mRNA_P-wetherbeei_contig8085.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8085.1.1
Unique NamemRNA_P-wetherbeei_contig8085.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8085contigP-wetherbeei_contig8085:937..2900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1964
Hectar predicted targeting categoryother localisation
Exons1
Cds size1827
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.1232424-CDS-P-wetherbeei_contig8085:936..27631683187019.1232424-CDS-P-wetherbeei_contig8085:936..2763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8085 937..2763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.1327019-UTR-P-wetherbeei_contig8085:2763..29001683187019.1327019-UTR-P-wetherbeei_contig8085:2763..2900Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8085 2764..2900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8085.1.1prot_P-wetherbeei_contig8085.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8085 937..2763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8085.1.1

>prot_P-wetherbeei_contig8085.1.1 ID=prot_P-wetherbeei_contig8085.1.1|Name=mRNA_P-wetherbeei_contig8085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=609bp
MGTKRPPVAGPASSFPRKRPSNHLVTATLSDGGNVTEAAALSRKVSAAGN
GDTGDGVTTAPEGGSAAEGAKPSRSRRLFQVGEIVKVKYKSASTRWQRAR
VVKIGDNNRWYNVTELDGADTAEYKVIERNIRKAGPPASTPVAAPASSRG
GSGSGSGSGGSGGSDGIAGTVEENAVPPQPEPAQRGPAAAEAAEAGPLDK
SASARALADSAHAGEAAANRSAIGLGPPQIAAVAAGNHGVSTSTSRTAPA
AAAVATPAAGAAAAPTSGMAPAGADLGGMERAAGAASDAVGTTDRGDKTA
AACGNVPAPDRQPADGEAPVATAAGVAAIMVGAPASSLAPAPLPKDLPVP
GGGAAAEAGATEAAAFGATGTGKASPTAAPEASGPEDTLLAAAAPAAGPV
SSREAVQSDGGGGGGVGGTGGGGSSRGSRRTTGSGTSGAVSGRAGAGGGA
GSSSGGGRGGSDGGDSGKASEETCRICRTMADAAPERSVGCVNCGGVYHM
TCVELNAQPAWLFYCKACPIPTRVHYTRGKSGSGPRIHSCPHVDTPERSR
GMCNRCSRTFHALMKDPCRSFKMRGYGNLKTDGAQDGGAGGRGGDGGGGG
GERSGRKGG
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mRNA from alignment at P-wetherbeei_contig8085:937..2900-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8085.1.1 ID=mRNA_P-wetherbeei_contig8085.1.1|Name=mRNA_P-wetherbeei_contig8085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1964bp|location=Sequence derived from alignment at P-wetherbeei_contig8085:937..2900- (Phaeothamnion wetherbeei SAG_119_79)
