mRNA_P-wetherbeei_contig8066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8066.1.1
Unique NamemRNA_P-wetherbeei_contig8066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A7X9AFN6_9BURK (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFN6_9BURK)

HSP 1 Score: 765 bits (1976), Expect = 1.280e-271
Identity = 399/592 (67.40%), Postives = 476/592 (80.41%), Query Frame = 1
Query:   34 LCVAGLGIVLSIQGGQRAPKAVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDALTKSKIRFDVKEADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSV---NVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRILGPSA 1800
            L VA L ++ ++Q    A + +KYSDF+  V+D ++   T+ G ++TG ++ P+A  P+ F T FR+E +  PE+ L + K+  ++K+  G +WW      +PFI VF F  +IMRQA  SG QAF+FGRSKHKLVS+NRV+ TF+DVAGV EAKEELAEVVDYLK+PKKY+ LGARIPKGVLLLG PGTGKTLLGRA+AGEA VPF+YISGSDFVEMFVGVGASRVRDLFEQAKKS+PCIVFVDEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFD S     VIVLAATNRPDVLD ALLRPGRFDRQVVVDKPDIAGR+AILKVHSRGKPLG++++L  LA+RTPGFSGADLENLLNEAALLAAR  +D+I M DC EAIDRV MGPER+SRVISE ERE TAYHE GHA+VARAI +ADPVRK+TILPRG  LGVT   P+EDRY   + +LLA IAV MGGR AEEI+F +I+TGASNDIERAT LARDMVCRYGMS  +GP+H  RKQ++VFLGRD+ E  + SE  ++ ID EV  ++   YERA+ +L   R+ LD LA+ L++ EV++  +L  +LGP+A
Sbjct:    6 LSVAVLMVLNAVQSHSPAQE-LKYSDFIQAVSDGRIATATLKGDQITGTFSKPEAGKPESFKTTFRREVKPSPEEVLLEHKVATEIKQDKGIEWWGVLLQGLPFILVFFFFMLIMRQASGSGNQAFAFGRSKHKLVSDNRVKATFEDVAGVEEAKEELAEVVDYLKFPKKYQTLGARIPKGVLLLGAPGTGKTLLGRAVAGEAGVPFFYISGSDFVEMFVGVGASRVRDLFEQAKKSAPCIVFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDSSPVTPAVIVLAATNRPDVLDPALLRPGRFDRQVVVDKPDIAGRLAILKVHSRGKPLGADINLQDLAQRTPGFSGADLENLLNEAALLAARVGKDRIEMEDCTEAIDRVLMGPERKSRVISEKEREVTAYHEGGHALVARAIPEADPVRKITILPRGMTLGVTSLVPDEDRYNMTQAELLANIAVFMGGRVAEEIIFNEISTGASNDIERATELARDMVCRYGMSPVVGPLHFGRKQSKVFLGRDIVENRNFSEETSRTIDAEVHRLVSESYERARTILTENREQLDLLARVLMEKEVIEASELEDMLGPAA 596          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A101EEM1_9BACT (ATP-dependent zinc metalloprotease FtsH n=2 Tax=Bacteria TaxID=2 RepID=A0A101EEM1_9BACT)

HSP 1 Score: 631 bits (1627), Expect = 1.440e-218
Identity = 340/605 (56.20%), Postives = 431/605 (71.24%), Query Frame = 1
Query:    1 RLFRNA---LIFFLLCVAGLGIVLSIQGGQRAPKAVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPE--DALTKSKIRFDVKEADGTQWWIGAAYF---IPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRA-LGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            RL RN    LIF +L ++ +    S Q G +  + + +S FL  V +  V +V I    V G   +          T F     N P     L K  I+ DV+  + T WW  A +F    P + + G    I+   Q  GG+  SFG+S+ KL  +NR RVTF DVAGV EAKEEL EV+DYL+ PKKY+ +GARIPKG+LLLG PGTGKTLL RA+AGEA+VPF+ +SGSDFVEMFVGVGA+RVRDLF+QA++ +PCI+F+DEIDAVGR RGAG+GGGHDEREQTLNQLLVEMDGFD ++ +I++AATNRPD+LD ALLRPGRFDR +VVDKPD+ GR  ILKVH R KPL  +VDL ++ARRTPGF GADL NL+NEAALLAAR N+DKI M + EEAIDRV  GPER+SR+ISE E+   AYHEAGHA+VA+ +   DPV +++I+PRG A LG T   P EDRY   + +LL  IAV +GGR AE+IVFG I TGA ND+ERAT++AR+M+C YGMS+RLGP+ L RK  QVFLG+D+ E  ++SE +A  ID E+R ++   Y  A+K++L   + L KLA+ L++ EVL+ DD+ RIL
