mRNA_P-wetherbeei_contig8050.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8050.1.1
Unique NamemRNA_P-wetherbeei_contig8050.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 1.150e-102
Identity = 178/286 (62.24%), Postives = 208/286 (72.73%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLGEGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAPRGLPGMPQGPGMYGAMPYMMAAGPGMPGQ 858
            GHFVRR+ RAGQADWTN+YVK LP+ W + KLREEF K GA+TSCK+Q++P  G+       E +           GFGFVNFEEHE AVKA+E  N  ++ +GE  T L+ +RAQKK ER REL  K++ +K+ERMN++QGVN+YVKNLDE VTEDA+REAFAPYGTITSARVM D+S                 QSKGFGFVCFSAPEEATKA+ EMN KML NKPIYVALAQR+EVRR QLEAQ++QRT GM PRG+P  P   GMYG MPY M A PGMP Q
Sbjct:  203 GHFVRRDNRAGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQ-----GDESKEKXXXXXXXXXGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNN--------------NQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYG-MPYWMGAQPGMPQQ 468          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 311 bits (798), Expect = 1.790e-96
Identity = 179/292 (61.30%), Postives = 202/292 (69.18%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKL-GEGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAPRGLPGMPQGPGMYG-AMPYMMAAGPGMPGQRGGM 870
            GHFVRRN+RAGQADWTN+YVKN+P  W EEKLR EFAKFG I S K+Q                   +   +S ++GFGF+NFE+HE A  AV   NG  + G   +  ELF  RAQK+ ERQREL  KYE LKVERMN+YQGVNLYVKNLDE V E ALREAFA  GTITS R+MKD               A+ G SKGFGFVCFS+PEEATKAVQEMNN+M+A+KPIYVALAQRKEVRRAQLEAQY+Q+  G+ PRG  G  Q PGMYG  MPYMM      PGQ GGM
Sbjct:  224 GHFVRRNDRAGQADWTNIYVKNIPLAWDEEKLRSEFAKFGTINSVKIQRE-----------------SSDPASLSRGFGFINFEDHEAAESAVSEMNGKTVSGPAVETRELFCCRAQKRTERQRELQAKYEALKVERMNKYQGVNLYVKNLDEAVDEAALREAFATQGTITSVRIMKD---------------AVTGNSKGFGFVCFSSPEEATKAVQEMNNRMVASKPIYVALAQRKEVRRAQLEAQYAQQRGGLGPRGPMGAMQ-PGMYGMGMPYMM------PGQPGGM 476          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 286 bits (732), Expect = 5.100e-87
Identity = 163/289 (56.40%), Postives = 204/289 (70.59%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLG--EGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAPRGLPGMPQGPGMYGAMP-YMMAAGPGMPGQ 858
            GHFV+R +RA  +DWTN+Y+KN+P +WSEEKL +EF KFG +TS K  +     +P E    EG    K A     G+GFVN+ +HE AVKAVE  NGLKL   +GE+  E++A RAQKK ER+REL  K+E LK ER+N+YQGVNLYVKNLD+ +T++ LRE F  YGTITSARVM+DS+G                 S+GFGFVC+SAPEEATKAV E N K++  KP+Y+ALAQR+EVRRAQLEAQY++   G+ PRG+P + Q PGMYGAMP Y M  G G+P Q
