mRNA_P-wetherbeei_contig806.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig806.1.1
Unique NamemRNA_P-wetherbeei_contig806.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig806contigP-wetherbeei_contig806:3979..7136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2085
Hectar predicted targeting categorysignal peptide
Exons5
Cds size1671
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig806.1.1prot_P-wetherbeei_contig806.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig806 4390..7133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.8720422-UTR-P-wetherbeei_contig806:3978..43891683187017.8720422-UTR-P-wetherbeei_contig806:3978..4389Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig806 3979..4389 -
1683187017.928093-UTR-P-wetherbeei_contig806:7133..71361683187017.928093-UTR-P-wetherbeei_contig806:7133..7136Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig806 7134..7136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.8811383-CDS-P-wetherbeei_contig806:4389..47041683187017.8811383-CDS-P-wetherbeei_contig806:4389..4704Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig806 4390..4704 -
1683187017.8901708-CDS-P-wetherbeei_contig806:5034..52231683187017.8901708-CDS-P-wetherbeei_contig806:5034..5223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig806 5035..5223 -
1683187017.8999772-CDS-P-wetherbeei_contig806:5389..54161683187017.8999772-CDS-P-wetherbeei_contig806:5389..5416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig806 5390..5416 -
1683187017.9122288-CDS-P-wetherbeei_contig806:5751..68071683187017.9122288-CDS-P-wetherbeei_contig806:5751..6807Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig806 5752..6807 -
1683187017.9202743-CDS-P-wetherbeei_contig806:7049..71331683187017.9202743-CDS-P-wetherbeei_contig806:7049..7133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig806 7050..7133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig806.1.1

>prot_P-wetherbeei_contig806.1.1 ID=prot_P-wetherbeei_contig806.1.1|Name=mRNA_P-wetherbeei_contig806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=557bp
MPACAELCVLQLVAALYHLLVGRRELWEECLHFALELFRTARWESGGGRR
GAADADAAAGAPAVCSPVYTRLVTTLLYFQRVAAHRKALLSVPHPVVRCA
VPQAEIAAATAGAGDGSSDGGGNGERSDGKRQDAGGCGGGGGGARSTGKA
AVPAAATVATNDQHTGLHARPRRASAAAVAAAIAAAAAVEKDEDDSPSPP
HVAGTPSASRRRPPLSNAPRSATAGGIGSPLSVMKCLNHVAERHAPVVLG
RRLAAGRPGPPACTTVAPSSDASLDRPTGGGGGGTCGGGGTGSRGGESGD
EGSYASFAIGYSSRDSSWRGGADECGGGGGGGGGGGFGGGFGGGALCGTV
IAPGRMVPPRGYMENVFALVEWCYNRCLEKVAEGGVLLLVEALSARNVAL
FCQDYSAERVRRAASDWAVVMSLLRSCPGLMAMFPPSSLRAKALATSCAG
ALSRAAYEDFLSSWSLCQRNTGGALIPAVPYDEPFAPELLIDPRLNPVFV
RVIEICLEWHEPATEAADVAVRAAAAMAVEHGEAAMETAAAAAAGAGGNG
GGDSDG*
