mRNA_P-wetherbeei_contig809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig809.1.1
Unique NamemRNA_P-wetherbeei_contig809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig809.1.1 vs. uniprot
Match: D8LS82_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS82_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.570e-12
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:  317 KFESFKPQCPYLFIYGTAGLKRLITFHQPKWADRVNARTDAAAVALPKAGHWMMLDSPDEVNELLLAFAAD 529
            K     PQCP +F++GTAG+K+++TFH  +WA++V  +  +++  +P+A HW+  D P+EVN  L  F AD
Sbjct:  200 KVRPMMPQCPLMFLHGTAGVKKIMTFHAARWAEKVQEKEGSSSQGIPQASHWVTRDQPEEVNRRLDEFLAD 270
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BLAST of mRNA_P-wetherbeei_contig809.1.1 vs. uniprot
Match: D8LK39_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK39_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.200e-7
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  329 FKPQCPYLFIYGTAGLKRLITFHQPKWADRVNARTDAAAVALPKAGHWMMLD-SPDEVNELLLAFAAD 529
            F P+CP LF+YG+AG+K+L+ FH   W D+++ R  ++ V + +A HW+M     D VN  L  F A+
Sbjct:  202 FMPRCPVLFMYGSAGMKKLMRFHADWWVDKISKRKGSSVVEVTEASHWLMRGRGGDVVNARLDTFFAE 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS82_ECTSI2.570e-1242.25AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
D8LK39_ECTSI2.200e-741.18Short chain dehydrogenase n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig809contigP-wetherbeei_contig809:1220..2790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS82
Preferred nameEPHX4
PFAMsAbhydrolase_1,Abhydrolase_6
Model size1095
Max annot lvl2759|Eukaryota
KEGG rclassRC01447,RC01728,RC01764,RC02528
KEGG koko:K01253,ko:K22368,ko:K22369
KEGG ReactionR07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443
KEGG Pathwayko00980,ko04976,ko05204,map00980,map04976,map05204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004301,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016801,GO:0016803,GO:0018904,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0097176,GO:1901360
Exons3
Evalue2.53e-15
EggNOG OGsCOG0596@1|root,KOG4178@2759|Eukaryota
EC3.3.2.10,3.3.2.9
Description10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity
Cds size387
COG categoryL
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.3721266-UTR-P-wetherbeei_contig809:1219..13071683187019.3721266-UTR-P-wetherbeei_contig809:1219..1307Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig809 1220..1307 +
1683187019.404149-UTR-P-wetherbeei_contig809:2170..27901683187019.404149-UTR-P-wetherbeei_contig809:2170..2790Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig809 2171..2790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.383852-CDS-P-wetherbeei_contig809:1514..15921683187019.383852-CDS-P-wetherbeei_contig809:1514..1592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig809 1515..1592 +
1683187019.393885-CDS-P-wetherbeei_contig809:1861..21701683187019.393885-CDS-P-wetherbeei_contig809:1861..2170Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig809 1862..2170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig809.1.1prot_P-wetherbeei_contig809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig809 1515..2170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig809.1.1