Sbjct:    3 RLLRNLGLYLIFIVLVISMVNTFFSPQEGVKVTQRLSFSSFLNAVENGLVKEVVIEENNVKGIMKDG---------TVFTVNIINDPSLPQMLAKKGIKVDVEPPEKTPWW--AQFFSSLFPTLLLIGAWIFILYHMQGGGGKVMSFGKSRAKLFLDNRPRVTFKDVAGVEEAKEELREVIDYLRNPKKYQRMGARIPKGILLLGPPGTGKTLLARAVAGEAEVPFFSVSGSDFVEMFVGVGAARVRDLFDQARRHAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDINLGIILIAATNRPDILDPALLRPGRFDRHIVVDKPDLKGREEILKVHCRDKPLAPDVDLKVIARRTPGFVGADLANLVNEAALLAARRNKDKITMEEFEEAIDRVLAGPERKSRLISEKEKRIIAYHEAGHALVAKMLPGVDPVHRISIIPRGHAALGYTLQLPTEDRYLTTKTELLNRIAVLLGGRVAEKIVFGDITTGAQNDLERATAIAREMICEYGMSERLGPLTLGRKHRQVFLGKDIMEDRNYSEEVAYAIDQEIRQLIDKCYSMAEKIILENMEKLRKLAETLLEREVLEADDIDRIL 596          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A2W5YIY9_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Candidatus Eremiobacter sp. RRmetagenome_bin22 TaxID=2599629 RepID=A0A2W5YIY9_9BACT)

HSP 1 Score: 628 bits (1620), Expect = 2.180e-217
Identity = 348/603 (57.71%), Postives = 437/603 (72.47%), Query Frame = 1
Query:   28 FLLCVAGLGIVLSI-----QGGQRAPKAVKYSDFLGLVADN--KVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDALTKSKIRFDVK-EADGTQWWIGA-----AYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRILGPS 1797
            ++L V G+ IVLSI     Q   +  K   YS+ L  + +N   + +VT+    +T    +   +GPKE           G    LTK  I   +K   D T    G      A+ IPF+ V  F+ +I RQ QS G QA SFGRS+ KL++ENR +VTF DVAGV EAK+EL EVV++LK+PKK++ LGARIPKG+LLLG PG+GKTLL RAIAGEA VPF+ ISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVF+DEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFD +  VI++AATNRPDVLD ALLRPGRFDRQVVVD+ D+ GR  IL VHSR KPL  +V L +LARRTPGFSGADLENLLNEAALLAAR N+ +I M+DCEEAIDRV  GPER+SR++S+ E+E  AYHE+GHA+ A+ + +ADP+ KVTI+PRG ALG+T   P EDRY   + +++  I V +G RAAEE++F +  TGA +D+++AT+LAR MV  +GMS +LGP+ L +K  QVFLGRD+ E  ++SE +A +ID EVR I+ T Y  A ++L    D L +LA+ L++ E ++ DD+ R+L  S
Sbjct:    4 YILGVVGIAIVLSIAYNYYQHSTQPQKQWSYSELLSQIDNNHESIHEVTVG---LTTATVSMVGDGPKEVVQI-----PPGSNPELTKRLIAHHIKVTGDNTASSPGLSLNLLAWLIPFVVVVVFVLIIARQLQSGGSQALSFGRSRAKLLTENRPKVTFADVAGVDEAKQELGEVVEFLKFPKKFQQLGARIPKGLLLLGPPGSGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDVNTGVILIAATNRPDVLDPALLRPGRFDRQVVVDRADVVGRAQILTVHSRNKPLAPDVRLEVLARRTPGFSGADLENLLNEAALLAARNNKTQIDMHDCEEAIDRVVAGPERKSRIMSQREKELVAYHESGHALTAKLLPNADPLHKVTIIPRGMALGITMQLPTEDRYLMTKAEIVDRIMVLLGARAAEELIFQENTTGAHDDLQKATTLARKMVMEFGMSPKLGPIALGKKHEQVFLGRDIVEERNYSEEVASQIDTEVRGIIDTCYANAYRLLETNIDKLHRLAEALLERETVEADDVDRLLSDS 598          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A1F3CP79_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Armatimonadetes bacterium RBG_16_67_12 TaxID=1797288 RepID=A0A1F3CP79_9BACT)

HSP 1 Score: 623 bits (1606), Expect = 2.410e-215
Identity = 328/597 (54.94%), Postives = 435/597 (72.86%), Query Frame = 1
Query:    1 RLFRNALIFFLLCVAGLGIVLSIQGGQRAPKA-VKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDALTKSKIRFDVK-EADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRI 1785