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mRNA from alignment at P-wetherbeei_contig806:3979..7136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig806.1.1 ID=mRNA_P-wetherbeei_contig806.1.1|Name=mRNA_P-wetherbeei_contig806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3158bp|location=Sequence derived from alignment at P-wetherbeei_contig806:3979..7136- (Phaeothamnion wetherbeei SAG_119_79)
TCCATGCCGGCCTGCGCAGAGCTCTGTGTGCTGCAGCTGGTCGCCGCCCT
CTACCACCTCCTCGTCGGGAGGCGGGAACTGTGGGAAGTGCGTCCGTCGA
TTTGGAATTCTGTGACAATCTTTTAAGCGAGGGGAAACACAGAAACGAAA
GGCCTTAAACAGGGATCGGGGAAAAGGAGGCAAGGAGAATGGCTCTGTTC
TGTGATACCTTGCTGAGACCCCAGATCCGTGGATTGACCATGCTCGCTTC
TCCTTTACCTATGCGTTCTCTCCATTTTAGACAACCAAAAAATCGGCGCA
TGCACGTGCGACGCCGCGTCTTGCCACAGGAGTGCCTCCACTTCGCGCTG
GAGCTGTTTCGCACTGCGAGGTGGGAGAGCGGCGGCGGCCGGCGGGGGGC
GGCCGACGCCGACGCTGCGGCCGGCGCACCCGCCGTCTGCTCTCCCGTCT
ACACCCGCCTCGTGACTACGCTACTCTATTTCCAGCGCGTCGCCGCGCAC
CGGAAGGCGTTGTTGTCGGTGCCGCATCCGGTCGTGCGCTGCGCCGTCCC
GCAGGCGGAGATTGCCGCCGCCACGGCCGGCGCCGGCGACGGCAGCAGCG
ATGGCGGTGGCAACGGCGAGCGTAGTGATGGCAAGCGCCAAGATGCTGGC
GGTTGCGGTGGCGGCGGCGGCGGCGCCAGAAGCACAGGGAAGGCGGCTGT
ACCGGCGGCGGCCACCGTGGCGACAAATGACCAGCACACGGGACTGCACG
CCCGCCCGCGAAGAGCATCCGCCGCGGCGGTGGCCGCTGCCATCGCCGCG
GCCGCCGCCGTCGAAAAAGACGAGGATGACTCGCCGTCTCCGCCGCACGT
CGCCGGGACGCCCTCCGCGTCCCGGCGCCGGCCGCCTTTGTCTAACGCCC
CACGGTCTGCCACTGCCGGCGGCATCGGGTCCCCGCTGAGCGTGATGAAG
TGCCTCAACCACGTCGCCGAGCGGCACGCGCCGGTGGTTCTCGGGCGGCG
GCTGGCGGCTGGGCGGCCGGGGCCGCCGGCGTGTACTACCGTCGCTCCGT
CCAGCGACGCATCCCTCGACCGGCCAACTGGCGGCGGTGGCGGCGGAACC
TGCGGCGGGGGGGGAACCGGCAGCAGAGGCGGCGAGAGCGGCGACGAAGG
CAGTTACGCCAGTTTTGCCATCGGATACAGCAGCAGAGACAGCAGCTGGA
GAGGCGGCGCAGACGAGTGCGGCGGGGGTGGCGGCGGTGGCGGCGGCGGC
GGCTTCGGCGGCGGCTTCGGCGGCGGCGCTTTGTGCGGTACTGTTATTGC
TCCGGGGCGGATGGTGCCGCCTCGAGGCTACATGGAGAACGTGTTCGCTC
TCGTCGAGTGGTGCTACAACCGCTGCCTCGAGAAGGTGAGGAAGGACCGA
CCAAATTTTCGATCGATTGGTTGGTGGCATTCTGTACCGTTGACAATTAA
GTGGTGTTCTCCGCTCTGTCTTGGGTCATCACGAACCTATGCCGATGAAC
CTGGTCGGCATTATGTTCTTGGCGGCGCTGCCACCCTGTCGCCCTGGGCG
AGCAAAAGCGTAGCGTTTCGTGGGCCTACTTTTGATATGCGCGGGCGTTG
CCGCGGGGCAGAAGAAACGACCTCTGTTGCTTTAAACCGCCGTTGCAACT
ACCGCTCACTTCCCTCGCGGCTGCCGGTGCCGTTGCCACCGTTTTCCCTC
TGACCGTACCGCTGTTGTAGGTGGCGGAAGGAGGCGTGCTGCTGCTGGTG
AGTACGGCGAATGGCCTGCTCCCCCCGTTTGTGTGCCTACCTATCCGCTC
GTGCTTTTGGATGGGCGGTTGAATTCAGGAACTGGTGGACCATTTCTCTC
CATTTTCGATACTGTTTCCAATGGCAAGTCCCCCAGTGGCTGTGCTCTCT
CAATGCCGGACAGGTGGAGGCGCTCTCGGCGCGGAATGTCGCGCTCTTCT
GCCAGGACTACTCGGCGGAGCGGGTGCGCCGGGCGGCCTCGGACTGGGCG
GTCGTCATGTCTTTGCTTCGCAGCTGCCCAGGATTGATGGCCATGTTCCC
GCCGTCGTCGCTGCGGGCCAAGGCCCTGGCGACGAGCTGCGCCGGCGCGC
TGGTGAGTCGAGGGTTCCAGAGGGTTTGGTAGGCATTTGGAGTTGCACGG
GACCGTCGCTGGATTCGGTTGGTTTATTCGGGACAGCTAATCTTCAGCAG
GGCTTGGTTTGCACGGGTCGCCGTTGCATCCGCCGCTTTCGGCATGGGGG
GTCGCTGGTCGTCTTAGTCTGCGGGGCAGAGTCTTGTAAGCGGTGGTTGC
CACAATTACACAGCCAGATTGGCCGTGATTGGGGCTGACCTCTTTCCTCT
CCCACTTTTCTCGTTCAGTGGTTTGCTATCCTTTCTCCTTTTGCCACTCT
TCCCGCGAACGACAATTACCATTGATCAACAGAGCCGGGCGGCGTACGAA
