mRNA_P-wetherbeei_contig8026.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8026.1.1
Unique NamemRNA_P-wetherbeei_contig8026.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: D8LSZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-15
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = 3 
Query:   57 TWSETRDIMES-LEALYSDGADVAEANKVRALHSEAEREAARRAADARHIIKEITARVAHKEAALSWPLKDELAANCKRLQEEAEVLRDGLERSVAVAAHEEAALAATRSKVDAADAAILDAASQHATDMPRVQNAISLYANVSGIRWHYDCDPEHLAGWISAPESDA----------VQAFVFDLVSEDRFSIANRLWSLMD 632
            T  E RDI+ + +  +Y   A V +  +V  L +  E E  RR  DAR +I++    +  +  A+  P +    A  + ++ E       ++     AA  E  +   + +V+     I +    H  +MPRVQNAI LY N++ I+W+Y+ + E +AGW+  PE+            V+ F FD   +D F +AN+LW ++D
Sbjct:    8 TLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMDARAMIRDTIDVLEQRHRAIVEPSEQAFVARIRVVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVID 210
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: W7U4A7_9STRA (Kinetochore protein Spc24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4A7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.610e-13
Identity = 65/203 (32.02%), Postives = 100/203 (49.26%), Query Frame = 3 
Query:   45 MVQLTWSETRDIMESLEALYSDGADVAEANKVRALHSEAEREAARRAADARHIIKEITARVAHKEAAL-SWPLKDELAANCKRLQE----EAEVLRDGLERSVAVAAHEEAALAATRSKVDAADAAILDAASQHATDMPRVQNAISLYANVSGIRWHYDC-DPEHLA-GWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMD 632
            M Q+TW ETR IM  ++ L++   D     ++R L  E +     R A A   I+ +TA V   +AA+ + P  +E   + K   E    E E     + + +A        +     +V+     I  A+   A   PRV +A+SLYAN++GIRW YD  +  HL  G++S PE + V+ F  D   E  F IAN +W+++D
Sbjct:    1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQA---PRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMID 200
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: A0A7S4N5F9_9STRA (Kinetochore protein Spc24 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5F9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.940e-9
Identity = 67/209 (32.06%), Postives = 99/209 (47.37%), Query Frame = 3 
Query:   27 PQREQTMVQLTWSETRDIMESLEALYSDGADVAEANKVRALHSEAEREAARRAADARHIIKEITARVAHKEAALSWPLKDELA---ANCKRLQEEAEVLR---DGLERSVA-VAAHEEAALAATRSKVDAADAAILDAASQHATDMPRVQNAISLYANVSGIRWHYDCDPEHLAGWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMD 632
            P   +T  +L W+ET+ ++  L A Y    D A A K    + E E      AA++  +  E+  R+  + A L+     ELA   A    L+ EAE LR   D LE+  A V    E         V+  D   L    +   ++ +++  ISLYAN+SGI+W YD + E L G ++ P  +  + F  D +  D F +AN LW LMD
Sbjct:   65 PATPRTAARLQWNETKKLILDLAAEYGASGDDAAAEKCLEANRELEDVQREIAAESSPVKSELRDRIDEERAVLA-ERNSELASVDALVSDLRSEAEALRRRNDSLEKERAEVLRRMERYRXXXXXXVEEVDEVEL----RQRREVRKIKYQISLYANISGIKWDYD-EGEILKGEVNVPSKNQTRRFCIDPLDYDEFDVANALWDLMD 267
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: A0A7S4C342_CHRCT (Kinetochore protein Spc24 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C342_CHRCT)

HSP 1 Score: 60.8 bits (146), Expect = 2.860e-7
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:  426 QHATDMPRVQNAISLYANVSGIRWHYDCDPEHLAGWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMD 632
            Q + ++PR ++ ISLYAN+S IRW Y  D   + G++++ + D ++AF  D      + I N LW LMD
Sbjct:  125 QESVEVPRARHTISLYANISAIRWDYGSDK--IKGFVTSAKGDGMKAFELDPTQHSSYDITNSLWDLMD 191