Sbjct:  180 GHFVKRQDRASASDWTNLYIKNIPEDWSEEKLNDEFGKFGEVTSVKAVIKKM--DPVE----EGAPPPKVAG----GYGFVNYADHESAVKAVEAMNGLKLKHPDGEER-EMYAGRAQKKAERERELRAKFESLKAERINKYQGVNLYVKNLDDSITDEGLREEFTAYGTITSARVMRDSNG----------------NSRGFGFVCYSAPEEATKAVSEANGKLINGKPVYIALAQRREVRRAQLEAQYARSVGGLPPRGIP-LGQ-PGMYGAMPMYAMPPGQGIPPQ 439          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: F0YJH2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJH2_AURAN)

HSP 1 Score: 249 bits (637), Expect = 2.320e-73
Identity = 154/304 (50.66%), Postives = 189/304 (62.17%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLGEGED-------MTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTS---------GMAPRGLPG-MPQG--PGMYGA-----MPYMMAAG 840
            GHFVRR ER+GQ+DWTN+YVKN PA+W EE LR+ F  FGAITSCK                       AA++    FG+VNFE H+ AV A++  NG+    G+           LF  RAQKK+ER+REL  K++  K+ER+ +YQGVNL+VKNLD+ + +D LRE FA YGTITSARVM++             PA   G S+GFGFVCFS+PEEA KAV EMNNK++  KPI+VALAQRKEVRRAQLEAQ++QR +          M P G+P   PQG  P   GA     MP M AAG
Sbjct:  173 GHFVRRTERSGQSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKA----------------------AAAADGSAFGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMRE-------------PAT--GTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRRTTAPYGAHPGAMGPAGVPPHAPQGLHPAHLGAPYGTAMPIMYAAG 439          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A067BXY4_SAPPC (Polyadenylate-binding protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BXY4_SAPPC)

HSP 1 Score: 248 bits (632), Expect = 1.820e-72
Identity = 151/290 (52.07%), Postives = 187/290 (64.48%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLGE--GEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQ-RTSGMAP-RGLPGMPQGPGMYGAMPYMMAAGPGMPGQ 858
            GHF +R +R   ADWTN YVKN+P  W +  LR+EF  FG+ITSC +            A++EG           +GFGFVNF+E E A KAVE  N   +G+  G D+  L+  +AQK+ ER+REL  K+E LK+ER+N+YQGVNLYVKNLD+++ +D LREAF   GTITS R+MKD SG                 S+GFGFVCF+ PEEATKAV +MN K+++ KPIYVALAQRKEVRRAQLEAQ++Q R SGM   RG+P   Q P MYGA P   A    MP Q
Sbjct:  193 GHFQKRQDRPDLADWTNCYVKNIPHNWDDATLRKEFEVFGSITSCVVMKD---------ASSEGN----------RGFGFVNFDEPESAQKAVEALNDKVVGQEDGADIA-LYVGKAQKRSERERELRNKFEALKMERINKYQGVNLYVKNLDDQLNDDELREAFTTCGTITSCRIMKDPSG----------------NSRGFGFVCFATPEEATKAVTDMNGKLVSGKPIYVALAQRKEVRRAQLEAQHAQQRASGMVVGRGMP--MQQPPMYGAAPMFYAQPNQMPPQ 444          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 247 bits (630), Expect = 4.060e-72
Identity = 144/280 (51.43%), Postives = 186/280 (66.43%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNG--LKLGEGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAPRGLPGMPQGPGMYGAMPYMMA 834
