mRNA_P-wetherbeei_contig8018.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8018.2.1
Unique NamemRNA_P-wetherbeei_contig8018.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A7X9AG26_9BURK (PDZ domain-containing protein (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AG26_9BURK)

HSP 1 Score: 131 bits (329), Expect = 2.850e-35
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   22 LVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFR 354
            L YAAL GLV  + DPY TV DP +Y+   EQMSGG+FGG+G+Y+E D  H+ RLTV+EPIE +PA  AG++ GD ++ I+G+DT  +DIE A   IRGE GT V L + R
Sbjct:  130 LSYAALTGLVEAINDPYTTVMDPEQYRRLSEQMSGGNFGGVGIYLEADLRHERRLTVIEPIEKSPAAAAGIRTGDWITHIDGEDTSEFDIEAATLKIRGEVGTRVVLTLKR 240          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A1E4GE03_9BACT (PDZ domain-containing protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4GE03_9BACT)

HSP 1 Score: 123 bits (309), Expect = 1.120e-30
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFRPSD 363
            DKV +  L YA + GL+ GL D Y  +  P E+   DEQ++   FGGIGVY+E+D+   N+LT+ EPIE TPA+NAGL  GD + KI+G+ T G  ++ A  +IRGEEGTPV L + R  +
Sbjct:  161 DKVDKSLLGYATMNGLLEGLKDNYSVLMTPAEWGKMDEQLNSRTFGGIGVYIELDREGGNQLTIFEPIEGTPAYNAGLLSGDKVLKIDGKTTAGVTLDVAQTMIRGEEGTPVVLTVERDKE 281          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A7Z9PRN3_9BACT (S41 family peptidase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRN3_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.750e-29
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFRPSD 363
            DKV E  L +AA+ G++ GL D Y  +  P +Y    EQM    FGGIG+Y+E+D+  DNRLTV EPIE TPA+ AGL  GD + KI+G+ T G  +E+A N IRG +G+ V L + R  +
Sbjct:  170 DKVDEDLLTFAAILGMLDGLEDHYSLLMLPKDYSKLQEQMQNTEFGGIGIYIELDRDDDNRLTVFEPIEGTPAYEAGLMAGDKVVKIDGESTDGITLEQAQNKIRGPKGSKVVLTVKRKGE 290          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A7X8XPR3_9BURK (S41 family peptidase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPR3_9BURK)

HSP 1 Score: 117 bits (293), Expect = 2.970e-28
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFR 354
             KVP+  LVYAA++G++ GL DPY  +  P EY    EQ+    FGGIGVY+E+D+   N+LTV EPIE TPA  AG++ GD +  I+G+ TKG  ++ A   IRG  GT V L I R
Sbjct:  220 SKVPKDVLVYAAIQGMLVGLDDPYSVLMGPDEYGKLQEQVQNKEFGGIGVYIELDRDAGNQLTVFEPIEGTPAAQAGVEPGDRILAIDGKSTKGISMDGAQAAIRGPVGTKVVLTIKR 337          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A3D1B1U7_9BACT (S41 family peptidase n=1 Tax=Candidatus Staskawiczbacteria bacterium TaxID=2053617 RepID=A0A3D1B1U7_9BACT)

HSP 1 Score: 114 bits (286), Expect = 7.310e-28
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFR 354
             K+ +QK++Y A++G+   LGDPY + F P E + F + +SG  F GIG  + + K   ++LT++ P+E TPA +AGLK GD++ +INGQD     IE+AVNLIRG EGT V L I+R
Sbjct:   67 SKIDDQKIIYGAIKGMAESLGDPYTSFFTPEEAETFMQSLSGS-FEGIGAELGIRK---DQLTIIAPLEGTPAQSAGLKAGDIILEINGQDASNITIEEAVNLIRGPEGTDVVLTIYR 180          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: B0TGX9_HELMI (Carboxyl-terminal-processing protease n=2 Tax=Heliomicrobium TaxID=2831443 RepID=B0TGX9_HELMI)