GCGCGGGAAAAATTATCCTTCTCTCCGACAGAGACATCGCGCGGTATTTG
GTTCACCACCTTCCAACTGGCAGCTTGTACCGCCGGATTTAAACCTCTTC
GCTTCTCGGCCCTTGGCGGCATCGCCAGAAAACAAAGATGGGCACAAAAC
GCCCTCCCGTTGCAGGGCCAGCGTCCTCCTTTCCACGAAAAAGGCCCAGC
AATCATCTAGTAACGGCCACGTTGAGCGACGGTGGCAACGTCACGGAGGC
GGCAGCACTGTCGCGCAAGGTGTCGGCTGCAGGAAATGGCGACACAGGCG
ATGGCGTTACTACCGCGCCGGAAGGAGGCAGTGCTGCCGAAGGCGCAAAG
CCATCACGATCACGACGTCTCTTTCAGGTGGGGGAGATCGTCAAAGTCAA
ATATAAAAGTGCCTCAACGAGGTGGCAAAGGGCGCGCGTCGTGAAGATTG
GAGACAACAACAGATGGTACAACGTCACGGAATTGGACGGCGCGGACACG
GCAGAGTACAAGGTCATCGAGAGGAACATCAGGAAGGCAGGACCACCCGC
GTCGACTCCGGTGGCGGCACCGGCGTCGTCGCGCGGCGGCAGCGGCAGCG
GCAGTGGCAGCGGCGGCAGCGGCGGCAGCGACGGCATTGCCGGGACAGTG
GAAGAGAATGCGGTGCCGCCGCAGCCGGAGCCAGCGCAGCGGGGCCCCGC
CGCTGCTGAAGCGGCAGAAGCGGGACCGCTGGACAAGTCGGCTTCGGCAC
GTGCCCTGGCGGATTCGGCGCATGCTGGGGAAGCTGCAGCCAATAGAAGC
GCCATTGGGCTGGGCCCGCCGCAAATTGCTGCTGTCGCGGCGGGGAACCA
CGGCGTGTCGACATCCACTTCTCGAACCGCACCTGCCGCAGCTGCCGTGG
CGACACCGGCAGCAGGGGCTGCGGCGGCGCCGACGTCGGGGATGGCGCCC
GCAGGAGCGGATCTCGGCGGCATGGAGAGAGCTGCAGGAGCTGCGAGCGA
CGCCGTCGGAACAACCGACAGAGGCGACAAAACTGCTGCAGCCTGCGGCA
ACGTTCCTGCCCCCGATCGGCAGCCTGCGGATGGCGAGGCACCAGTGGCA
ACTGCGGCGGGGGTGGCGGCAATAATGGTGGGAGCGCCAGCGTCGTCGCT
GGCGCCAGCGCCGCTGCCGAAAGACTTGCCAGTCCCGGGAGGCGGTGCGG
CGGCGGAGGCGGGAGCGACCGAGGCGGCCGCGTTCGGCGCGACTGGGACC
GGCAAGGCTTCGCCCACGGCAGCCCCGGAGGCATCAGGCCCCGAGGACAC
CTTGCTTGCGGCGGCGGCACCTGCGGCGGGCCCGGTTTCATCGCGTGAGG
CGGTGCAAAGCGACGGCGGCGGCGGCGGGGGTGTTGGTGGCACTGGCGGC
GGCGGCAGCAGTCGCGGGAGCCGCCGCACGACCGGCAGTGGCACCAGTGG
CGCTGTCAGTGGTCGCGCGGGAGCTGGCGGCGGCGCCGGCAGCAGCAGCG
GTGGCGGCAGGGGAGGCAGCGACGGCGGAGACAGCGGCAAGGCCAGCGAG
GAGACGTGCCGGATATGCCGAACGATGGCCGATGCGGCGCCGGAGCGCAG
TGTTGGATGCGTCAACTGTGGGGGCGTGTACCACATGACCTGCGTCGAGC
TGAACGCGCAGCCCGCCTGGCTTTTCTACTGCAAGGCGTGTCCAATCCCC
ACGCGTGTCCACTACACCCGCGGCAAGTCTGGCTCGGGGCCGCGGATACA
TTCGTGCCCCCACGTGGACACCCCGGAGCGCTCCCGGGGCATGTGCAACC
GGTGCTCCCGCACCTTCCACGCGCTCATGAAGGATCCGTGCCGGAGCTTC
AAGATGCGAGGTTACGGCAACTTGAAAACCGACGGGGCCCAGGACGGCGG
GGCCGGCGGGCGCGGTGGTGACGGCGGCGGCGGCGGCGGCGAGCGCAGTG
GTAGGAAAGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8085:937..2900-