            R  RN +++ +  +  +    ++Q  +R P+  + Y+ F+  V   +V+ V I+ G VTG+  +      ++F TY   +  N   + L    +   V+  +  T W    +  +P + + G   +++RQAQS G QA +FG+S+ +L +EN+ +VTF+DVAGV EAKEEL EV+++LKYPKK++ LGA+IPKGVLL+G PG GKTLL +A+AGEA VPF+ ISGS+FVEMFVGVGASRVRDLF+Q KKS+PC+VF+DEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFDP+  +IV+AATNRPD+LD ALLRPGRFDR++VVD PD  GR AIL VH RGKP+  +V+L  LA+RTPGFSGADL N++NEAALLAAR N+ K+  ++ +EAIDRV  GP+RRSR++   ERE  AYHEAGHA++ R I  ADPV+KVTILPRG ALG    AP ED+Y + R+++LA I   MGGR AEEIVFG++ TGA ND E AT LAR MV  +GMS++LGP+ L R+   VFLGRD+ E  ++SE +A +ID EVR I+   YE+A+  +L  R  LD++A+ L++ E L+ DDL R+
Sbjct:    4 RYLRNLIVWAV--ILAVAFPFALQLWRRTPREEIPYNVFIEQVQSGQVSKVEISDGTVTGRLKSG-----QQFTTYVP-QGDNTYVEMLRSRGVEIRVEPRSRSTLWPSVLSTLLPILLLVGLWMLMLRQAQSGGNQAMAFGKSRARLHTENKPKVTFEDVAGVEEAKEELQEVIEFLKYPKKFQALGAKIPKGVLLVGPPGAGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQGKKSAPCLVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDPNSGIIVIAATNRPDILDPALLRPGRFDRRIVVDNPDTKGRRAILDVHVRGKPVAEDVNLDALAKRTPGFSGADLANMVNEAALLAARRNKRKVTASEMDEAIDRVVAGPQRRSRILGPKERELVAYHEAGHALLGRVIPGADPVQKVTILPRGMALGYVMSAPSEDKYTYTRQEILARITGNMGGRVAEEIVFGEVTTGAQNDFEIATELARKMVTEFGMSEKLGPLSLGRRHGPVFLGRDLVESRNYSEEIAYEIDKEVRRIIDVCYEKARAAILEHRGPLDRIAKALIERESLESDDLERL 592          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A143B645_9DELT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Desulfuromonas sp. DDH964 TaxID=1823759 RepID=A0A143B645_9DELT)

HSP 1 Score: 622 bits (1603), Expect = 3.970e-215
Identity = 329/604 (54.47%), Postives = 432/604 (71.52%), Query Frame = 1
Query:    1 RLFRNALIFFLLCVAGLGIVLSIQGGQRAPKAVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPE--DALTKSKIRFDVK-EADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTR-ILGPSA 1800
            + ++N  ++ ++ +  + +   +   +R  K + Y++F+  V D KV +VT+ G  + GKY +        F TY      N P+    L +  +   V+ + D + W+     + P + +       MRQ QS GG+A SFG+SK KL++E+  RVTF+DVAG+ EAK+EL E+V +LK PKK+  LG RIPKGVLL+G PGTGKTLL RAIAGEA VPF+ ISGSDFVEMFVGVGASRVRDLF Q KK++PCI+F+DEIDAVGR RGAG+GGGHDEREQTLNQLLVEMDGF+ +  VI++AATNRPDVLD ALLRPGRFDRQVVV +PD+ GR+ IL VH+R  P G +VD+ +LA+ TPGFSGADL NL+NEAALLAARAN+D++ M D E A D+V MG ERRS VI+E E++ TAYHEAGHA+VA  I  ADPV KV+I+PRGRA+GVT + P ED+Y   RE L   I   +GGR AEE+ F  I TGASND+ERAT++AR MVC +GMS +LGP+    K+ ++FLGRDMG   ++SE  AQ+ID+E+R I+ T Y R +++L GQ++ L K+A+ L++ E LD  ++   + GP A
Sbjct:    3 QFYKNLALWLVISLVMILLFNMMTQKEREQKPISYTNFMTSVDDGKVAEVTVQGSNIEGKYKDDSL-----FKTYA----PNDPDLIKTLREKGVVIQVRPDEDRSFWFTLLVSWGPILLLIAVWIFFMRQMQSGGGKAMSFGKSKAKLLNESSQRVTFNDVAGIDEAKDELEEIVAFLKDPKKFSRLGGRIPKGVLLVGSPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPRPDVKGRLKILSVHARKIPQGKDVDMEVLAKGTPGFSGADLANLINEAALLAARANKDEVNMEDLEAAKDKVMMGAERRSMVITEEEKKVTAYHEAGHALVAMFIPGADPVHKVSIIPRGRAMGVTMYLPTEDKYNETREGLHIRICTLLGGRVAEELTFASITTGASNDLERATAIARKMVCEWGMSDKLGPLAYGEKEGEIFLGRDMGHMKNYSENTAQQIDEEIRSIVQTNYTRTREILQGQQEALVKVAEALLERENLDGKEIREMVFGPDA 597          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A7C3K725_9FIRM (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3K725_9FIRM)

HSP 1 Score: 622 bits (1603), Expect = 4.400e-215
Identity = 323/578 (55.88%), Postives = 434/578 (75.09%), Query Frame = 1
