACCGCTCTCG
CGGCTCAGATGGCGGCCTCCGACCGGGCGATGGAGGAAGTGGAGATGTTT
GTGATCTCCGCTTCTGAGGAAGCTCAGGCCAAGGGCACCGAGTGGGCTAC
GTCGGCGGCAGCGCGGCTCGACGGGCTGGCCAAGGCCGCCCGCACCAAAG
TCGGCGCCGTGGTCGGTGCAGCGGCCGGTCTGGCGTCGGGCGCCGGGACT
GAGGCCATCGCCGCGGCTGACGAGGCCGCGGTGAATGCGACGGCAGCGGC
TGCGGCTGGGCCGGCGGCCATCGAGCCGACATTGGCGCAGGCTACCACCG
CCATGACTGCACTGTTCGCGGCGTGCGAGAGCGGACGTGCCGCAGCCGCC
GTGTCGACACGCCGGGCCGAGGCCGATGCGGCAGCGCGACTTTCCGACCG
CGTGAGGCTGGCGGAAAATGCCGGCACGGCGTTCACAACGGCGCTTGGCG
CCCTCCGCGCTTCGGCGTCCCACCTGGCAGTGGCTCACGGTCGCGGCGTG
GTGGCCTACGAGACGCTCGTCGGGGGCTACATCGCTAAGGCCTCCAAGGT
CGCGTCGCCGAGCGGCGGCACGCCGGTCCGACGCCGCTACCCGCGTGCCG
CCGCCTTCGCCCAGACGCGGCCGCACGCGGACATTGCGGAGGAGGCTGAA
GCAGCTTTGCCGGCCATGTCGGTGGAGCTAGAGCCGCCGGTGGTGGGAGA
GTTGGTTGTGATGGCGCCGGAGCCAGAGGCCACCGCCATGCAGGAGACGG
TCGCGGCCCGCGAAGATCCGTCTGGTACGAGCGGAGCAAGCTCGGACACG
GAAGAGGGCGCCGCTGGACACGCGCGGAAAGCCGCATCGTCGGTCTGCGG
CAGCACTGCGGACTCGGAGGCCGCGACAGAGGTAGGACTCATGTCGACGG
AGCCCAACCAGGACGACGCCGCCGTCGAGAATGCTGCCGCTCCCGCCCGG
CGCGGCCTGGGCGCGATGGTGAGCAAGGGCAAAGCCGAGTCCAGCATCCC
TCGGGCCCGTGCCACCCAGCGGCTCCGTTCCGGCCCGCGATCGAAGCGGA
GCGGGGACAGCAACGAGACGGCGGTGGAGGTATCCCCGCTACATGAGTCG
ACCAACGTGGAGAGTTAAGATCGCCGGAGTTGGCGCAAAGGAGAGAAGTG
TGCTTATCGGGATGGAGATGGCAGAAAATACAACGGCGATTGTGCGGGTA
CAAATTACCCCCTTTGGTCCGTTTGGTAGGCACCAGAAGATAGCTCTGGG
CCTCAGTTTTGGCACACGTGAATCAGAAGAGACCCCAGAACAACGTATGG
CAGATGTTCCGGCACGTATCGCAGACAGTTCCATCATAAGTAAGTTTAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig812:792..2591-

>mRNA_P-wetherbeei_contig812.1.1 ID=mRNA_P-wetherbeei_contig812.1.1|Name=mRNA_P-wetherbeei_contig812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig812:792..2591- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCGAGGCGCGCAAGAAGGCGGCCGCAGCATTCGACGCCGAAGC
CACCGCTCTCGCGGCTCAGATGGCGGCCTCCGACCGGGCGATGGAGGAAG
TGGAGATGTTTGTGATCTCCGCTTCTGAGGAAGCTCAGGCCAAGGGCACC
GAGTGGGCTACGTCGGCGGCAGCGCGGCTCGACGGGCTGGCCAAGGCCGC
CCGCACCAAAGTCGGCGCCGTGGTCGGTGCAGCGGCCGGTCTGGCGTCGG
GCGCCGGGACTGAGGCCATCGCCGCGGCTGACGAGGCCGCGGTGAATGCG
ACGGCAGCGGCTGCGGCTGGGCCGGCGGCCATCGAGCCGACATTGGCGCA
GGCTACCACCGCCATGACTGCACTGTTCGCGGCGTGCGAGAGCGGACGTG
CCGCAGCCGCCGTGTCGACACGCCGGGCCGAGGCCGATGCGGCAGCGCGA
CTTTCCGACCGCGTGAGGCTGGCGGAAAATGCCGGCACGGCGTTCACAAC
GGCGCTTGGCGCCCTCCGCGCTTCGGCGTCCCACCTGGCAGTGGCTCACG
GTCGCGGCGTGGTGGCCTACGAGACGCTCGTCGGGGGCTACATCGCTAAG
GCCTCCAAGGTCGCGTCGCCGAGCGGCGGCACGCCGGTCCGACGCCGCTA
CCCGCGTGCCGCCGCCTTCGCCCAGACGCGGCCGCACGCGGACATTGCGG
AGGAGGCTGAAGCAGCTTTGCCGGCCATGTCGGTGGAGCTAGAGCCGCCG
GTGGTGGGAGAGTTGGTTGTGATGGCGCCGGAGCCAGAGGCCACCGCCAT
GCAGGAGACGGTCGCGGCCCGCGAAGATCCGTCTGGTACGAGCGGAGCAA
GCTCGGACACGGAAGAGGGCGCCGCTGGACACGCGCGGAAAGCCGCATCG
TCGGTCTGCGGCAGCACTGCGGACTCGGAGGCCGCGACAGAGGTAGGACT
CATGTCGACGGAGCCCAACCAGGACGACGCCGCCGTCGAGAATGCTGCCG
CTCCCGCCCGGCGCGGCCTGGGCGCGATGGTGAGCAAGGGCAAAGCCGAG
TCCAGCATCCCTCGGGCCCGTGCCACCCAGCGGCTCCGTTCCGGCCCGCG
ATCGAAGCGGAGCGGGGACAGCAACGAGACGGCGGTGGAGGTATCCCCGC
TACATGAGTCGACCAACGTGGAGAGTTAA
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