mRNA_P-wetherbeei_contig8033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8033.1.1
Unique NamemRNA_P-wetherbeei_contig8033.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A2E3BWE8_9FLAO (Peptidase S74 domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E3BWE8_9FLAO)

HSP 1 Score: 63.5 bits (153), Expect = 4.600e-10
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 SAVQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALK 192
            S  ++G LAQD+ +VFPELV + GD    +++NY G  PIL++A+ EQ + ++ LQ ++ + K
Sbjct: 1040 SIEKIGLLAQDIQKVFPELVKESGDEDGTLSINYQGLIPILINAIKEQQKELQKLQKEILSKK 1102          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A2E3Y0V2_9FLAO (Peptidase S74 domain-containing protein n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E3Y0V2_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 1.610e-9
Identity = 26/71 (36.62%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 SAVQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALKLVVGAQRE 216
            ++ Q+GF+AQD+++++PE+V +  DG  Y+ V+YP   PILV+A+ EQ+  I+ L+ ++  +K ++  + E
Sbjct: 1004 TSKQIGFIAQDLMKIYPEIVTEGKDG--YLKVDYPKLTPILVEAIKEQNSEIKSLKKELNEIKSILNLETE 1072          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A316JR36_9FLAO (Peptidase S74 domain-containing protein n=1 Tax=Fluviicola sp. XM-24bin1 TaxID=2133950 RepID=A0A316JR36_9FLAO)

HSP 1 Score: 61.6 bits (148), Expect = 2.130e-9
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   13 QLGFLAQDVLRVFPELVHQQ------GDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALKL 195
            Q G +AQDV +VFPE+VH++      GD   YM VNY    P+L++++ E + +IE L+A+V  LK+
Sbjct:  397 QYGVMAQDVQKVFPEMVHEKAVFNNAGDDTVYMTVNYDQLIPVLIESIRELNAKIEALEAEVEVLKV 463          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: UPI0019AAA90E (Uncharacterized protein n=2 Tax=Roseivirga thermotolerans TaxID=1758176 RepID=UPI0019AAA90E)

HSP 1 Score: 61.6 bits (148), Expect = 2.200e-9
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   10 VQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALK 192
            +Q+GF+AQDV ++FP+LV  + D   Y+++NY    P+LV+A+ EQ  +IE LQ +V AL+
Sbjct: 1220 LQIGFIAQDVQKIFPQLV--EADEHGYLSLNYAQLTPVLVEAMKEQQTQIESLQKEVEALR 1278          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: UPI00178C4A62 (tail fiber domain-containing protein n=1 Tax=Rufibacter sp. LB8 TaxID=2777781 RepID=UPI00178C4A62)