            GHF +R ER    +WTN YVKN+P  W+EE++R+EF  FG + S  +                      A +   KGFGFVNFE+ EGA KAVE  NG   K  +G D+ EL+  RAQK+ ER+REL  K+E LK+ER+++YQGVNLYVKNLD+++T++ LREAF  +GTITS+R+M+D++G                 S+GFGFVCFS PEEA KAV EMN K+++ KP+YVALAQRKEVRRAQLEAQ++QR +G+  RG+P M Q P MYGA P   A
Sbjct:  189 GHFQKRQERPDVDEWTNCYVKNIPQXWTEEEMRKEFEPFGTVVSLVVMKD-------------------AGAEHHKGFGFVNFEKSEGAHKAVEALNGKVYKNPDGSDV-ELYVGRAQKRSERERELRNKFEQLKMERLSKYQGVNLYVKNLDDQLTDEELREAFGSFGTITSSRIMRDTAG----------------VSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQR-AGLMGRGIP-MGQPP-MYGAAPMFYA 429          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A1E7FQC9_9STRA (Polyadenylate-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQC9_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.100e-71
Identity = 150/295 (50.85%), Postives = 192/295 (65.08%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLG---EGEDMT-ELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAPRGLPGMPQGPGMYGAMPYMMAAGPGMPG--QRGG 867
            GHF+ RN+R GQ D+TN YVKN+P +W +E+L +EFA+FG I S              AA T+ +        ++ GFGFVNF EHE A  +VE  NG       +GE++  E+F  RAQKK ER RE+  K+E  K++R++++QGVNLYVKNL++ VT+D LR+ FA  GTITSAR+MKD                  G+S+GFGFVCFS+PEEAT+AV EMN K++ANKPI+VALAQR+EVRRAQLEAQ++ R  G    G PGM +GP M G M Y     PGMP   QRGG
Sbjct:  175 GHFIGRNQRPGQDDFTNCYVKNIPLDWDDERLNKEFAQFGEIAS--------------AAETDDK------KIESLGFGFVNFVEHESAAASVEALNGKNYTHTIDGEEVEREMFVGRAQKKAERDREMRSKHEAEKMDRISKFQGVNLYVKNLEDVVTDDMLRDEFAAMGTITSARIMKDMG--------------KDGRSRGFGFVCFSSPEEATRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQHANRNVGPGGPGQPGMMRGP-MGGPMGY-----PGMPMYMQRGG 429          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A7S3LEE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEE9_9STRA)

HSP 1 Score: 242 bits (617), Expect = 2.610e-71
Identity = 154/316 (48.73%), Postives = 195/316 (61.71%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAK--GFGFVNFEEHEGAVKAVEHFNGLKLG---EGEDMTE-LFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQR----TSGM--APRG----LPGMPQ-------GPGMYGAMPYMMAAGPGMPGQRGGMTAQ 879
            G F+RRN+R     WTN YVKN+P EW++++L +EFA+FG I S  +       +  E    EGE  AK  S + +  GFGFVNF EHE A  AVE  NG +     +GE+  + L+  RAQKK ER+REL  K+E  K++R++++QGVNLYVKNLD+ VT+D LR+ F   GTITSARVMKD                  G+S+GFGFVCFS PEEAT+AV EMN K+LA KP++VA+AQR++VRRAQLEAQ++ R      GM  AP G     PG+P        G GM  A P MM   P M G RGG   Q
Sbjct:  199 GQFMRRNDRPDVNSWTNCYVKNIPLEWNDDRLNKEFAQFGEIVSATVAKGVKKNKKKEEPPAEGEEPAKEESEEPQSLGFGFVNFLEHEAAAAAVEQLNGKEYTTTVDGEETQQALYVGRAQKKAERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFTSMGTITSARVMKD---------------VKDGRSRGFGFVCFSTPEEATRAVNEMNGKLLAGKPVFVAVAQRRDVRRAQLEAQHANRGPPGQMGMMRAPMGGPMQYPGVPMYMQRPGPGAGMQPAYPTMM---PQMMGGRGGAVPQ 496          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 243 bits (620), Expect = 1.250e-70
