mRNA_P-wetherbeei_contig8013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A836C7Y7_9STRA (RNA recognition motif 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y7_9STRA) HSP 1 Score: 262 bits (670), Expect = 5.800e-87 Identity = 125/155 (80.65%), Postives = 139/155 (89.68%), Query Frame = 1
Query: 43 GGSACDEFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATKARR 507
GG + EF LD+ KIAKG DKRTTIMIRNIPNKYTQAMLL+EI+ N+ EA+DFFYLPIDFKN+CNVGYAFINF+DFRRI+ F REF+GQRW+NFNSEKVCAI+YARIQGKASMI RFQNSSLMEKDGEYRPLLF S+G +RGRPEPFP TK RR
Sbjct: 2 GGPSEAEFALDIGKIAKGLDKRTTIMIRNIPNKYTQAMLLQEINVNFLEAFDFFYLPIDFKNRCNVGYAFINFIDFRRIIAFTREFHGQRWRNFNSEKVCAISYARIQGKASMICRFQNSSLMEKDGEYRPLLFYSSGPDRGRPEPFPLGTKQRR 156
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: D7FMB4_ECTSI (RRM_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB4_ECTSI) HSP 1 Score: 281 bits (718), Expect = 6.520e-87 Identity = 143/190 (75.26%), Postives = 157/190 (82.63%), Query Frame = 1
Query: 16 SCGPAVGGGGGSACDEFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATKARRSFNICGGAGPGGGGGPTGAGVIGPRE 585
S GP G GG EF LD+KK++KG DKRTTIM+RNIPNKYTQ MLL+EID++YR AYDFFYLPIDFKNKCNVGYAFINFMD+RRIVPFFREFN QRWKNFNSEKVCAI+YARIQGKASMISRFQNSSLMEKDGEYRPL+F S G ERGRPEPFP ++KA R+ PGGGGG GV G R+
Sbjct: 606 SAGPECSGNGGH---EFSLDLKKVSKGMDKRTTIMVRNIPNKYTQMMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRAVLA-----PGGGGG----GVFGVRD 783
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A7S2V2F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F9_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.090e-76 Identity = 107/157 (68.15%), Postives = 135/157 (85.99%), Query Frame = 1
Query: 49 SACDEFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATKARRSFNI 519
S ++F LDVK++ +D+RTT+M+RNIPNKYTQ MLL+EI+ N++E YDFFYLPIDFKNKCNVGYAFINF+ IV F+ EFNG++WKNFNSEKVC I+YARIQGK+SMISRFQNSSLM+KDGE++PLLF S+G+ +G+PE FP A K +RSF++
Sbjct: 16 SNTEDFKLDVKRVLARSDQRTTVMVRNIPNKYTQQMLLQEINVNHKETYDFFYLPIDFKNKCNVGYAFINFISPLSIVEFYEEFNGRKWKNFNSEKVCCISYARIQGKSSMISRFQNSSLMDKDGEFQPLLFHSSGSNKGKPEKFPIAGKTKRSFSV 172
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A836CK27_9STRA (RNA recognition motif 2-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK27_9STRA) HSP 1 Score: 233 bits (594), Expect = 3.640e-76 Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 70 LDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLF 444
LD KKIAKG D+RTTIMIRNIPNKYTQAMLL+EIDAN+R YDFFYLPIDFKN+CNVGYAFINF+DFRRIV F REF+GQRW+NFNSEKVCAI+YARIQGKASMISRFQNSSLMEKDGEYRPLLF
Sbjct: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 125
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A7S2SS48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS48_9STRA) HSP 1 Score: 238 bits (606), Expect = 4.510e-70 Identity = 108/145 (74.48%), Postives = 129/145 (88.97%), Query Frame = 1
Query: 61 EFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCAT 495
EF L++ ++ +G+D+RTT+M+RNIPNKYTQA +L EI+ N++ YDFFYLPIDFKNKCNVGYAF+NF+DFR IV FF +FNG+RW NFNSEKVCAITYARIQGK SMISRFQNSSLMEKDGEYRPLLF S+G E+GRPEPFP ++
Sbjct: 727 EFSLNIDRVMQGSDRRTTLMVRNIPNKYTQAAVLEEINENFQGLYDFFYLPIDFKNKCNVGYAFMNFIDFRSIVSFFCKFNGRRWNNFNSEKVCAITYARIQGKTSMISRFQNSSLMEKDGEYRPLLFHSSGPEKGRPEPFPTSS 871
