mRNA_P-wetherbeei_contig8075.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8075.1.1
Unique NamemRNA_P-wetherbeei_contig8075.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8075.1.1 vs. uniprot
Match: D7FJJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ1_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.140e-29
Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 1 
Query:    1 CGWVGLLNIDFVNYHTYYFEVSAAKGQ---EKPKAHQKHRLHLLTRQRCRFQNAWCYSFVIIVLAFMLLPRLGFFVCMLRVPKALWSRQQKWTAALLVSLFFFNNPFYAAMIWSSSPGFWYGVYGMAVATFLALLCVFWLDLFDDIGAGNQAST 453
            CGW  LL  +FV + TYY +V   + Q     P+      +  +T++   +Q  W Y +++I L FM +P++GFF  M+++ +  WSRQQ     LL+SL FFNN F+   I+S  P F++ +Y + VATFLAL+  FWL+LF D+ AGN   T
Sbjct:  153 CGWTTLLTEEFVEFGTYYMQVDMQEPQLFSNAPEFTLDFEIVYITKEFTTYQMYWHYGWIVITLVFMFVPKIGFFYEMMQLHQNFWSRQQARVGVLLLSLLFFNNVFFGFQIFSPFPRFFFSLYIVFVATFLALMLFFWLELFGDLAAGNMQGT 306
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BLAST of mRNA_P-wetherbeei_contig8075.1.1 vs. uniprot
Match: A0A835YX26_9STRA (Wnt-binding factor required for Wnt secretion-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX26_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.450e-13
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:  139 RFQNAWCYSFVIIVLAFMLLPRLGFFVCMLRVPKALWSRQQKWTAALLVSLFFFNNPFYAAMIWSSSP---GFWYGVYGMAVATFLALLCVFWLDLFDD---IGAGNQA 447
            +F+  W Y FV++     LLPR G+++ +    ++ WS QQKWT  LL+ LF+FN+PF+AA ++S      GF    Y + V  F+++L ++WL +F D   IGA   A
Sbjct:  205 KFEMGWKYFFVVVTFVAALLPRWGYYMKLRTTRRSTWSFQQKWTLTLLIGLFWFNDPFFAARVYSEGGTQLGFT-AFYMLCVLAFMSMLLLWWLCVFSDMVLIGAREGA 312
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BLAST of mRNA_P-wetherbeei_contig8075.1.1 vs. uniprot
Match: A0A812S7F5_SYMMI (TMEM181 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7F5_SYMMI)

HSP 1 Score: 74.3 bits (181), Expect = 5.640e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:  112 LHLLTRQRCRFQNAWCYSFVIIVLAFMLLPRLGFFVCMLRVPKALWSRQQKWTAALLVSLFFFNNPFYAAMIWSSSPGFWYGVYGMAVATFLALLCVFWLDLFDDI 429
            LH +  +  +F+  W   F++  L  M LP  GF + +L VP  LWS +Q W   LLV L FFN+PF+AA +++        +Y      FL ++ +FWL + D++
Sbjct:   79 LHTINSEYSKFELGWKCFFILTTLVVMFLPEEGFLIRLLAVPYRLWSFEQTWVLTLLVGLIFFNDPFFAAQLYTHKSDSMAILYIFFTTAFLGIVLLFWLCVLDEM 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJJ1_ECTSI5.140e-2940.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX26_9STRA3.450e-1338.53Wnt-binding factor required for Wnt secretion-doma... [more]
A0A812S7F5_SYMMI5.640e-1334.91TMEM181 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8075contigP-wetherbeei_contig8075:351..1771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_02717T0
Preferred nameTMEM181
PFAMsMIG-14_Wnt-bd
Model size453
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0008150,GO:0009405,GO:0015643,GO:0044419,GO:0051704
Exons3
Evalue4.57e-06
EggNOG OGs28HK3@1|root,2QPXU@2759|Eukaryota
Descriptiontoxic substance binding
Cds size453
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.414522-CDS-P-wetherbeei_contig8075:350..4791683187018.414522-CDS-P-wetherbeei_contig8075:350..479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8075 351..479 -
1683187018.4254062-CDS-P-wetherbeei_contig8075:736..9201683187018.4254062-CDS-P-wetherbeei_contig8075:736..920Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8075 737..920 -
1683187018.4349768-CDS-P-wetherbeei_contig8075:1631..17711683187018.4349768-CDS-P-wetherbeei_contig8075:1631..1771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8075 1632..1771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8075.1.1prot_P-wetherbeei_contig8075.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8075 351..1771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8075.1.1