Query:   79 QRAPK-AVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPED----ALTKSKI---RFDVKEADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            QRAP+    ++ FL LV D +V +VTI+  ++ GK  +      K+F TY       GP      AL  +K+   RF+ +    T W       +P + + G   +++RQAQS   QA SFG+S+ +L +EN+ +VTFDDVAGV EAKEEL E++++LK+PKK++ LGA+IP+GVLL+G PG+GKTLL +AIAGEA VPF+ ISGS+FVEMFVGVGASRVRDLF+QAKKS+PC++F+DEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFDP+  +I++AATNRPD+LD ALLRPGRFDR++VVD PD  GR AIL VH+RGKPL  +V+L +LA+RTPGFSGADL N++NE ALLAAR N+ +I M++ EEAI+RV  GP+R+SR++S+ ERE  AYHE GHA++A+ + +ADP  KVTILPRG ALG    AP ED+Y + R ++L  IAVA+GGR AEEI+FG++ TGA ND E+AT LAR MV  +GMS++LGP+ L ++   +FLGRD+ E  ++SE +A +ID E+R I+   YER +  L+  R+ L+++A+ L++ E L+ ++L R+L
Sbjct:   21 QRAPRDEYSFNQFLELVRDGQVKEVTISDERINGKLRDG-----KDFVTY-------GPTTDETLALLTAKVATVRFEPRSRS-TLWPNLLTSMLPILLIVGVWMLMLRQAQSGSNQAMSFGKSRARLHTENKPKVTFDDVAGVDEAKEELEEIIEFLKHPKKFQALGAKIPRGVLLVGPPGSGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKSAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDPNAGIILIAATNRPDILDPALLRPGRFDRRIVVDNPDTKGRKAILDVHARGKPLAEDVNLEILAKRTPGFSGADLANMVNEGALLAARRNKKRITMSEMEEAIERVIAGPQRKSRILSQKEREIAAYHEGGHALLAKLLPNADPPHKVTILPRGMALGYVISAPPEDKYNYTRSEILDRIAVALGGRVAEEIIFGEVTTGAQNDFEQATELARRMVTEFGMSEKLGPLTLGKRHGPIFLGRDLVESRNYSEEIAYEIDKEIRRIIDECYERGRTALVDHREQLERIARALLERESLEAEELERVL 585          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A7C2I6Z8_9FIRM (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2I6Z8_9FIRM)

HSP 1 Score: 620 bits (1599), Expect = 2.410e-214
Identity = 327/603 (54.23%), Postives = 440/603 (72.97%), Query Frame = 1
Query:    1 RLFRNALIFFLLCVAGLGIVLSIQGGQRAPKAVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGP--EDALTKSK-----IRFDVKEADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            R  RN +++ ++    +   L +   +   + + YS FL  V   +V +VTI+  ++TG+  + +     EF TY       GP  E+ L K       I+++ K      W    +  +P   + G   +++RQAQS   QA SFG+S+ +L ++N+ RVTF+DVAGV EAKEEL E++++LK+PKK++ LGA+IP+GVLL+G PG+GKTLL +A+AGEA VPF+ ISGS+FVEMFVGVGASRVRDLF+QAKKS+PC+VF+DEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFDP+  +IV+AATNRPD+LD ALLRPGRFDR+VVVD PD  GR AIL+VH+RGKP+  +V+L LLA+RTPGFSGADL N++NEAALLAAR N+ +I M + EEAI+RV  GP+R+SR++S  ERE  AYHE GHA++A+ +  ADP  KVTILPRG ALG    AP ED+Y + R ++L  I VA+GGR AEE+VFG++ TGA ND E+AT LAR MV  +GMS++LGP+ L ++   VFLGRD+ E  ++SE +A +ID E+R I+   YERA+  L+  RD L++LA+ L++ E L+ ++L R+L
Sbjct:    3 RYLRNMIVWAVIIAVVVYFFLPLYRQRTPRQELPYSVFLTRVEQGQVQEVTISDERITGRLRDGE-----EFITY-------GPVGEETLAKLSAKHVAIKYEPKSRS-VFWPNILSTLLPIFLLVGLWMLMLRQAQSGSNQAMSFGKSRARLHTDNKPRVTFEDVAGVDEAKEELQEIIEFLKHPKKFQALGAKIPRGVLLIGPPGSGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKSAPCLVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDPNAGIIVIAATNRPDILDPALLRPGRFDRRVVVDNPDTKGRRAILEVHARGKPIAEDVNLDLLAKRTPGFSGADLANMMNEAALLAARRNKKRITMAEMEEAIERVIAGPQRKSRILSPKEREIAAYHEGGHALLAKLLPSADPPHKVTILPRGMALGYVISAPPEDKYNYTRSEILDRITVALGGRVAEELVFGEVTTGAQNDFEQATELARKMVTEFGMSEKLGPLSLGKRHGPVFLGRDLVESRNYSEEIAYEIDKEIRRIIDECYERARATLMEHRDQLERLARTLLERESLEAEELERVL 592          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A7Y3KF88_9BACT (ATP-dependent zinc metalloprotease FtsH n=4 Tax=root TaxID=1 RepID=A0A7Y3KF88_9BACT)