Identity = 146/289 (50.52%), Postives = 185/289 (64.01%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNG--LKLGEGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQRTSGMAP-RGLPGMPQGPGMYGAMPYMMAAGPGMPGQ 858
            GHF +R +R    DWTN YVKN+P++WS+E L +EF  FG + S  +                      A +   +GFGFVNFEE EGA KAVE  NG   +  +G D+ EL+  +AQK+ ER+REL  K+E LK+ER+N+YQGVNLYVKNLD+++ +D LREAFA  GTITS+RVM+D +G                 S+GFGFVCFS PEEA KAV EMN K+++ KP+YVALAQRKEVRRAQLEAQ++ + +G+   RGLP M Q P MYGA P        MP Q
Sbjct:  194 GHFQKRQDRPDIDDWTNCYVKNIPSQWSDEDLLKEFKPFGPVLSAVIMRD-------------------ADAELNRGFGFVNFEESEGAHKAVEALNGKVYQTADGSDL-ELYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLNDDELREAFASAGTITSSRVMRDQNG----------------NSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAHQRAGLVVGRGLP-MGQPP-MYGAAPMFYTQPNQMPPQ 444          
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Match: A0A6G0WN78_9STRA (Polyadenylate-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.890e-70
Identity = 149/290 (51.38%), Postives = 187/290 (64.48%), Query Frame = 1
Query:    1 GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLSPPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLKLGEGEDMTE--LFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNLDEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKGFGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQ-RTSGMAP-RGLPGMPQGPGMYGAMPYMMAAGPGMPGQ 858
            GHF +R +R    +WTN YVKN+P  W +  LR+EF  FGAI+SC +                      A+S + +GFGFVNFEE E A +A E  N  K+   ED  E  L+  +AQK+ ER+REL  K+E LK+ER+N+YQGVNLYVKNLD+++T++ LREAFAP GTITS R+M+D             PA   G S+GFGFVCF+ PEEATKAV EM+ K+++ KPIYVALAQRKEVRRAQLEAQ++Q R +GM   RG+P   Q P MYGA P   A    MP Q
Sbjct:  235 GHFQKRQDRPDSENWTNCYVKNIPQTWDDVTLRKEFEPFGAISSCVVMKD-------------------ASSEQNRGFGFVNFEEPEAAREACEKLNN-KVVSTEDGVEIELYVGKAQKRSERERELRHKFEALKMERINKYQGVNLYVKNLDDQLTDEELREAFAPVGTITSCRIMRD-------------PA---GNSRGFGFVCFATPEEATKAVTEMSGKLISGKPIYVALAQRKEVRRAQLEAQHAQQRATGMVVGRGMP--MQQPPMYGAAPMFYAQPNQMPPQ 486          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8050.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI1.150e-10262.24Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA1.790e-9661.30Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A7S2V0G2_9STRA5.100e-8756.40Polyadenylate-binding protein n=2 Tax=Fibrocapsa j... [more]