>prot_P-wetherbeei_contig8075.1.1 ID=prot_P-wetherbeei_contig8075.1.1|Name=mRNA_P-wetherbeei_contig8075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
CGWVGLLNIDFVNYHTYYFEVSAAKGQEKPKAHQKHRLHLLTRQRCRFQN
AWCYSFVIIVLAFMLLPRLGFFVCMLRVPKALWSRQQKWTAALLVSLFFF
NNPFYAAMIWSSSPGFWYGVYGMAVATFLALLCVFWLDLFDDIGAGNQAS
T
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mRNA from alignment at P-wetherbeei_contig8075:351..1771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8075.1.1 ID=mRNA_P-wetherbeei_contig8075.1.1|Name=mRNA_P-wetherbeei_contig8075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1421bp|location=Sequence derived from alignment at P-wetherbeei_contig8075:351..1771- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGGTGGGTGGGGCTGTTGAATATCGATTTTGTCAACTACCATACCTA
CTACTTTGAGGTGAGTGCGGCAAAGGGGCAGGAAAAGCCGAAGGCGCACC
AAAAACACCGATTGCATTTGTTAACGCGGCAGCGGTGCAGGTGCGGTGGT
GGCAGCCGCAGCGTTGCAGCGATGACTGCACTGCGGCTACCACAACGCTC
GGCAATGCTTTGTGGTGGTGGCGCTCTGAGAGGGAGGGTAAGGACGTGTC
AAACTCCGACAAGTGCGAAGAACGAACCATCAGTTGGCTATATCCGGTTA
AACACTGAAGCTGCCGCCTACACATGCCTGAAGCAAAAGCCCTCTTAACC
TCTTCGTATTCCGTCCGGCAATTCTGCACTTCTCTTTTTGGATTTTGCGG
CGACGCCATATCGCTTCTGCGGGCAGGGCCGCGTGGTGTCGCCGCTGGGG
AACGTGGACACCGCGGACGTCTGGCAAAGCGAGACGGAACTCATCTACCT
CCAGGAGAAGTGGACATGGTGAGTTCAGCTCTGCTTGCAGACTGGACGGA
AAGGAAGAAAGGAATAACTTTACGGGTCTTCGATCTATTCCTTTTGGTTC
CTTCGAATGTTTTGCTGAGAGTTTGCTGCCGGGAGAGTACAGCGCCTTCA
ACACAACTTTCCTCCCTATGTTTCGACACGTTTTTTACTCCCTGCGCTGA
AGACACTCATGCACGGTTCCACCACCCTCCAAACACTGCGCTTCAACCGC
TTCACTCCTAATCGCCCTTCGGCCGTGTTCGTTTTTCATGCTGCCCCCGC
CTTTGTGTCCTTCCTCTCCGCCCGCGCCCACTCTCGTGCGTAAACTAACA
GGTTTCAGAACGCGTGGTGCTACTCGTTTGTGATCATCGTGCTGGCCTTC
ATGTTGCTGCCGCGGCTGGGGTTCTTCGTGTGCATGCTGCGAGTGCCCAA
GGCGCTGTGGAGCCGCCAGCAGAAGTGGACGGCGGCGCTGCTCGTGTCGC
TCTTCTTCTTCAACAACCCGTTCTACGCCGCCATGGTCGGTTGAGAGTCT
TTTTTCACCGTCATCAGCAGGAATAGGAAAGGAAGGGAGAAAGGGAAGGA
CGAAGTACGTTTCCATTTTAGGAAAGCTGCTGTTGACTGGCGTTTCTGCG
CTCAACGGCTCGTCGTTTACGCCTCTCCTATCCGTTCATTGCTTGGAAAT
ATCTCACCCAGACACCTTCCTCCAGAGACATCAGGAGGAAGTAAATCCCG
CAACCCTTTTCCCCTTCCCCCTCCCCACGCCAACCGCGACAGATCTGGTC
GTCGTCCCCCGGGTTCTGGTACGGCGTCTACGGGATGGCCGTGGCCACTT
TCCTCGCGCTGCTCTGCGTTTTCTGGCTGGACCTCTTTGACGACATCGGC
GCCGGCAACCAGGCTTCGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8075:351..1771-

>mRNA_P-wetherbeei_contig8075.1.1 ID=mRNA_P-wetherbeei_contig8075.1.1|Name=mRNA_P-wetherbeei_contig8075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig8075:351..1771- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGGTGGGTGGGGCTGTTGAATATCGATTTTGTCAACTACCATACCTA
CTACTTTGAGGTGAGTGCGGCAAAGGGGCAGGAAAAGCCGAAGGCGCACC
AAAAACACCGATTGCATTTGTTAACGCGGCAGCGGTGCAGGTTTCAGAAC
GCGTGGTGCTACTCGTTTGTGATCATCGTGCTGGCCTTCATGTTGCTGCC
GCGGCTGGGGTTCTTCGTGTGCATGCTGCGAGTGCCCAAGGCGCTGTGGA
GCCGCCAGCAGAAGTGGACGGCGGCGCTGCTCGTGTCGCTCTTCTTCTTC
AACAACCCGTTCTACGCCGCCATGATCTGGTCGTCGTCCCCCGGGTTCTG
GTACGGCGTCTACGGGATGGCCGTGGCCACTTTCCTCGCGCTGCTCTGCG
TTTTCTGGCTGGACCTCTTTGACGACATCGGCGCCGGCAACCAGGCTTCG
ACC
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