HSP 1 Score: 114 bits (285), Expect = 9.040e-28
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFRPSDNSNFE 378
            + V    LV  A++G+VA L DPY    +P EYKH  EQ+ G  F GIGVY+   K   N++ VV PI+  PA  AGLK GDV+ K+NG+D    D++ AV+ I+G EGT V+L +FR +  S  E
Sbjct:   53 EPVSVNDLVNGAMKGMVAALKDPYSVYMEPKEYKHLTEQIEGA-FTGIGVYIN--KKDTNQMVVVSPIKGGPAERAGLKSGDVIVKVNGEDVADMDVDVAVSKIKGPEGTEVNLTVFREASKSLLE 175          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A847PG32_9BACT (S41 family peptidase n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A847PG32_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.420e-27
Identity = 54/125 (43.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    4 KVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFRPSDNSNFE 378
            +V   +LV  A++G++  L DPY    +P  ++   E +  GHFGG+G+++ M    + +LTV+ PIEDTPA+ AG+K  D +  I+G+ TKG  +++AVNL+RGEEGT V L I R +   NFE
Sbjct:   63 EVDPTRLVQGAIKGMLQELNDPYSRYLNPITFQREQENILMGHFGGLGIHVTM---VEEQLTVISPIEDTPAYQAGIKANDKIMAIDGESTKGISLDEAVNLMRGEEGTAVTLTIKRENIEDNFE 184          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A6F9ZXU9_9BACT (S41 family peptidase n=1 Tax=Candidatus Uhrbacteria bacterium TaxID=2053634 RepID=A0A6F9ZXU9_9BACT)

HSP 1 Score: 114 bits (285), Expect = 1.450e-27
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    7 VPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFRPSD 363
            + +Q L Y A+ GL    GDPY   F+P   + F E +SG  F GIG  +      D R+T+V P+ DTPA  AGL+ GD++  ING  T+G  +++AV+LIRGEEGT V LNIFRPS+
Sbjct:   91 IDDQTLFYGAMSGLANAFGDPYTQYFEPKGAEEFQEALSG-KFSGIGAEIG---PKDGRITIVAPLPDTPAERAGLRPGDLILSINGTSTEGMTVDRAVSLIRGEEGTRVTLNIFRPSN 205          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A1V5PH10_9BACT (Carboxy-terminal processing protease CtpA n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PH10_9BACT)

HSP 1 Score: 114 bits (285), Expect = 1.680e-27
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   13 EQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFR 354
            E+ ++ AAL G++  L DPY    DP  Y+ +++ M    + GIG+++E+D  ++N LT+VEPIE+TPA+ AGL+ GD + +ING +TKG DI++A NLI+G E + + L I R
Sbjct:  115 EKDILRAALDGMLHSLKDPYTIYMDPRYYEQYNQAMGASDYSGIGIFIELDTKNNNHLTIVEPIEETPAYRAGLRPGDEIIEINGVETKGIDIDRAANLIKGPEESILVLKIKR 228          
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Match: A0A359LIT5_9BACT (PDZ domain-containing protein n=2 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A359LIT5_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.830e-27
Identity = 51/112 (45.54%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   19 KLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGVYMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKAVNLIRGEEGTPVHLNIFR 354
            K++  A++G++  L DPY    DP   K   E M  GHFGG+G+ + +    D++LT++ PIEDTPA+ AG+K GD + +ING+ T+G ++E+AVN++RGE+GT V L I R
Sbjct:   68 KIIQGAIKGMLKALDDPYTRYMDPQALKREQEDMFLGHFGGLGIIISI---KDDQLTIISPIEDTPAYRAGIKAGDKIVEINGKSTEGIELEEAVNVLRGEKGTQVILGIER 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AG26_9BURK2.850e-3554.95PDZ domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A1E4GE03_9BACT1.120e-3048.76PDZ domain-containing protein n=1 Tax=bacterium SC... [more]
A0A7Z9PRN3_9BACT1.750e-2947.93S41 family peptidase n=1 Tax=Phycisphaerales bacte... [more]
A0A7X8XPR3_9BURK2.970e-2849.15S41 family peptidase n=1 Tax=Burkholderiales bacte... [more]
A0A3D1B1U7_9BACT7.310e-2847.46S41 family peptidase n=1 Tax=Candidatus Staskawicz... [more]
B0TGX9_HELMI9.040e-2846.03Carboxyl-terminal-processing protease n=2 Tax=Heli... [more]
A0A847PG32_9BACT1.420e-2743.20S41 family peptidase n=1 Tax=Candidatus Atribacter... [more]
A0A6F9ZXU9_9BACT1.450e-2747.90S41 family peptidase n=1 Tax=Candidatus Uhrbacteri... [more]
A0A1V5PH10_9BACT1.680e-2744.74Carboxy-terminal processing protease CtpA n=1 Tax=... [more]
A0A359LIT5_9BACT1.830e-2745.54PDZ domain-containing protein n=2 Tax=Candidatus A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8018contigP-wetherbeei_contig8018:2540..2917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog246194.CHY_0170
Preferred namectpA
PFAMsPDZ_2,Peptidase_S41
Model size378
Max annot lvl186801|Clostridia
KEGG koko:K03797
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-31
EggNOG OGsCOG0793@1|root,COG0793@2|Bacteria,1TPBI@1239|Firmicutes,248HZ@186801|Clostridia,42EZ3@68295|Thermoanaerobacterales
EC3.4.21.102
DescriptionBelongs to the peptidase S41A family
Cds size378
COG categoryM
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.9100652-CDS-P-wetherbeei_contig8018:2539..29171683187015.9100652-CDS-P-wetherbeei_contig8018:2539..2917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8018 2540..2917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8018.2.1prot_P-wetherbeei_contig8018.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8018 2540..2917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8018.2.1