HSP 1 Score: 60.8 bits (146), Expect = 3.880e-9
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   13 QLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALK 192
            QLGF+AQD+ ++ P+LV    DG  Y++VNY G  P+LV+ + EQ  +IE LQ  VA L+
Sbjct:  218 QLGFIAQDMQKILPDLVEADADG--YLSVNYIGIIPVLVEGLKEQQAQIETLQKTVAKLE 275          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A2E1N2R1_9FLAO (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E1N2R1_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 3.980e-9
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 SAVQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQ 171
            S  ++G LAQ++ ++FPELV Q  D    ++VNY G  PIL++A+ EQ ++I DL+
Sbjct:   97 SVEKIGLLAQEIQKIFPELVKQAEDDEGTLSVNYQGLIPILINAIKEQQKQIRDLK 152          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A349E0J7_9BACT (Peptidase S74 domain-containing protein n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A349E0J7_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.020e-9
Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   16 LGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALKLVV 201
            +GF+AQ++ +++P+LV +  DG  ++++NY G  PI+V+A  +Q +RIEDLQ  VA L  +V
Sbjct:  493 IGFIAQEMKKLYPDLVSENQDG--HLSINYTGLIPIIVEANKQQQQRIEDLQTQVANLTAIV 552          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A431U0T4_9BACT (Tail fiber domain-containing protein n=2 Tax=Hymenobacter gummosus TaxID=1776032 RepID=A0A431U0T4_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.040e-9
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   13 QLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAA 186
            QLGFLAQ++ +V+PELV    DG    AVNY    P+LV+A+ EQ R+IE L+A+VAA
Sbjct:  547 QLGFLAQELEQVYPELVSTGPDG--LKAVNYAQLTPVLVEALKEQQRQIEQLRAEVAA 602          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: M4VI95_9PROT (Outer membrane protein n=2 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=M4VI95_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 4.110e-9
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   10 VQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAALK 192
            ++ GF AQDV +++P+LVHQ  D    +++NY G    LV+A+ EQ + IE L+ ++ ALK
Sbjct: 1183 IEYGFSAQDVQKIYPDLVHQADDADGTLSMNYTGLIAPLVEAIKEQQKEIETLKNEIEALK 1243          
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Match: A0A3M1JJW0_9BACT (Peptidase S74 domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3M1JJW0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 5.280e-9
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 SAVQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQSRRIEDLQADVAAL 189
            +   LGF+AQ++ RV PELV +  DG  Y +V Y G  PILV+AV EQ ++IE LQA   AL
Sbjct:  299 AKTHLGFVAQEIERVLPELVSEGSDG--YKSVTYNGIMPILVEAVKEQQQQIETLQAQNEAL 358          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3BWE8_9FLAO4.600e-1041.27Peptidase S74 domain-containing protein n=1 Tax=Fl... [more]
A0A2E3Y0V2_9FLAO1.610e-936.62Peptidase S74 domain-containing protein n=1 Tax=Cr... [more]
A0A316JR36_9FLAO2.130e-943.28Peptidase S74 domain-containing protein n=1 Tax=Fl... [more]
UPI0019AAA90E2.200e-945.90Uncharacterized protein n=2 Tax=Roseivirga thermot... [more]
UPI00178C4A623.880e-948.33tail fiber domain-containing protein n=1 Tax=Rufib... [more]
A0A2E1N2R1_9FLAO3.980e-944.64Peptidase S74 domain-containing protein (Fragment)... [more]
A0A349E0J7_9BACT4.020e-943.55Peptidase S74 domain-containing protein n=1 Tax=Mi... [more]
A0A431U0T4_9BACT4.040e-955.17Tail fiber domain-containing protein n=2 Tax=Hymen... [more]
M4VI95_9PROT4.110e-942.62Outer membrane protein n=2 Tax=Micavibrio aerugino... [more]
A0A3M1JJW0_9BACT5.280e-951.61Peptidase S74 domain-containing protein (Fragment)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8033contigP-wetherbeei_contig8033:2684..2899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog313606.M23134_01846
PFAMsPeptidase_S74
Model size216
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.96e-10
EggNOG OGsCOG2911@1|root,COG2911@2|Bacteria,4PKFD@976|Bacteroidetes,47S1V@768503|Cytophagia
DescriptionChaperone of endosialidase
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.7248566-CDS-P-wetherbeei_contig8033:2683..28991683187016.7248566-CDS-P-wetherbeei_contig8033:2683..2899Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8033 2684..2899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8033.1.1prot_P-wetherbeei_contig8033.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8033 2684..2899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8033.1.1

>prot_P-wetherbeei_contig8033.1.1 ID=prot_P-wetherbeei_contig8033.1.1|Name=mRNA_P-wetherbeei_contig8033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
GSAVQLGFLAQDVLRVFPELVHQQGDGGAYMAVNYPGFAPILVDAVNEQS
RRIEDLQADVAALKLVVGAQRE
back to top

mRNA from alignment at P-wetherbeei_contig8033:2684..2899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8033.1.1 ID=mRNA_P-wetherbeei_contig8033.1.1|Name=mRNA_P-wetherbeei_contig8033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig8033:2684..2899- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCGGTGCAGCTGGGCTTCCTGGCTCAAGACGTGCTGCGGGTCTT TCCTGAGCTGGTGCACCAGCAGGGCGACGGCGGTGCATACATGGCTGTAA ACTACCCGGGGTTTGCCCCCATTCTGGTGGACGCGGTCAACGAGCAGAGC CGCAGAATAGAAGACCTGCAGGCAGATGTGGCGGCCCTGAAGCTGGTCGT CGGCGCCCAGCGAGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8033:2684..2899-

>mRNA_P-wetherbeei_contig8033.1.1 ID=mRNA_P-wetherbeei_contig8033.1.1|Name=mRNA_P-wetherbeei_contig8033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig8033:2684..2899- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCGGTGCAGCTGGGCTTCCTGGCTCAAGACGTGCTGCGGGTCTT
TCCTGAGCTGGTGCACCAGCAGGGCGACGGCGGTGCATACATGGCTGTAA
ACTACCCGGGGTTTGCCCCCATTCTGGTGGACGCGGTCAACGAGCAGAGC
CGCAGAATAGAAGACCTGCAGGCAGATGTGGCGGCCCTGAAGCTGGTCGT
CGGCGCCCAGCGAGAA
back to top