>prot_P-wetherbeei_contig809.1.1 ID=prot_P-wetherbeei_contig809.1.1|Name=mRNA_P-wetherbeei_contig809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MVVQKRTKFESFKPQCPYLFIYGTAGLKRLITFHQPKWADRVNARTDAAA
VALPKAGHWMMLDSPDEVNELLLAFAADDYTAVKGGAAAAPTGASTVAAA
AGSPMTPVAPALAKSKASAKAKAPAAKT*
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mRNA from alignment at P-wetherbeei_contig809:1220..2790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig809.1.1 ID=mRNA_P-wetherbeei_contig809.1.1|Name=mRNA_P-wetherbeei_contig809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1571bp|location=Sequence derived from alignment at P-wetherbeei_contig809:1220..2790+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGGCGGTGGTGTGAGGTGCGGTGCGGTGGCAATCCATGGCGCTACCT
CCTGCTGCGGGACTGCCGTCACGGTCGCCGAAAACGAAGTTTGTTCCGTT
TCTGTGACCTATGACATTTGCATGCCGCTATTTCGCTTGAGTAATCGACT
CGAGACAGTTGTCGTGTTAGTTTTCTGTTTGCCACGCTTGTCTTTGATTC
CTGCTGAATAACTCCCTGACCCAACCCTCGATTGCTTCCGTGGTTAATCA
CGTTGTTCCTTGCGACTTTATCTCCGCAATGCAATCGTTACGCAGATGGT
CGTACAGAAACGGACGAAATTCGAATCGTTTAAACCGCAGTGCCCGTATC
TATTCATCTACGGAACGGCTGGAGTAAGTTTCAGCCTTTTCGAATTAAAT
GTGCATCTTTATGGAGGATAAGATCTTTTGCCCCAGGAGGCGTGCCGCGA
GAAGAACAGGGTGGAATTGCGGAAAAATCCGAGGTACAAAGAAAAGCGGC
GCGGCGGCTCAGTTTGTGCATGAAGCGCGTCCCCCAAAGGTCTTGTCTCT
TCGAAGCCCCGACGCTTCCTCTCCCTGCCCGCCCGTCTTTCCTTCTTGTT
CGTATCTGTGGCCCTTTCCCGCCTGCCCTTGCCCCTTCTCAGCTCAAGCG
GCTCATCACCTTCCACCAGCCGAAGTGGGCCGACCGCGTCAACGCGCGCA
CTGATGCTGCGGCCGTGGCGCTGCCGAAGGCGGGTCACTGGATGATGCTC
GACAGCCCCGACGAGGTCAATGAGCTGCTTTTGGCGTTCGCGGCGGATGA
CTACACAGCCGTCAAGGGCGGTGCCGCCGCGGCACCGACGGGAGCGTCCA
CGGTGGCGGCGGCTGCGGGGTCTCCAATGACGCCTGTGGCGCCGGCGCTG
GCGAAGTCGAAGGCATCGGCGAAGGCGAAGGCACCGGCAGCGAAGACGTG
AGCCGCAGCAACGTCTGAAAGTCAGACTTGCAGCTGCGGGGAGGAAGTGG
ACGGGTAACGGTTGTGCTTGGAATCCGTTGTGTCGTGTGGTTTTTGCCGA
TTTCAGGCTTGGAGATGGATGGGCTTCTCTCTACCCGTGGTGAGGAGGAT
AAATGCGGCGCAGTTGTGAGGCGGCGCATCTGAAGGTGACCTGTTAGCCC
CGAGTAGTTCTCGAGGGTGGTCGTCAGATACCACCTATCTCCACCAAGGC
CCTCTTTATGAGGATGGATCGGCAACGGAATCTCGAGGGCCTTGACCAAC
TTCTCGTCTCTTTCATCCCATTGCCAAAGCGTGCTTTTCTCTCCGTTTAG
TCCGTCGGCGACGATTCGAATGTGGTGTCCTGAATCACCGTGACTGGTAC
TGAAACGGTGAGCTCACCGAGAAGTAGAAACAAGTAACCTCTGCAGTAAG
ACTCATGGTGTTGCGTCAAAAGTCCAAAGTCTGCTCCTGCTGAAAAAGTA
TCCAAGGTGTGGATCCATAAAGGAACTGTCCAGATTTCTGGTTCCAAGAT
GGCTCCGTGTTATGTCCACGATCCATACCTCGGCGTGACCACAGATACTT
ATTTATTAAAATCGATCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig809:1220..2790+

>mRNA_P-wetherbeei_contig809.1.1 ID=mRNA_P-wetherbeei_contig809.1.1|Name=mRNA_P-wetherbeei_contig809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig809:1220..2790+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGTACAGAAACGGACGAAATTCGAATCGTTTAAACCGCAGTGCCC
GTATCTATTCATCTACGGAACGGCTGGACTCAAGCGGCTCATCACCTTCC
ACCAGCCGAAGTGGGCCGACCGCGTCAACGCGCGCACTGATGCTGCGGCC
GTGGCGCTGCCGAAGGCGGGTCACTGGATGATGCTCGACAGCCCCGACGA
GGTCAATGAGCTGCTTTTGGCGTTCGCGGCGGATGACTACACAGCCGTCA
AGGGCGGTGCCGCCGCGGCACCGACGGGAGCGTCCACGGTGGCGGCGGCT
GCGGGGTCTCCAATGACGCCTGTGGCGCCGGCGCTGGCGAAGTCGAAGGC
ATCGGCGAAGGCGAAGGCACCGGCAGCGAAGACGTGA
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