HSP 1 Score: 620 bits (1598), Expect = 3.660e-214
Identity = 332/587 (56.56%), Postives = 421/587 (71.72%), Query Frame = 1
Query:   55 IVLSIQGGQRAPKAVK---YSDFLGLVADNKVTDVTINGGKVTGK------YTNPDANGPKEFYTYFRKENQNGPEDALTKSKIRFDVKEADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            ++L +     AP  V+   Y  F+  +   K+      G   TGK      YT    N    F    +   ++G          ++  +    T +  G   F+P + +   +  I RQAQS G QA +FGRS+ K++SENR +VTF+DVAGV EAK EL E+VD+LKYPKKY++LGARIPKGVLLLG PG+GKTLL RA+AGEA VPF+ ISGSDFVEMFVGVGASRVRDLFEQAKKS+PCI+F+DEIDAVGRQRGAG+GGGHDEREQTLNQLLVEMDGFD +  VI++AATNRPDVLD ALLRPGRFDRQ+VVD+ D+ GR  IL VH+R KPL   V L  LA+RTPGFSGADLENLLNEAALLAAR N++ I M+DC+EAIDRV +GPER+S V+S+ E+E+TAYHE+GHA++   +  +DP+ KVTI+PRG ALG+T   PE+DR+   RE+LL+ I +A+GGR AEEI FG + TGASND E+AT LAR MV +YGMS  LGP+   R   QVFLGRD GE  ++SE +A KID EVR I+ T YER +++L    D ++++   L++ E ++ D++  I+
Sbjct:   17 VLLIVDRFVSAPTTVRPLDYGSFIAQLESGKIESFHAVGKLGTGKTTAGKSYTVTIPNTDSAFVAQLQAHIKSG----------KWGFESPPNTSFLSGLGSFLPMLALVVLMIFIFRQAQSGGSQAMNFGRSRAKMLSENRAKVTFEDVAGVEEAKVELGEIVDFLKYPKKYQSLGARIPKGVLLLGPPGSGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDQNTGVILIAATNRPDVLDPALLRPGRFDRQIVVDRADLKGRQKILAVHARNKPLAREVQLDTLAKRTPGFSGADLENLLNEAALLAARRNKNVIEMSDCDEAIDRVMVGPERKSMVMSQKEKENTAYHESGHAILGAMLDKSDPIHKVTIIPRGMALGITWSLPEDDRHSVTREELLSDITMALGGRLAEEIQFGDVTTGASNDFEKATQLARRMVTQYGMSD-LGPIQYGRGAHQVFLGRDFGEERNYSEEVASKIDSEVRRIVETCYERGRQLLTTNWDKVERMVASLLEHETVEADEVMAIV 592          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: Q74C66_GEOSL (ATP-dependent zinc metalloprotease FtsH n=5 Tax=Geobacter TaxID=28231 RepID=Q74C66_GEOSL)

HSP 1 Score: 618 bits (1594), Expect = 5.850e-214
Identity = 328/568 (57.75%), Postives = 418/568 (73.59%), Query Frame = 1
Query:  103 YSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDA-----LTKSKIRFDVK-EADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            YSDF+  V   KV+ VT+ G ++ GKY++      KEF +Y        P DA     L + KI    K E +   W+     + P +F+ G     MRQ Q  GG+A +FG+S+ KL++E + RVTF+DVAGV EAKEEL E++ +LK PKK+  LG RIPKGVLL+G PGTGKTLL RA+AGEA VPF+ ISGSDFVEMFVGVGASRVRDLF Q KK++PCI+F+DEIDAVGR RGAG+GGGHDEREQTLNQLLVEMDGF+ +  VI++AATNRPDVLD ALLRPGRFDRQVVV +PD+ GR  ILKVH++  PL S+VDLG++AR TPGFSGADL N++NEAALLAAR ++  + M D ++A D+V MG ERRS VISE E+++TAYHEAGH +VA+ I   DPV KV+I+PRGRALGVT   P ED++ +N+E LL  IAV MGGRAAEEI+F ++ TGA NDIERAT +AR MVC +GMS+++GPV   +K+  +FLGRDM    ++SEA A +ID+E+R I+   Y R K++L     +L  LA +L++ E L  D++ RI+
Sbjct:   37 YSDFIAAVDAGKVSTVTVQGNEIIGKYSDG-----KEFRSY-------KPTDAMLSEKLLEKKINVSAKPEEEKVSWFSIFISWFPLLFLVGVWIFFMRQMQGGGGKAMAFGKSRAKLLTEAQGRVTFEDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPQPDVKGREMILKVHTKKTPLASDVDLGVIARGTPGFSGADLSNVVNEAALLAARKDKSFVEMKDFDDAKDKVLMGVERRSMVISEEEKKNTAYHEAGHTLVAKLIPGTDPVHKVSIIPRGRALGVTMQLPIEDKHSYNKESLLNRIAVLMGGRAAEEIIFNELTTGAGNDIERATEIARKMVCEWGMSEKMGPVTFGKKEESIFLGRDMSMHKNYSEATAVEIDEEIRKIIDGSYSRVKQLLNENLSVLHCLATQLIEKENLTGDEVDRII 592          
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Match: A0A2D6BJ35_9DELT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BJ35_9DELT)