F0YJH2_AURAN2.320e-7350.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A067BXY4_SAPPC1.820e-7252.07Polyadenylate-binding protein n=4 Tax=Saprolegniac... [more]
A0A2D4BDJ5_PYTIN4.060e-7251.43Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
A0A1E7FQC9_9STRA2.100e-7150.85Polyadenylate-binding protein n=1 Tax=Fragilariops... [more]
A0A7S3LEE9_9STRA2.610e-7148.73Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
K3X8Z0_GLOUD1.250e-7050.52Polyadenylate-binding protein n=2 Tax=Pythiaceae T... [more]
A0A6G0WN78_9STRA2.890e-7051.38Polyadenylate-binding protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8050contigP-wetherbeei_contig8050:190..2909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTD5
Preferred namePAB1
PFAMsPABP,RRM_1
Model size1242
Max annot lvl2759|Eukaryota
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
Exons6
Evalue1.89e-103
EggNOG OGsKOG0123@1|root,KOG0123@2759|Eukaryota
Ec32 ortholog descriptionpoly(A) binding protein
Ec32 orthologEc-02_005930.1
DescriptionRNA binding
Cds size1242
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8050.1.1prot_P-wetherbeei_contig8050.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8050 190..2909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.4375637-CDS-P-wetherbeei_contig8050:189..6361683187017.4375637-CDS-P-wetherbeei_contig8050:189..636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 190..636 -
1683187017.4548542-CDS-P-wetherbeei_contig8050:993..11221683187017.4548542-CDS-P-wetherbeei_contig8050:993..1122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 994..1122 -
1683187017.4678082-CDS-P-wetherbeei_contig8050:1336..15791683187017.4678082-CDS-P-wetherbeei_contig8050:1336..1579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 1337..1579 -
1683187017.4792297-CDS-P-wetherbeei_contig8050:1930..20531683187017.4792297-CDS-P-wetherbeei_contig8050:1930..2053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 1931..2053 -
1683187017.4892733-CDS-P-wetherbeei_contig8050:2306..24751683187017.4892733-CDS-P-wetherbeei_contig8050:2306..2475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 2307..2475 -
1683187017.4996552-CDS-P-wetherbeei_contig8050:2778..29091683187017.4996552-CDS-P-wetherbeei_contig8050:2778..2909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8050 2779..2909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8050.1.1

>prot_P-wetherbeei_contig8050.1.1 ID=prot_P-wetherbeei_contig8050.1.1|Name=mRNA_P-wetherbeei_contig8050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=414bp
GHFVRRNERAGQADWTNVYVKNLPAEWSEEKLREEFAKFGAITSCKLQLS
