mRNA_P-wetherbeei_contig8064.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8064.3.1
Unique NamemRNA_P-wetherbeei_contig8064.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.3.1 vs. uniprot
Match: Q8QNH5_ESV1K (EsV-1-103 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH5_ESV1K)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-20
Identity = 48/77 (62.34%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  199 RRQRKEDEANEKVELLTRISGLSKNGFQASKKLTLKDDLDEIRYECYKLQRESNLKKSTKLMQKVLVSITAFVEMAN 429
            +++RKE+  +EKVE+LTRI+ LSKNGF  +KK  +KDD+DEIRYECY++QRESN KKS K+M++VLV+IT  VE  N
Sbjct:  222 KKKRKEELLHEKVEMLTRIANLSKNGFTTTKKWDVKDDIDEIRYECYRMQRESNSKKSMKIMRRVLVTITTLVETGN 298
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.3.1 vs. uniprot
Match: D8LPD4_ECTSI (EsV-1-103 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-19
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  199 RRQRKEDEANEKVELLTRISGLSKNGFQASKKLTLKDDLDEIRYECYKLQRESNLKKSTKLMQKVLVSITAFVEMAN 429
            +++RKE+  +EKVE+LTRI+ LSKNGF  +K+  +KDD+DE+RYECY++QRESN KKS K+M++VLV+IT  VE  N
Sbjct:  226 KKKRKEELLHEKVEMLTRIANLSKNGFTTTKQWDVKDDIDEVRYECYRMQRESNSKKSIKIMRRVLVTITTLVETGN 302
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.3.1 vs. uniprot
Match: B5LWB9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB9_9PHYC)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-15
Identity = 38/75 (50.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:  205 QRKEDEANEKVELLTRISGLSKNGFQASKKLTLKDDLDEIRYECYKLQRESNLKKSTKLMQKVLVSITAFVEMAN 429
            +RKE+ A EK+E+L+R+S LS  GF A+KK ++ DD+D+IR+ECY++ RESN +KS K M+ +L+++   VE AN
Sbjct:  112 KRKEEIAQEKIEMLSRVSRLSHEGFSATKKWSMNDDIDDIRFECYRMTRESNARKSVKTMRHILITLATVVEFAN 186
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.3.1 vs. uniprot
Match: Q6XM14_9PHYC (FirrV-1-B22 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM14_9PHYC)

HSP 1 Score: 80.5 bits (197), Expect = 3.480e-15
Identity = 38/75 (50.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:  205 QRKEDEANEKVELLTRISGLSKNGFQASKKLTLKDDLDEIRYECYKLQRESNLKKSTKLMQKVLVSITAFVEMAN 429
            +RK++   EK+E+L+RI+ LS+ GF ASKK + KDD+D+IR+ECY++ RESN +KS K MQ +L+++   +E AN
Sbjct:  131 KRKQELMQEKIEMLSRITRLSQEGFVASKKWSTKDDVDDIRFECYRMTRESNTRKSLKTMQHILITVATVIEFAN 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8064.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNH5_ESV1K2.040e-2062.34EsV-1-103 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD4_ECTSI1.020e-1959.74EsV-1-103 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B5LWB9_9PHYC1.080e-1550.67Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM14_9PHYC3.480e-1550.67FirrV-1-B22 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8064contigP-wetherbeei_contig8064:2477..2905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog654926.Q8QNH5_ESV1K
Model size429
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-21
EggNOG OGs4QH5P@10239|Viruses,4QZW0@35237|dsDNA viruses no RNA stage
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.1441474-CDS-P-wetherbeei_contig8064:2476..29051683187018.1441474-CDS-P-wetherbeei_contig8064:2476..2905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8064 2477..2905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8064.3.1prot_P-wetherbeei_contig8064.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8064 2477..2905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8064.3.1

>prot_P-wetherbeei_contig8064.3.1 ID=prot_P-wetherbeei_contig8064.3.1|Name=mRNA_P-wetherbeei_contig8064.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
LAKGTGHQKKKKYISSDDDTSDSSDVLTDSEESNSGSGSDSCSGSDGSES
GSFSESDSGESRVYRSRRQRKEDEANEKVELLTRISGLSKNGFQASKKLT
LKDDLDEIRYECYKLQRESNLKKSTKLMQKVLVSITAFVEMAN
back to top

mRNA from alignment at P-wetherbeei_contig8064:2477..2905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8064.3.1 ID=mRNA_P-wetherbeei_contig8064.3.1|Name=mRNA_P-wetherbeei_contig8064.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig8064:2477..2905+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAAAGGGGACGGGTCATCAAAAGAAAAAGAAGTACATCAGTTCCGA
TGACGACACGTCCGATTCGTCGGACGTGCTCACGGATTCTGAAGAGTCCA
ACTCGGGTTCGGGATCAGATTCTTGTTCGGGGTCCGACGGATCGGAATCG
GGTTCCTTTTCTGAATCGGATTCCGGAGAATCCAGGGTGTATCGATCGCG
TCGGCAACGCAAAGAGGACGAGGCAAACGAAAAGGTGGAGCTACTCACTC
GGATCTCGGGTCTTTCCAAAAACGGATTTCAAGCATCCAAAAAGCTGACG
TTAAAGGACGACTTGGATGAAATCCGTTACGAGTGCTACAAGCTTCAACG
AGAGAGCAATCTTAAAAAGTCCACAAAGTTGATGCAAAAGGTGTTGGTTT
CTATTACAGCATTCGTGGAAATGGCAAAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8064:2477..2905+

>mRNA_P-wetherbeei_contig8064.3.1 ID=mRNA_P-wetherbeei_contig8064.3.1|Name=mRNA_P-wetherbeei_contig8064.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig8064:2477..2905+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAAAGGGGACGGGTCATCAAAAGAAAAAGAAGTACATCAGTTCCGA
TGACGACACGTCCGATTCGTCGGACGTGCTCACGGATTCTGAAGAGTCCA
ACTCGGGTTCGGGATCAGATTCTTGTTCGGGGTCCGACGGATCGGAATCG
GGTTCCTTTTCTGAATCGGATTCCGGAGAATCCAGGGTGTATCGATCGCG
TCGGCAACGCAAAGAGGACGAGGCAAACGAAAAGGTGGAGCTACTCACTC
GGATCTCGGGTCTTTCCAAAAACGGATTTCAAGCATCCAAAAAGCTGACG
TTAAAGGACGACTTGGATGAAATCCGTTACGAGTGCTACAAGCTTCAACG
AGAGAGCAATCTTAAAAAGTCCACAAAGTTGATGCAAAAGGTGTTGGTTT
CTATTACAGCATTCGTGGAAATGGCAAAT
back to top