GATTTCCTCTCATCGTGGAGCCTCTGCCAGCGCAACACGGGCGGCGCCCT
CATTCCGGCCGTCCCCTACGATGAGCCATTCGCGCCGGAGCTGCTCATCG
ACCCACGCCTCAACCCCGTCTTCGTGCGGGTCATTGAGATCTGCCTAGAG
TGGCACGAGCCGGCGACCGAGGCGGCCGACGTGGCGGTGCGGGCAGCGGC
AGCAATGGCGGTGGAGCACGGAGAGGCGGCGATGGAGACTGCAGCAGCGG
CGGCCGCAGGAGCGGGCGGCAATGGCGGTGGCGACAGCGACGGCTAGCAG
TAGCGGCGATGGAAGGGGTGGCCCCAGGCATCAAGGAAACCACCCAAAAG
GCGGCTTTCGTCACCGTCACCTCCGACTCGGCTTTAACGCTGCCGGCGGT
GACGCTGCCGGCTTCGACGCTGCCGGAAAGAAGGAGAGCTCCCCGTTTTT
GTTCTTTCTTTTTTAATTGCCCCTGAGGCGATAAATGAGAAAAGGTACGA
CGGTAAAGGATGGGATATTGGAAGCACATACGATCGGCCCTCCAAAGCTG
CTGACCCTTGCATGGCTTTCGAGCAAATAGGGAAGGATTTAGAGATTACC
GGAGGCACGGGCTGGCCCACGAATGCCTGATTCCGAGACTTGCAATTCGT
TCAGGTTTAAAAGGGAAAGTACTTGCGAGCATACTACTAACAAAAGCACA
GTCCTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig806:3979..7136-

>mRNA_P-wetherbeei_contig806.1.1 ID=mRNA_P-wetherbeei_contig806.1.1|Name=mRNA_P-wetherbeei_contig806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1671bp|location=Sequence derived from alignment at P-wetherbeei_contig806:3979..7136- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCTGCGCAGAGCTCTGTGTGCTGCAGCTGGTCGCCGCCCTCTA
CCACCTCCTCGTCGGGAGGCGGGAACTGTGGGAAGAGTGCCTCCACTTCG
CGCTGGAGCTGTTTCGCACTGCGAGGTGGGAGAGCGGCGGCGGCCGGCGG
GGGGCGGCCGACGCCGACGCTGCGGCCGGCGCACCCGCCGTCTGCTCTCC
CGTCTACACCCGCCTCGTGACTACGCTACTCTATTTCCAGCGCGTCGCCG
CGCACCGGAAGGCGTTGTTGTCGGTGCCGCATCCGGTCGTGCGCTGCGCC
GTCCCGCAGGCGGAGATTGCCGCCGCCACGGCCGGCGCCGGCGACGGCAG
CAGCGATGGCGGTGGCAACGGCGAGCGTAGTGATGGCAAGCGCCAAGATG
CTGGCGGTTGCGGTGGCGGCGGCGGCGGCGCCAGAAGCACAGGGAAGGCG
GCTGTACCGGCGGCGGCCACCGTGGCGACAAATGACCAGCACACGGGACT
GCACGCCCGCCCGCGAAGAGCATCCGCCGCGGCGGTGGCCGCTGCCATCG
CCGCGGCCGCCGCCGTCGAAAAAGACGAGGATGACTCGCCGTCTCCGCCG
CACGTCGCCGGGACGCCCTCCGCGTCCCGGCGCCGGCCGCCTTTGTCTAA
CGCCCCACGGTCTGCCACTGCCGGCGGCATCGGGTCCCCGCTGAGCGTGA
TGAAGTGCCTCAACCACGTCGCCGAGCGGCACGCGCCGGTGGTTCTCGGG
CGGCGGCTGGCGGCTGGGCGGCCGGGGCCGCCGGCGTGTACTACCGTCGC
TCCGTCCAGCGACGCATCCCTCGACCGGCCAACTGGCGGCGGTGGCGGCG
GAACCTGCGGCGGGGGGGGAACCGGCAGCAGAGGCGGCGAGAGCGGCGAC
GAAGGCAGTTACGCCAGTTTTGCCATCGGATACAGCAGCAGAGACAGCAG
CTGGAGAGGCGGCGCAGACGAGTGCGGCGGGGGTGGCGGCGGTGGCGGCG
GCGGCGGCTTCGGCGGCGGCTTCGGCGGCGGCGCTTTGTGCGGTACTGTT
ATTGCTCCGGGGCGGATGGTGCCGCCTCGAGGCTACATGGAGAACGTGTT
CGCTCTCGTCGAGTGGTGCTACAACCGCTGCCTCGAGAAGGTGGCGGAAG
GAGGCGTGCTGCTGCTGGTGGAGGCGCTCTCGGCGCGGAATGTCGCGCTC
TTCTGCCAGGACTACTCGGCGGAGCGGGTGCGCCGGGCGGCCTCGGACTG
GGCGGTCGTCATGTCTTTGCTTCGCAGCTGCCCAGGATTGATGGCCATGT
TCCCGCCGTCGTCGCTGCGGGCCAAGGCCCTGGCGACGAGCTGCGCCGGC
GCGCTGAGCCGGGCGGCGTACGAAGATTTCCTCTCATCGTGGAGCCTCTG
CCAGCGCAACACGGGCGGCGCCCTCATTCCGGCCGTCCCCTACGATGAGC
CATTCGCGCCGGAGCTGCTCATCGACCCACGCCTCAACCCCGTCTTCGTG
CGGGTCATTGAGATCTGCCTAGAGTGGCACGAGCCGGCGACCGAGGCGGC
CGACGTGGCGGTGCGGGCAGCGGCAGCAATGGCGGTGGAGCACGGAGAGG
CGGCGATGGAGACTGCAGCAGCGGCGGCCGCAGGAGCGGGCGGCAATGGC
GGTGGCGACAGCGACGGCTAG
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