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: A0A7S3ETS2_9EUKA (Kinetochore protein Spc24 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ETS2_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 9.770e-7
Identity = 37/124 (29.84%), Postives = 62/124 (50.00%), Query Frame = 3 
Query:  261 KDELAANCKRLQEEAEVLRDGLERSVAVAAHEEAALAATRSKVDAADAAILDAASQHATDMPRVQNAISLYANVSGIRWHYDCDPEHLAGWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMD 632
            KD +  N KR+++E     DGL   V  A  +   L +   ++            Q + ++PR ++ ISLYAN+S +RW Y    E++ GW+++   + ++AF  D      F + N LW LM+
Sbjct:  104 KDRVHDNIKRMRQET----DGLREQVHCAESKARELVSREQQIK----------QQESVEVPRARHTISLYANISSLRWDYSS--ENVKGWVTSASGNGLRAFELDPSQHSDFFMTNCLWDLME 211
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BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Match: UPI001CF29B37 (kinetochore protein Spc24-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF29B37)

HSP 1 Score: 54.7 bits (130), Expect = 3.550e-5
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 3 
Query:  441 MPRVQNAISLYANVSGIRWHYDCDPEHLAGWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMDE 635
            +P+ +   SLY N+S IRW Y+C+ +H+ G+++    + V+ F  +      + IANRLW +MD+
Sbjct:  127 LPKKRYIFSLYTNISHIRWDYECEEDHVKGFMA--NLNDVKPFCLNKSENSAYDIANRLWDIMDD 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8026.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSZ0_ECTSI1.080e-1529.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U4A7_9STRA1.610e-1332.02Kinetochore protein Spc24 n=2 Tax=Monodopsidaceae ... [more]
A0A7S4N5F9_9STRA6.940e-932.06Kinetochore protein Spc24 n=1 Tax=Odontella aurita... [more]
A0A7S4C342_CHRCT2.860e-739.13Kinetochore protein Spc24 n=1 Tax=Chrysotila carte... [more]
A0A7S3ETS2_9EUKA9.770e-729.84Kinetochore protein Spc24 n=1 Tax=Haptolina ericin... [more]
UPI001CF29B373.550e-535.38kinetochore protein Spc24-like n=3 Tax=Acropora Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8026contigP-wetherbeei_contig8026:1210..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.5376
Model size1140
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.6e-07
EggNOG OGs2A6TR@1|root,2RYCK@2759|Eukaryota,3QEGR@4776|Peronosporales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001940.1
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.5478716-UTR-P-wetherbeei_contig8026:1209..16511683187016.5478716-UTR-P-wetherbeei_contig8026:1209..1651Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8026 1210..1651 -
1683187016.589144-UTR-P-wetherbeei_contig8026:2700..27441683187016.589144-UTR-P-wetherbeei_contig8026:2700..2744Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8026 2701..2744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.5597079-CDS-P-wetherbeei_contig8026:1651..18171683187016.5597079-CDS-P-wetherbeei_contig8026:1651..1817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8026 1652..1817 -
1683187016.5697002-CDS-P-wetherbeei_contig8026:2058..23801683187016.5697002-CDS-P-wetherbeei_contig8026:2058..2380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8026 2059..2380 -
1683187016.5793626-CDS-P-wetherbeei_contig8026:2534..27001683187016.5793626-CDS-P-wetherbeei_contig8026:2534..2700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8026 2535..2700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8026.1.1prot_P-wetherbeei_contig8026.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8026 1652..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8026.1.1