HSP 1 Score: 619 bits (1595), Expect = 9.090e-214
Identity = 321/581 (55.25%), Postives = 428/581 (73.67%), Query Frame = 1
Query:   55 IVLSIQGGQRAPKAVKYSDFLGLVADNKVTDVTINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDALTKSK---IRFDVKEADGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSENRVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPGTGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSPCIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLAATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVDLGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMGPERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGVTQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERATSLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDDEVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRIL 1788
            +V  ++ GQ+ P    Y++F+ L+    V  +T+  G ++GK  N       +F +Y  + + +   + L +     I+   K  + + W     +++PFI +       +RQ QS GG+A SFG+S+ +L++EN+ RVTFDDVAG+ E+K EL E++ +L+ PKK+  LG RIPKGVLL+G PGTGKTLL RA+AGEA VPF+ ISGSDFVEMFVGVGASRVRDLF+Q KK++PCI+F+DEIDAVGR RGAG+GGGHDEREQTLNQLLVEMDGF+ +  VI++AATNRPDVLD ALLRPGRFDR+VVV +PD+ GR+AILKVH+R  PLG NVDL +LAR TPGF GADL+NL+NEAALLAAR + +++ M D E A D+V MG ERRS ++S+ E+  TAYHEAGHA+V+     +DPV KVTI+PRG ALG+TQ  PEEDR+   R+Q++A I +AMGGRAAEE+VF   +TGASND+++ATSLARDMVC YGMS R+GPV        VFLGRD+G   ++S+  A+ IDDEV+ ++   Y++AK+VL  +RD+LD++   L++ E L+  DL ++L
Sbjct:   14 LVTVLRQGQQTPTDYPYTEFISLLESGDVDSITLEEGLISGKLLNG-----TDFTSYVHEIHYDALHERLAQHPELAIKSQAKR-ESSVWQQMLIWWVPFIILIALWVFFVRQMQSGGGKAMSFGKSRARLLTENQHRVTFDDVAGIEESKNELEEIIAFLRDPKKFTRLGGRIPKGVLLVGAPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQGKKNAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRRVVVPRPDLRGRLAILKVHTRRVPLGDNVDLEVLARGTPGFVGADLQNLVNEAALLAARLDANRVGMADFENAKDKVLMGAERRSMIMSDEEKRVTAYHEAGHALVSLLTEHSDPVHKVTIIPRGMALGLTQTLPEEDRHNFTRKQMVAQILLAMGGRAAEELVFEHFSTGASNDLQQATSLARDMVCHYGMSDRVGPVSFDDGGGDVFLGRDLGTRKNYSDKTAEMIDDEVQQMLSGLYDQAKEVLTSRRDVLDRITSALLERETLETSDLEKLL 588          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFN6_9BURK1.280e-27167.40ATP-dependent zinc metalloprotease FtsH n=1 Tax=Bu... [more]
A0A101EEM1_9BACT1.440e-21856.20ATP-dependent zinc metalloprotease FtsH n=2 Tax=Ba... [more]
A0A2W5YIY9_9BACT2.180e-21757.71ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ca... [more]
A0A1F3CP79_9BACT2.410e-21554.94ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ar... [more]
A0A143B645_9DELT3.970e-21554.47ATP-dependent zinc metalloprotease FtsH n=1 Tax=De... [more]
A0A7C3K725_9FIRM4.400e-21555.88ATP-dependent zinc metalloprotease FtsH n=1 Tax=Fi... [more]
A0A7C2I6Z8_9FIRM2.410e-21454.23ATP-dependent zinc metalloprotease FtsH n=1 Tax=Fi... [more]
A0A7Y3KF88_9BACT3.660e-21456.56ATP-dependent zinc metalloprotease FtsH n=4 Tax=ro... [more]
Q74C66_GEOSL5.850e-21457.75ATP-dependent zinc metalloprotease FtsH n=5 Tax=Ge... [more]
A0A2D6BJ35_9DELT9.090e-21455.25ATP-dependent zinc metalloprotease FtsH n=1 Tax=De... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8066contigP-wetherbeei_contig8066:133..1971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1382356.JQMP01000003_gene2325
