mRNA_P-wetherbeei_contig81.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig81.1.1
Unique NamemRNA_P-wetherbeei_contig81.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig81.1.1 vs. uniprot
Match: A0A3C0TS64_9PROT (PEP-CTERM domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS64_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 3.580e-21
Identity = 77/203 (37.93%), Postives = 105/203 (51.72%), Query Frame = 1 
Query:    7 PRTMRLTRWNDNGLAICSDQRSDGCTGSDEHTVDGKGIGSGSSAHDINESIKFAFSTGMEFAVRYVTFGYSDS----NDDAVMSFMTELGATVNLNINLDYHNANASYDYSSCSNLTSSNLGLLRYDAAYDAAGGYNLGHDPIYNFLASSSGFEFKALDSNDNWKIRQISWIVED---VPTPGTAALLLGGLGGLGWFARRRR 594
            P  M+LTR + NGL +CS  R+      D+ TVDG G          +ESIKF     +EFAV+ VTFG + +     DDA M F  + GA +N+  N+         D   C  LT +   +  YD    A GG     D I+++LAS+ GF F+AL  +DNW IR   W+  D   VP P + +LL  G+ GLG+  +RRR
Sbjct:   96 PLGMQLTRTS-NGLGLCS--RTPASCALDQDTVDGLGP---------DESIKFVIDPAIEFAVQTVTFGSARNAGPLRDDANMVF--QAGA-LNMTFNI--------VDAGGCDALTGAPCMVNIYDLVNTALGGGQT-DDEIFDYLASTDGFTFRALGDDDNWYIRGARWVTADPASVPEPASLSLLGAGVMGLGYIGKRRR 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig81.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C0TS64_9PROT3.580e-2137.93PEP-CTERM domain-containing protein n=1 Tax=Alphap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig81contigP-wetherbeei_contig81:747..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons2
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187020.0109913-CDS-P-wetherbeei_contig81:746..10951683187020.0109913-CDS-P-wetherbeei_contig81:746..1095Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig81 747..1095 +
1683187020.0217557-CDS-P-wetherbeei_contig81:1167..14301683187020.0217557-CDS-P-wetherbeei_contig81:1167..1430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig81 1168..1430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig81.1.1prot_P-wetherbeei_contig81.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig81 747..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig81.1.1

>prot_P-wetherbeei_contig81.1.1 ID=prot_P-wetherbeei_contig81.1.1|Name=mRNA_P-wetherbeei_contig81.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
MQPRTMRLTRWNDNGLAICSDQRSDGCTGSDEHTVDGKGIGSGSSAHDIN
ESIKFAFSTGMEFAVRYVTFGYSDSNDDAVMSFMTELGATVNLNINLDYH
NANASYDYSSCSNLTSSNLGLLRYDAAYDAAGGYNLGHDPIYNFLASSSG
FEFKALDSNDNWKIRQISWIVEDVPTPGTAALLLGGLGGLGWFARRRRAS
VIA*
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mRNA from alignment at P-wetherbeei_contig81:747..1430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig81.1.1 ID=mRNA_P-wetherbeei_contig81.1.1|Name=mRNA_P-wetherbeei_contig81.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig81:747..1430+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCCCGCACGATGCGCTTGACCAGATGGAATGATAACGGCCTTGC
CATATGCTCGGATCAGCGAAGCGACGGGTGCACCGGTTCTGACGAGCACA
CCGTGGATGGAAAAGGCATAGGTAGCGGCAGTAGCGCCCACGACATTAAC
GAATCCATCAAGTTTGCGTTTTCCACCGGAATGGAATTCGCGGTGCGGTA
TGTTACGTTCGGTTACTCTGACAGTAATGATGATGCGGTGATGAGTTTTA
TGACCGAATTGGGCGCCACGGTGAACCTTAACATCAATCTTGACTACCAC
AACGCCAATGCCAGTTACGATTACAGTTCCTGTTCAAATCTGACATCCAG
TTCAAGTGAATACACGGCAGTCTGCACCATTGACATCTATAAACTGGTGG
CATTGTCGGATGACACTCCAGGCAACTTGGGTCTTCTCCGTTACGATGCG
GCCTACGATGCGGCCGGGGGTTATAATCTGGGTCATGACCCCATCTACAA
TTTCCTGGCGTCGTCCTCGGGCTTTGAATTCAAGGCGCTGGACAGTAACG
ATAACTGGAAGATCCGCCAGATATCCTGGATTGTGGAAGATGTCCCAACC
CCCGGCACGGCGGCGCTGCTGCTGGGTGGCCTGGGCGGACTGGGCTGGTT
TGCACGGCGGCGCCGGGCAAGCGTGATCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig81:747..1430+

>mRNA_P-wetherbeei_contig81.1.1 ID=mRNA_P-wetherbeei_contig81.1.1|Name=mRNA_P-wetherbeei_contig81.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig81:747..1430+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCCCGCACGATGCGCTTGACCAGATGGAATGATAACGGCCTTGC
CATATGCTCGGATCAGCGAAGCGACGGGTGCACCGGTTCTGACGAGCACA
CCGTGGATGGAAAAGGCATAGGTAGCGGCAGTAGCGCCCACGACATTAAC
GAATCCATCAAGTTTGCGTTTTCCACCGGAATGGAATTCGCGGTGCGGTA
TGTTACGTTCGGTTACTCTGACAGTAATGATGATGCGGTGATGAGTTTTA
TGACCGAATTGGGCGCCACGGTGAACCTTAACATCAATCTTGACTACCAC
AACGCCAATGCCAGTTACGATTACAGTTCCTGTTCAAATCTGACATCCAG
CAACTTGGGTCTTCTCCGTTACGATGCGGCCTACGATGCGGCCGGGGGTT
ATAATCTGGGTCATGACCCCATCTACAATTTCCTGGCGTCGTCCTCGGGC
TTTGAATTCAAGGCGCTGGACAGTAACGATAACTGGAAGATCCGCCAGAT
ATCCTGGATTGTGGAAGATGTCCCAACCCCCGGCACGGCGGCGCTGCTGC
TGGGTGGCCTGGGCGGACTGGGCTGGTTTGCACGGCGGCGCCGGGCAAGC
GTGATCGCCTGA
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