>prot_P-wetherbeei_contig8026.1.1 ID=prot_P-wetherbeei_contig8026.1.1|Name=mRNA_P-wetherbeei_contig8026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MVQLTWSETRDIMESLEALYSDGADVAEANKVRALHSEAEREAARRAADA
RHIIKEITARVAHKEAALSWPLKDELAANCKRLQEEAEVLRDGLERSVAV
AAHEEAALAATRSKVDAADAAILDAASQHATDMPRVQNAISLYANVSGIR
WHYDCDPEHLAGWISAPESDAVQAFVFDLVSEDRFSIANRLWSLMDETTA
VAVASAAGERAGHGGRG*
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mRNA from alignment at P-wetherbeei_contig8026:1210..2744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8026.1.1 ID=mRNA_P-wetherbeei_contig8026.1.1|Name=mRNA_P-wetherbeei_contig8026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1535bp|location=Sequence derived from alignment at P-wetherbeei_contig8026:1210..2744- (Phaeothamnion wetherbeei SAG_119_79)
CACAGGACGCCATAAGTCGCCAAAAACCGCAGCGCGAGCAAACCATGGTC
CAACTGACATGGTCCGAGACGCGCGACATCATGGAGTCCCTGGAAGCCCT
CTACTCAGACGGCGCCGACGTGGCGGAGGCGAACAAGGTGCGAGCTCTGC
ACTCCGAAGCCGAGCGAGAGGCAGCGCGGCGCGCTGCGGACGCGCGTCAC
ATCATAAAAGGCAAGCGATGCGGAGCCACCTGTGGCGACAGATCTTGTCT
AACACTCTTTTGTTTTTGAATCCATGGTTCTCTCGACATTTCTCCGTTGT
GAATTCGGCACCATCATTAACAGCAACAGCTTTGGGTACTTGACTTTCCG
TCACTGCGGTACAGAAATTACGGCTCGGGTCGCACATAAAGAGGCTGCGC
TCTCCTGGCCGCTGAAGGACGAACTCGCCGCCAACTGCAAGCGACTCCAA
GAGGAGGCGGAAGTCCTTCGGGACGGATTGGAACGGAGCGTCGCCGTTGC
TGCGCATGAAGAAGCCGCGTTGGCAGCTACGCGCAGCAAGGTGGACGCAG
CCGACGCCGCCATTCTCGATGCCGCGTCTCAGCACGCTACCGACATGCCA
CGAGTGCAGAACGCCATCTCGCTGTATGCCAACGTCAGCGGCATTCGCTG
GCATTACGACTGCGACCCCGAGCATCTGGCGGGCTGGTAAGCCCGCAGCA
GCTCCCCCCTCTATGCATTGCAAGTTTCACGCGCCGGTTGGCATCGCCCC
ATCGGCTTGCGTGCCATTTGGCCGCCGCCTTCTTTGAGTATCCTCAGCTC
TTCGTCATGTCGTCGGTGTGGCTTTCAGCCGCCGAATTTGTCCTCTGCCG
TTGCCGACGCTGCCATTGCCCTTGACGACGCCTCGATCGCCACCGTTGCC
CCATGCCACCGCCGTCATGTGGTGCAGGATATCCGCGCCCGAGAGTGACG
CGGTGCAGGCCTTTGTGTTCGACTTGGTCAGCGAAGACCGCTTCAGCATC
GCCAATAGGCTGTGGTCCCTCATGGACGAAACGACAGCAGTCGCCGTGGC
ATCCGCTGCTGGAGAACGAGCAGGGCACGGGGGAAGGGGATAGCGTGATG
CTTCGAAGGCGGCTGCGTTGCTGAAGTATGAATGTATTATATATAAATTG
CTTTAAGATCGGTTTTGAACAGTTCGAAAAAGTCATCATAGAAAATGCGT
TCATACTGGAGAGGCAGCACTTGCTGGAAATGCTTAGCGCAGCAGGCAGG
CATTGCCTGTAATACCGCCGCTTCTTTCCTCCTCTCTGTTTTCATCTCGT
GAGAGCGTCATTTGACGAGAATGGGGAGGCTTTGCTTGTCACGTGTCATG
AGGAAACGATGTGATGCTTTTGAAAGCAGTAGGCTTTTGCTTCAATAAGT
TGCAAGAGAGTCTCTCTTTGGGTTTGATCCGAAACGAGGAGGTGGCTGTT
GTGGCCTTAATCTCATCAGCGCTATCTGTTTTACAATCAAAGCAGCGGAA
CGAAATTAACCATGCACCACGGCGGCCAAATGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8026:1210..2744-

>mRNA_P-wetherbeei_contig8026.1.1 ID=mRNA_P-wetherbeei_contig8026.1.1|Name=mRNA_P-wetherbeei_contig8026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig8026:1210..2744- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCAACTGACATGGTCCGAGACGCGCGACATCATGGAGTCCCTGGA
AGCCCTCTACTCAGACGGCGCCGACGTGGCGGAGGCGAACAAGGTGCGAG
CTCTGCACTCCGAAGCCGAGCGAGAGGCAGCGCGGCGCGCTGCGGACGCG
CGTCACATCATAAAAGAAATTACGGCTCGGGTCGCACATAAAGAGGCTGC
GCTCTCCTGGCCGCTGAAGGACGAACTCGCCGCCAACTGCAAGCGACTCC
AAGAGGAGGCGGAAGTCCTTCGGGACGGATTGGAACGGAGCGTCGCCGTT
GCTGCGCATGAAGAAGCCGCGTTGGCAGCTACGCGCAGCAAGGTGGACGC
AGCCGACGCCGCCATTCTCGATGCCGCGTCTCAGCACGCTACCGACATGC
CACGAGTGCAGAACGCCATCTCGCTGTATGCCAACGTCAGCGGCATTCGC
TGGCATTACGACTGCGACCCCGAGCATCTGGCGGGCTGGATATCCGCGCC
CGAGAGTGACGCGGTGCAGGCCTTTGTGTTCGACTTGGTCAGCGAAGACC
GCTTCAGCATCGCCAATAGGCTGTGGTCCCTCATGGACGAAACGACAGCA
GTCGCCGTGGCATCCGCTGCTGGAGAACGAGCAGGGCACGGGGGAAGGGG
ATAG
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