>mRNA_P-wetherbeei_contig8085.1.1 ID=mRNA_P-wetherbeei_contig8085.1.1|Name=mRNA_P-wetherbeei_contig8085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1827bp|location=Sequence derived from alignment at P-wetherbeei_contig8085:937..2900- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACAAAACGCCCTCCCGTTGCAGGGCCAGCGTCCTCCTTTCCACG
AAAAAGGCCCAGCAATCATCTAGTAACGGCCACGTTGAGCGACGGTGGCA
ACGTCACGGAGGCGGCAGCACTGTCGCGCAAGGTGTCGGCTGCAGGAAAT
GGCGACACAGGCGATGGCGTTACTACCGCGCCGGAAGGAGGCAGTGCTGC
CGAAGGCGCAAAGCCATCACGATCACGACGTCTCTTTCAGGTGGGGGAGA
TCGTCAAAGTCAAATATAAAAGTGCCTCAACGAGGTGGCAAAGGGCGCGC
GTCGTGAAGATTGGAGACAACAACAGATGGTACAACGTCACGGAATTGGA
CGGCGCGGACACGGCAGAGTACAAGGTCATCGAGAGGAACATCAGGAAGG
CAGGACCACCCGCGTCGACTCCGGTGGCGGCACCGGCGTCGTCGCGCGGC
GGCAGCGGCAGCGGCAGTGGCAGCGGCGGCAGCGGCGGCAGCGACGGCAT
TGCCGGGACAGTGGAAGAGAATGCGGTGCCGCCGCAGCCGGAGCCAGCGC
AGCGGGGCCCCGCCGCTGCTGAAGCGGCAGAAGCGGGACCGCTGGACAAG
TCGGCTTCGGCACGTGCCCTGGCGGATTCGGCGCATGCTGGGGAAGCTGC
AGCCAATAGAAGCGCCATTGGGCTGGGCCCGCCGCAAATTGCTGCTGTCG
CGGCGGGGAACCACGGCGTGTCGACATCCACTTCTCGAACCGCACCTGCC
GCAGCTGCCGTGGCGACACCGGCAGCAGGGGCTGCGGCGGCGCCGACGTC
GGGGATGGCGCCCGCAGGAGCGGATCTCGGCGGCATGGAGAGAGCTGCAG
GAGCTGCGAGCGACGCCGTCGGAACAACCGACAGAGGCGACAAAACTGCT
GCAGCCTGCGGCAACGTTCCTGCCCCCGATCGGCAGCCTGCGGATGGCGA
GGCACCAGTGGCAACTGCGGCGGGGGTGGCGGCAATAATGGTGGGAGCGC
CAGCGTCGTCGCTGGCGCCAGCGCCGCTGCCGAAAGACTTGCCAGTCCCG
GGAGGCGGTGCGGCGGCGGAGGCGGGAGCGACCGAGGCGGCCGCGTTCGG
CGCGACTGGGACCGGCAAGGCTTCGCCCACGGCAGCCCCGGAGGCATCAG
GCCCCGAGGACACCTTGCTTGCGGCGGCGGCACCTGCGGCGGGCCCGGTT
TCATCGCGTGAGGCGGTGCAAAGCGACGGCGGCGGCGGCGGGGGTGTTGG
TGGCACTGGCGGCGGCGGCAGCAGTCGCGGGAGCCGCCGCACGACCGGCA
GTGGCACCAGTGGCGCTGTCAGTGGTCGCGCGGGAGCTGGCGGCGGCGCC
GGCAGCAGCAGCGGTGGCGGCAGGGGAGGCAGCGACGGCGGAGACAGCGG
CAAGGCCAGCGAGGAGACGTGCCGGATATGCCGAACGATGGCCGATGCGG
CGCCGGAGCGCAGTGTTGGATGCGTCAACTGTGGGGGCGTGTACCACATG
ACCTGCGTCGAGCTGAACGCGCAGCCCGCCTGGCTTTTCTACTGCAAGGC
GTGTCCAATCCCCACGCGTGTCCACTACACCCGCGGCAAGTCTGGCTCGG
GGCCGCGGATACATTCGTGCCCCCACGTGGACACCCCGGAGCGCTCCCGG
GGCATGTGCAACCGGTGCTCCCGCACCTTCCACGCGCTCATGAAGGATCC
GTGCCGGAGCTTCAAGATGCGAGGTTACGGCAACTTGAAAACCGACGGGG
CCCAGGACGGCGGGGCCGGCGGGCGCGGTGGTGACGGCGGCGGCGGCGGC
GGCGAGCGCAGTGGTAGGAAAGGCGGC
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