PPPGEPPEAAATEGEGTAKAASSKAKGFGFVNFEEHEGAVKAVEHFNGLK
LGEGEDMTELFASRAQKKVERQRELTQKYELLKVERMNRYQGVNLYVKNL
DEEVTEDALREAFAPYGTITSARVMKDSSGGAAAAGGVAAPAALPGQSKG
FGFVCFSAPEEATKAVQEMNNKMLANKPIYVALAQRKEVRRAQLEAQYSQ
RTSGMAPRGLPGMPQGPGMYGAMPYMMAAGPGMPGQRGGMTAQPPYPMMP
QQMMAGPRGAMAARGPMPGAYGGRGTYPMPAYAAMAPVPGMGAAAPRRGG
GNPGGAGSGVGGAGGVPAGGPGGVPGQPGGPRQRQGQPGGPQGQPVVPTA
RQQQQAAQQQQQAA
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mRNA from alignment at P-wetherbeei_contig8050:190..2909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8050.1.1 ID=mRNA_P-wetherbeei_contig8050.1.1|Name=mRNA_P-wetherbeei_contig8050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2720bp|location=Sequence derived from alignment at P-wetherbeei_contig8050:190..2909- (Phaeothamnion wetherbeei SAG_119_79)
GGTCACTTCGTGCGGCGCAACGAGCGCGCGGGACAGGCGGACTGGACGAA CGTCTACGTTAAGAACCTGCCAGCCGAGTGGTCCGAGGAGAAGCTGCGGG AAGAGTTTGCCAAGTTCGGTGCCATCACCAGGTGACCGACGGACTGAAGG CGTTGGGTATTGATTCCAGATGAGGGAGGGAGGAAAGTGGGAGAGAAGTG CGGAGCGGGCGGTGACGGTTTGGCGGCGGTGGTGGCTGTCGCACAAATAT TAGAGAGCGGATTGCAGGGGTGGGTCTGCAGCGTCGGTTACGTCTTGCGG TCTTTCCGCGTTCCCTGTCGTGCCGCTCTTACTGCTGCGGGGTGATCCCA ACTGGCGAAAACCCTTCGCTGACTCTTTCTCCTGCCGCCGCCGCCCCTTT CTTGGCTTTGATCTGCCGATTTGCCGCGCCGTAGCTGTAAGCTCCAGCTG TCACCGCCGCCCGGGGAGCCCCCGGAGGCCGCCGCGACGGAGGGGGAGGG TACCGCCAAGGCGGCCTCGAGCAAGGCGAAAGGCTTCGGCTTCGTCAACT TTGAGGAGCACGAGGGGGCGGTCAAGGCGGTCGAGCATTTCAACGGCCTC AAGGTCTGGTACCATTGCTGTTTGTTATGGCGTGTCAGCGGCCTATGGTT CCGACCTTTAGTAGATACCGTGTTTCTGTTTACTGTTCCACTGGCCGCCA AGCAAGCCGGAGTCGTTTTGCGGCGGTTGCGCTGGCGTTTCTGCCTGGTC GGTGCTGCGGCGGAAGCCTCCTCTTTTGTTCTTACCCGTTCCTGCCGCTC CGTGTGACGTGTGAAACCCATCCGGAACGTGACTGTGAACGTCCGCTCTT CACCAGCTGGGCGAGGGGGAGGACATGACGGAGCTGTTCGCGTCGCGGGC GCAGAAGAAGGTGGAGCGCCAGCGGGAACTCACGCAGAAGTACGAGCTGC TCAAGGTCGAGCGCATGAATCGCTACCAGGTAACGTCTTCCGACTAGTAA CGGTTTTCTTTTGGCTTTACTCTTTGTGTTTCGTGTAGCCTTTTGTGTGG CCAGGAAGCCCGGGCGAATGGTGCCGTGTGTGGAGGGGGAGAAGAGGGCA AGACGGAAGCGGCAGGAAACGGTTTCAACTCCAGCAGATTTCGAAACCGT GGATCCCAATTTGTGAGTACTGGCGGCTGATGTACGACGCTCCTGCCGCT ATCCCATCTCTCTCTTTTCCGCCGTCGTCGCCGCTGCCGCGGTCGTCGCT GCCAACGCCTTAACGTTTCCCGCGTTCCCCGTCTGTCCGGCTTTCCGATA TTCCTGCCTCTTGAAACCTCCACCCACCAGGGCGTCAACCTGTACGTGAA GAACCTCGACGAAGAGGTGACGGAGGACGCCCTCCGCGAGGCCTTCGCGC CCTACGGCACCATCACCTCGGCGCGTGTCATGAAGGACTCTTCGGGCGGC GCGGCGGCTGCCGGCGGGGTGGCGGCGCCGGCGGCGCTGCCGGGGCAGTC CAAGGGGTTCGGGTTCGTGTGCTTCTCTGCCCCGGAGGAGGCCACCAAGG CCGTGCAGGAGATGAACAACAAGGTGCATGCGGCTGTTCGAGAGCTGGTA GTTTTGGGGCGCTCTGGAAGAATTGGAAGACTGCTGGTGTGGGGTGTTAC CGCTTATAAGCTCTGCTGATTTCCTTCACTTTGTCGTATTCCGTTTCCTC TGATCTCCCTCGAGGTTTCAGATCGCCTCGTTCAACTTCCCTCCTATCCT TTTTGTAACTGCCTGTCCGTGGGGGTTGGCACGACAGATGCTGGCCAACA