Preferred nameftsH1
PFAMsAAA,Peptidase_M41
Model size1839
Max annot lvl189775|Thermomicrobia
KEGG koko:K03798
KEGG ModuleM00742
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.38e-214
EggNOG OGsCOG0465@1|root,COG0465@2|Bacteria,2G5J3@200795|Chloroflexi,27XT6@189775|Thermomicrobia
DescriptionActs as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Cds size1839
COG categoryO
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.2216647-CDS-P-wetherbeei_contig8066:132..19711683187018.2216647-CDS-P-wetherbeei_contig8066:132..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8066 133..1971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8066.1.1prot_P-wetherbeei_contig8066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8066 133..1971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8066.1.1

>prot_P-wetherbeei_contig8066.1.1 ID=prot_P-wetherbeei_contig8066.1.1|Name=mRNA_P-wetherbeei_contig8066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=613bp
RLFRNALIFFLLCVAGLGIVLSIQGGQRAPKAVKYSDFLGLVADNKVTDV
TINGGKVTGKYTNPDANGPKEFYTYFRKENQNGPEDALTKSKIRFDVKEA
DGTQWWIGAAYFIPFIFVFGFIFMIMRQAQSSGGQAFSFGRSKHKLVSEN
RVRVTFDDVAGVAEAKEELAEVVDYLKYPKKYENLGARIPKGVLLLGEPG
TGKTLLGRAIAGEAKVPFYYISGSDFVEMFVGVGASRVRDLFEQAKKSSP
CIVFVDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFDPSVNVIVLA
ATNRPDVLDSALLRPGRFDRQVVVDKPDIAGRMAILKVHSRGKPLGSNVD
LGLLARRTPGFSGADLENLLNEAALLAARANRDKIFMNDCEEAIDRVQMG
PERRSRVISEGERESTAYHEAGHAMVARAIADADPVRKVTILPRGRALGV
TQFAPEEDRYCHNREQLLAIIAVAMGGRAAEEIVFGKINTGASNDIERAT
SLARDMVCRYGMSQRLGPVHLSRKQTQVFLGRDMGEGDSHSEALAQKIDD
EVRDIMVTQYERAKKVLLGQRDLLDKLAQELVKMEVLDDDDLTRILGPSA
NQQLRGEVQAPEP
back to top

mRNA from alignment at P-wetherbeei_contig8066:133..1971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8066.1.1 ID=mRNA_P-wetherbeei_contig8066.1.1|Name=mRNA_P-wetherbeei_contig8066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1839bp|location=Sequence derived from alignment at P-wetherbeei_contig8066:133..1971+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTTGTTCCGCAATGCGTTAATCTTTTTCTTGCTCTGTGTCGCAGGCCT CGGCATCGTCCTCAGCATCCAGGGAGGGCAGCGCGCTCCCAAAGCCGTCA AATACTCCGACTTTCTCGGTCTGGTCGCGGACAACAAAGTCACGGACGTC ACCATCAACGGCGGAAAAGTCACCGGCAAATACACCAACCCGGACGCCAA TGGTCCCAAAGAGTTCTACACTTACTTTCGAAAAGAGAACCAGAACGGTC CTGAGGACGCCCTCACCAAGTCCAAAATCCGCTTCGACGTAAAAGAAGCT GACGGGACGCAGTGGTGGATCGGCGCGGCCTACTTCATCCCCTTTATCTT CGTTTTTGGCTTTATCTTTATGATCATGCGCCAGGCTCAGTCGAGCGGCG GCCAGGCCTTCTCCTTCGGACGCAGCAAGCATAAGCTGGTCTCGGAAAAC CGCGTGCGCGTCACTTTCGACGACGTTGCCGGCGTGGCCGAAGCCAAAGA AGAGCTCGCCGAGGTGGTCGACTATCTGAAGTATCCCAAAAAGTATGAAA ATTTGGGCGCCCGCATCCCCAAGGGCGTGCTGCTCCTGGGCGAGCCCGGC ACCGGCAAGACGCTTCTGGGCCGCGCTATCGCCGGCGAAGCCAAGGTCCC GTTCTACTACATCAGCGGCTCGGATTTCGTGGAAATGTTCGTGGGCGTCG GCGCCTCGCGCGTCCGCGACCTGTTCGAGCAGGCCAAGAAATCTTCGCCC TGCATCGTCTTCGTCGATGAGATCGACGCGGTCGGCCGCCAGCGTGGTGC CGGTGTGGGCGGTGGGCACGACGAGCGCGAGCAGACCTTGAATCAATTGC TCGTCGAAATGGACGGCTTCGACCCCAGCGTCAACGTCATCGTGCTGGCC GCCACCAATCGCCCCGACGTGCTCGACTCGGCTTTGCTTCGTCCCGGACG CTTTGATCGCCAGGTCGTGGTCGACAAGCCCGACATCGCCGGACGGATGG