>prot_P-wetherbeei_contig8018.2.1 ID=prot_P-wetherbeei_contig8018.2.1|Name=mRNA_P-wetherbeei_contig8018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
DKVPEQKLVYAALRGLVAGLGDPYCTVFDPTEYKHFDEQMSGGHFGGIGV
YMEMDKAHDNRLTVVEPIEDTPAFNAGLKEGDVLSKINGQDTKGWDIEKA
VNLIRGEEGTPVHLNIFRPSDNSNFE
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mRNA from alignment at P-wetherbeei_contig8018:2540..2917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8018.2.1 ID=mRNA_P-wetherbeei_contig8018.2.1|Name=mRNA_P-wetherbeei_contig8018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig8018:2540..2917+ (Phaeothamnion wetherbeei SAG_119_79)
GATAAGGTGCCCGAGCAAAAGCTGGTCTACGCCGCGTTACGCGGTCTGGT CGCCGGGCTGGGTGACCCTTACTGCACCGTGTTCGACCCTACGGAATACA AGCACTTCGATGAGCAGATGTCGGGCGGCCACTTCGGCGGCATTGGCGTT TATATGGAGATGGACAAAGCTCACGATAATCGTCTGACGGTCGTCGAGCC TATCGAAGACACGCCTGCTTTTAACGCCGGTCTCAAGGAAGGCGACGTGC TTTCCAAGATCAACGGCCAGGACACGAAGGGTTGGGATATCGAGAAGGCC GTGAATCTGATTCGCGGTGAGGAGGGAACTCCGGTCCACCTCAACATCTT CCGCCCCTCCGACAACAGCAATTTCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8018:2540..2917+

>mRNA_P-wetherbeei_contig8018.2.1 ID=mRNA_P-wetherbeei_contig8018.2.1|Name=mRNA_P-wetherbeei_contig8018.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig8018:2540..2917+ (Phaeothamnion wetherbeei SAG_119_79)
GATAAGGTGCCCGAGCAAAAGCTGGTCTACGCCGCGTTACGCGGTCTGGT
CGCCGGGCTGGGTGACCCTTACTGCACCGTGTTCGACCCTACGGAATACA
AGCACTTCGATGAGCAGATGTCGGGCGGCCACTTCGGCGGCATTGGCGTT
TATATGGAGATGGACAAAGCTCACGATAATCGTCTGACGGTCGTCGAGCC
TATCGAAGACACGCCTGCTTTTAACGCCGGTCTCAAGGAAGGCGACGTGC
TTTCCAAGATCAACGGCCAGGACACGAAGGGTTGGGATATCGAGAAGGCC
GTGAATCTGATTCGCGGTGAGGAGGGAACTCCGGTCCACCTCAACATCTT
CCGCCCCTCCGACAACAGCAATTTCGAA
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