mRNA_P-wetherbeei_contig8100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8100.1.1
Unique NamemRNA_P-wetherbeei_contig8100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8100contigP-wetherbeei_contig8100:602..2225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1155
Hectar predicted targeting categorymitochondrion
Exons3
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187020.5128026-CDS-P-wetherbeei_contig8100:601..8731683187020.5128026-CDS-P-wetherbeei_contig8100:601..873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8100 602..873 -
1683187020.5213225-CDS-P-wetherbeei_contig8100:1021..13341683187020.5213225-CDS-P-wetherbeei_contig8100:1021..1334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8100 1022..1334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187020.5366077-UTR-P-wetherbeei_contig8100:1334..17711683187020.5366077-UTR-P-wetherbeei_contig8100:1334..1771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8100 1335..1771 -
1683187020.5471156-UTR-P-wetherbeei_contig8100:2092..22251683187020.5471156-UTR-P-wetherbeei_contig8100:2092..2225Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8100 2093..2225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8100.1.1prot_P-wetherbeei_contig8100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8100 602..1334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8100.1.1

>prot_P-wetherbeei_contig8100.1.1 ID=prot_P-wetherbeei_contig8100.1.1|Name=mRNA_P-wetherbeei_contig8100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MGPCVSRILGQFCRRFHNPQPLPMQSPFRVRNKPILRILRACSVVCHTPR
FLRASAACASRILARLLLAQRLLPGQRRLEFFSALVLLRVGAHLAWPGAA
SPGAAPHRVLRVRKESDALSQKTKKHGERPQERTTGGRKPNGEVCGAVLA
KIMHAGCTPFVTATTLCGDGYHRRAARCGPKQNATTPRCAVPSC*
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mRNA from alignment at P-wetherbeei_contig8100:602..2225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8100.1.1 ID=mRNA_P-wetherbeei_contig8100.1.1|Name=mRNA_P-wetherbeei_contig8100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1624bp|location=Sequence derived from alignment at P-wetherbeei_contig8100:602..2225- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGCGGAGCGTCGTCGGCGCTCGGGGCCCTGGGGGCAGTGATTGGC
GGGGCATTGGGCGGCGGCGGCAGCGGCGGGCGACGGCTGCGGGTTTCGCA
GCAGGTAATGGACGATGCACTGGAATTGTGCAGGTAAGAGGGAGCTTGCT
GTGAGCTGTTTTCAGTTGGGCATACCAAAACGTTCTCACCTTCAACTCCG
ATCGCTCAACCTATTAGTAAGAGCTACTTTCGTTGTCATCCTTACTTTTT
GCTTGCTGCGTGTGGCGGCTGCGTGGCCAGTGCATGCTGCATTTTTTGGT
CGCTGCAGCGGTTGGAGATGCAGAGGCTCGGCGAGGAGGCGGACCATCGC
ACGCTGCTTGGCCCGGTTACCGACATTTTCCATCATTTCCTGTGTTTGGT
GTGGTTCGTTGTCTGTCTTATTTCCCGGAACTTTCCATTTCGACCTGCAC
GCAGGTTTGCCATCTCGGCGCTGGAGCACCGGGAGCCTGACCTGGCCGCT
CAGAGGCTCGAGCAGGCACTGCGGGTGCTGCGGCCGTGATGACGCGGTGC
AGAAGACACGCCGCCGCCGCCGCCGCCTCCGCTGCCACCGCCATGTGCAC
TTGCCGCTGATGCAACTCCCTCCGCGCTCTTTTTTTGGAGCGGACCGAGA
AGCGTTGGCGACCGGTGGAGGTTGCTGCTTTCGGACGAGCAGCTTCTCTT
CCAGAGAAGCCATCCATTGCCGTTATGCTCCTTTGGGCTGTTGGCTGGCC
TTTGATGGCTGCGCTTTGGTGGGTGGCTGACAGCCGCGTGGCTCTGTTTA
ATGGGCGGGTGCGGCGACGCCTCTCTCTACGTGTTTATTGGAGATGTAGC
TAAGAGAAAGAATCGTTCTTGGGCCTTGGCCAAGGGATGTTATGGGACCA
TGTGTGTCCCGCATATTGGGTCAGTTTTGCCGTAGATTCCATAACCCACA
GCCATTGCCGATGCAATCACCATTTCGGGTACGAAATAAGCCCATACTTC
GTATTCTCCGGGCCTGCTCCGTTGTCTGCCACACGCCACGCTTTTTGCGA
GCCTCCGCTGCTTGCGCTTCTCGCATTCTTGCGCGTCTTCTCCTCGCACA
GCGCCTGCTTCCCGGTCAGCGCCGCCTCGAGTTTTTCTCCGCGCTCGTCC
TCCTCCGCGTCGGCGCTCATCTTGCTTGGCCAGGCGCTGCATCTCCAGGT
GCCGGTGAGCGCGGTACATGTGGAACTCGTCGCTTCCGGTGCTCGCAGCG
CTCCTGGCCTTGTCCACCTTGATGCGCTCCTCACCCCTGGCCTGCTCGTA
CATGATTTGCACCTTGCGCGGGTTGTCGCTGTACGATTACACCGCCGTGT
AGCGCCCCATAGAGTCTTGCGAGTGAGAAAGGAGAGCGATGCTCTTTCTC
AAAAAACGAAGAAACACGGTGAGAGACCGCAAGAGAGAACAACCGGAGGG
CGGAAGCCAAACGGAGAGGTGTGCGGCGCTGTCCTGGCAAAAATCATGCA
TGCGGGATGCACGCCTTTCGTAACAGCCACGACGTTGTGTGGAGATGGAT
ACCATCGAAGGGCAGCGCGTTGCGGTCCTAAGCAAAATGCCACGACACCA
CGATGTGCGGTGCCATCGTGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8100:602..2225-

>mRNA_P-wetherbeei_contig8100.1.1 ID=mRNA_P-wetherbeei_contig8100.1.1|Name=mRNA_P-wetherbeei_contig8100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig8100:602..2225- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACCATGTGTGTCCCGCATATTGGGTCAGTTTTGCCGTAGATTCCA
TAACCCACAGCCATTGCCGATGCAATCACCATTTCGGGTACGAAATAAGC
CCATACTTCGTATTCTCCGGGCCTGCTCCGTTGTCTGCCACACGCCACGC
TTTTTGCGAGCCTCCGCTGCTTGCGCTTCTCGCATTCTTGCGCGTCTTCT
CCTCGCACAGCGCCTGCTTCCCGGTCAGCGCCGCCTCGAGTTTTTCTCCG
CGCTCGTCCTCCTCCGCGTCGGCGCTCATCTTGCTTGGCCAGGCGCTGCA
TCTCCAGGTGCCGCGCCCCATAGAGTCTTGCGAGTGAGAAAGGAGAGCGA
TGCTCTTTCTCAAAAAACGAAGAAACACGGTGAGAGACCGCAAGAGAGAA
CAACCGGAGGGCGGAAGCCAAACGGAGAGGTGTGCGGCGCTGTCCTGGCA
AAAATCATGCATGCGGGATGCACGCCTTTCGTAACAGCCACGACGTTGTG
TGGAGATGGATACCATCGAAGGGCAGCGCGTTGCGGTCCTAAGCAAAATG
CCACGACACCACGATGTGCGGTGCCATCGTGCTAG
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