AGCCCATCTACGTTGCTCTGGCGCAGCGAAAGGAGGTGCGGCGCGCGCAG CTCGAGGCGCAGTACTCGCAGCGCACAAGCGGCATGGCGCCCCGGGGGCT CCCCGGCATGCCTCAGGTACGGACTGGAACGGTTATGATCTGAGTGGGCT GAAAGGGACAGGAAAGAAATGATTCTTTCTGGCACACTGCAGCCTGCCGA TCGCGTTGTTATGGGGGAAGCAGTTTGATTTGGGTTACCTTGCCGGGGCA CGTTGAGAGCTGAGCATGCTGGCAGTGGAGGTGCCCAGACCGCATGAGAA CGGACCGTCTTTCACTCTACTTTACGGGTGGATTAGAGCATCTTTTGATT GTCTTTAAGAACAGTGTGTCAAACGGACGATTACCCGCATCGTGAGCTTC TCTTTTGGTCCTGTTGTCGGTTCTCTATGGCAATTGCATAACAATCTCTA ACCCCCCTTTCTCGCTCGCGCAGGGGCCGGGCATGTATGGCGCGATGCCA TACATGATGGCGGCAGGGCCCGGCATGCCCGGGCAGCGAGGCGGCATGAC GGCGCAGCCGCCGTACCCGATGATGCCCCAGCAGATGATGGCCGGTCCGC GGGGCGCCATGGCGGCCCGTGGCCCCATGCCGGGCGCATACGGCGGCCGG GGTACGTACCCAATGCCCGCCTACGCGGCGATGGCGCCAGTGCCGGGCAT GGGAGCGGCGGCGCCGCGCCGCGGGGGCGGCAACCCCGGCGGTGCCGGCA GTGGCGTCGGTGGGGCCGGCGGCGTGCCCGCGGGGGGCCCCGGGGGCGTG CCCGGGCAGCCGGGCGGGCCGCGGCAACGGCAGGGGCAGCCGGGGGGCCC GCAGGGGCAGCCGGTGGTGCCGACGGCGCGGCAGCAGCAACAGGCAGCGC AGCAGCAGCAGCAGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8050:190..2909-

>mRNA_P-wetherbeei_contig8050.1.1 ID=mRNA_P-wetherbeei_contig8050.1.1|Name=mRNA_P-wetherbeei_contig8050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1242bp|location=Sequence derived from alignment at P-wetherbeei_contig8050:190..2909- (Phaeothamnion wetherbeei SAG_119_79)
GGTCACTTCGTGCGGCGCAACGAGCGCGCGGGACAGGCGGACTGGACGAA
CGTCTACGTTAAGAACCTGCCAGCCGAGTGGTCCGAGGAGAAGCTGCGGG
AAGAGTTTGCCAAGTTCGGTGCCATCACCAGCTGTAAGCTCCAGCTGTCA
CCGCCGCCCGGGGAGCCCCCGGAGGCCGCCGCGACGGAGGGGGAGGGTAC
CGCCAAGGCGGCCTCGAGCAAGGCGAAAGGCTTCGGCTTCGTCAACTTTG
AGGAGCACGAGGGGGCGGTCAAGGCGGTCGAGCATTTCAACGGCCTCAAG
CTGGGCGAGGGGGAGGACATGACGGAGCTGTTCGCGTCGCGGGCGCAGAA
GAAGGTGGAGCGCCAGCGGGAACTCACGCAGAAGTACGAGCTGCTCAAGG
TCGAGCGCATGAATCGCTACCAGGGCGTCAACCTGTACGTGAAGAACCTC
GACGAAGAGGTGACGGAGGACGCCCTCCGCGAGGCCTTCGCGCCCTACGG
CACCATCACCTCGGCGCGTGTCATGAAGGACTCTTCGGGCGGCGCGGCGG
CTGCCGGCGGGGTGGCGGCGCCGGCGGCGCTGCCGGGGCAGTCCAAGGGG
TTCGGGTTCGTGTGCTTCTCTGCCCCGGAGGAGGCCACCAAGGCCGTGCA
GGAGATGAACAACAAGATGCTGGCCAACAAGCCCATCTACGTTGCTCTGG
CGCAGCGAAAGGAGGTGCGGCGCGCGCAGCTCGAGGCGCAGTACTCGCAG
CGCACAAGCGGCATGGCGCCCCGGGGGCTCCCCGGCATGCCTCAGGGGCC
GGGCATGTATGGCGCGATGCCATACATGATGGCGGCAGGGCCCGGCATGC
CCGGGCAGCGAGGCGGCATGACGGCGCAGCCGCCGTACCCGATGATGCCC
CAGCAGATGATGGCCGGTCCGCGGGGCGCCATGGCGGCCCGTGGCCCCAT
GCCGGGCGCATACGGCGGCCGGGGTACGTACCCAATGCCCGCCTACGCGG
CGATGGCGCCAGTGCCGGGCATGGGAGCGGCGGCGCCGCGCCGCGGGGGC
GGCAACCCCGGCGGTGCCGGCAGTGGCGTCGGTGGGGCCGGCGGCGTGCC
CGCGGGGGGCCCCGGGGGCGTGCCCGGGCAGCCGGGCGGGCCGCGGCAAC
GGCAGGGGCAGCCGGGGGGCCCGCAGGGGCAGCCGGTGGTGCCGACGGCG
CGGCAGCAGCAACAGGCAGCGCAGCAGCAGCAGCAGGCGGCG
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