CCATCCTCAAAGTTCATAGCCGCGGCAAGCCGCTCGGCTCTAACGTTGAC CTCGGCCTGCTGGCCCGCCGCACTCCCGGTTTCTCGGGCGCCGATCTGGA GAATCTCCTCAACGAGGCAGCTCTTCTGGCGGCTCGCGCCAATCGCGACA AAATCTTCATGAACGACTGTGAAGAAGCTATCGATCGCGTCCAGATGGGC CCCGAGCGCCGCAGCCGCGTCATTTCTGAGGGCGAGCGCGAGAGCACCGC CTATCACGAGGCTGGCCACGCTATGGTGGCGCGAGCCATCGCTGACGCGG ACCCGGTCCGCAAGGTCACGATTCTACCGCGCGGTCGCGCTCTGGGCGTC ACTCAGTTTGCGCCCGAAGAAGACCGCTACTGCCACAATCGCGAACAGCT CCTGGCCATCATCGCCGTGGCGATGGGCGGCCGGGCCGCTGAAGAAATCG TGTTCGGCAAGATCAACACCGGTGCCAGCAACGACATCGAACGCGCAACC AGCCTGGCTCGCGACATGGTTTGCCGCTACGGCATGAGCCAGCGCCTCGG TCCGGTCCACCTCTCGCGTAAGCAGACCCAGGTGTTCCTGGGCCGCGATA TGGGCGAGGGCGATAGTCACTCGGAAGCTCTGGCTCAAAAGATTGACGAC GAAGTGCGCGACATCATGGTGACGCAATATGAGCGGGCCAAGAAGGTTTT GCTCGGCCAGCGGGACCTGCTGGATAAGCTGGCTCAGGAGCTGGTGAAGA TGGAAGTCCTCGACGACGACGATCTGACGCGCATCCTGGGGCCCTCGGCC AATCAGCAACTGCGGGGTGAAGTTCAAGCTCCCGAGCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8066:133..1971+

>mRNA_P-wetherbeei_contig8066.1.1 ID=mRNA_P-wetherbeei_contig8066.1.1|Name=mRNA_P-wetherbeei_contig8066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1839bp|location=Sequence derived from alignment at P-wetherbeei_contig8066:133..1971+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTTGTTCCGCAATGCGTTAATCTTTTTCTTGCTCTGTGTCGCAGGCCT
CGGCATCGTCCTCAGCATCCAGGGAGGGCAGCGCGCTCCCAAAGCCGTCA
AATACTCCGACTTTCTCGGTCTGGTCGCGGACAACAAAGTCACGGACGTC
ACCATCAACGGCGGAAAAGTCACCGGCAAATACACCAACCCGGACGCCAA
TGGTCCCAAAGAGTTCTACACTTACTTTCGAAAAGAGAACCAGAACGGTC
CTGAGGACGCCCTCACCAAGTCCAAAATCCGCTTCGACGTAAAAGAAGCT
GACGGGACGCAGTGGTGGATCGGCGCGGCCTACTTCATCCCCTTTATCTT
CGTTTTTGGCTTTATCTTTATGATCATGCGCCAGGCTCAGTCGAGCGGCG
GCCAGGCCTTCTCCTTCGGACGCAGCAAGCATAAGCTGGTCTCGGAAAAC
CGCGTGCGCGTCACTTTCGACGACGTTGCCGGCGTGGCCGAAGCCAAAGA
AGAGCTCGCCGAGGTGGTCGACTATCTGAAGTATCCCAAAAAGTATGAAA
ATTTGGGCGCCCGCATCCCCAAGGGCGTGCTGCTCCTGGGCGAGCCCGGC
ACCGGCAAGACGCTTCTGGGCCGCGCTATCGCCGGCGAAGCCAAGGTCCC
GTTCTACTACATCAGCGGCTCGGATTTCGTGGAAATGTTCGTGGGCGTCG
GCGCCTCGCGCGTCCGCGACCTGTTCGAGCAGGCCAAGAAATCTTCGCCC
TGCATCGTCTTCGTCGATGAGATCGACGCGGTCGGCCGCCAGCGTGGTGC
CGGTGTGGGCGGTGGGCACGACGAGCGCGAGCAGACCTTGAATCAATTGC
TCGTCGAAATGGACGGCTTCGACCCCAGCGTCAACGTCATCGTGCTGGCC
GCCACCAATCGCCCCGACGTGCTCGACTCGGCTTTGCTTCGTCCCGGACG
CTTTGATCGCCAGGTCGTGGTCGACAAGCCCGACATCGCCGGACGGATGG
CCATCCTCAAAGTTCATAGCCGCGGCAAGCCGCTCGGCTCTAACGTTGAC
CTCGGCCTGCTGGCCCGCCGCACTCCCGGTTTCTCGGGCGCCGATCTGGA
GAATCTCCTCAACGAGGCAGCTCTTCTGGCGGCTCGCGCCAATCGCGACA
AAATCTTCATGAACGACTGTGAAGAAGCTATCGATCGCGTCCAGATGGGC
CCCGAGCGCCGCAGCCGCGTCATTTCTGAGGGCGAGCGCGAGAGCACCGC
CTATCACGAGGCTGGCCACGCTATGGTGGCGCGAGCCATCGCTGACGCGG
ACCCGGTCCGCAAGGTCACGATTCTACCGCGCGGTCGCGCTCTGGGCGTC
ACTCAGTTTGCGCCCGAAGAAGACCGCTACTGCCACAATCGCGAACAGCT
CCTGGCCATCATCGCCGTGGCGATGGGCGGCCGGGCCGCTGAAGAAATCG
TGTTCGGCAAGATCAACACCGGTGCCAGCAACGACATCGAACGCGCAACC
AGCCTGGCTCGCGACATGGTTTGCCGCTACGGCATGAGCCAGCGCCTCGG
TCCGGTCCACCTCTCGCGTAAGCAGACCCAGGTGTTCCTGGGCCGCGATA
TGGGCGAGGGCGATAGTCACTCGGAAGCTCTGGCTCAAAAGATTGACGAC
GAAGTGCGCGACATCATGGTGACGCAATATGAGCGGGCCAAGAAGGTTTT
GCTCGGCCAGCGGGACCTGCTGGATAAGCTGGCTCAGGAGCTGGTGAAGA
TGGAAGTCCTCGACGACGACGATCTGACGCGCATCCTGGGGCCCTCGGCC
AATCAGCAACTGCGGGGTGAAGTTCAAGCTCCCGAGCCG
back to top