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A7S2BIN8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIN8_9STRA) HSP 1 Score: 227 bits (578), Expect = 7.870e-70 Identity = 104/146 (71.23%), Postives = 124/146 (84.93%), Query Frame = 1
Query: 61 EFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATK 498
EFGL++ I +G D+RTT+MIRNIPNKYTQ +L EI+ +++ YDFFYLPIDFKNKCNVGYAFINF++FR IVPF +++G+RW NFNSEKVCAITYARIQGKASMISRFQNSSLM+K GE+RPLLF S G RG PEPFP ++
Sbjct: 257 EFGLNIDHIMQGVDRRTTVMIRNIPNKYTQMAVLEEINQHFKGTYDFFYLPIDFKNKCNVGYAFINFIEFRAIVPFVCKYHGRRWNNFNSEKVCAITYARIQGKASMISRFQNSSLMDKSGEFRPLLFQSTGVNRGLPEPFPACSQ 402
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A4D9D2V8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2V8_9STRA) HSP 1 Score: 238 bits (606), Expect = 4.350e-69 Identity = 109/146 (74.66%), Postives = 129/146 (88.36%), Query Frame = 1
Query: 61 EFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATK 498
EF LDV++I G D+RTTIM+RN+PNKY+Q +LL EI+A ++ YDFFYLPIDFKNKCNVGYAFINF++ + IVPFF+EFNGQRW+NFNSEKVCAI+YARIQGK SMISRF NSSLMEKDGEYRPLLF S+G +RG+PEPFP + K
Sbjct: 1106 EFHLDVERILMGMDRRTTIMVRNVPNKYSQQLLLNEINATHKGKYDFFYLPIDFKNKCNVGYAFINFIEPKAIVPFFKEFNGQRWRNFNSEKVCAISYARIQGKQSMISRFSNSSLMEKDGEYRPLLFYSSGPDRGKPEPFPSSLK 1251
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A482RU13_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU13_9ARCH) HSP 1 Score: 211 bits (538), Expect = 6.080e-67 Identity = 92/151 (60.93%), Postives = 124/151 (82.12%), Query Frame = 1
Query: 46 GSACDEFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFPCATK 498
G +F LD++++ G++ RTT+M+RNIPNKY+Q MLL E++A ++ YDFFYLPIDFKN+CNVGYAFINF+ IV F R F GQRW++FNSEK+C++TYARIQGKA+++SRFQNSSL++KD Y+PLLF S+G ++G+PEPFP +K
Sbjct: 24 GEGVGDFALDLQRLQDGSETRTTLMVRNIPNKYSQQMLLEEVNAQHQGQYDFFYLPIDFKNRCNVGYAFINFLSPLHIVDFVRRFEGQRWRSFNSEKICSVTYARIQGKAALVSRFQNSSLLDKDDTYKPLLFRSSGPDQGQPEPFPAPSK 174
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A3R7KLF4_9STRA (RRM_2 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KLF4_9STRA) HSP 1 Score: 214 bits (544), Expect = 6.870e-65 Identity = 98/142 (69.01%), Postives = 118/142 (83.10%), Query Frame = 1
Query: 61 EFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFP 486
EF L ++++A G D RTT+MIRNIPNKYTQ MLL EI+ N+R YDFFYLPIDFKNKCN+GYAFINF++ I F REF+GQ+W NFNSEKVCAI+YAR+QGK +MI+RFQNSSL+EK YRPL+F S+G RG+PEPFP
Sbjct: 230 EFSLSIERVASGEDMRTTLMIRNIPNKYTQQMLLAEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHREFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLEKHESYRPLVFGSSGPNRGKPEPFP 371
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Match: A0A7S3Y2P3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P3_HETAK) HSP 1 Score: 206 bits (523), Expect = 1.320e-64 Identity = 95/142 (66.90%), Postives = 114/142 (80.28%), Query Frame = 1
Query: 61 EFGLDVKKIAKGADKRTTIMIRNIPNKYTQAMLLREIDANYREAYDFFYLPIDFKNKCNVGYAFINFMDFRRIVPFFREFNGQRWKNFNSEKVCAITYARIQGKASMISRFQNSSLMEKDGEYRPLLFCSNGTERGRPEPFP 486
E+ L++++I GAD RTT+M+RNIPNKYTQ MLL EI+A + YDFFYLPIDFKN+CNVGYAF+NF+ R I F R F+GQRW FNSEKVCAI YAR+QG+ +MI+RFQNSSL+ K+G YRPLLF S G GRPEPFP
Sbjct: 26 EYSLNMQQILDGADLRTTVMVRNIPNKYTQQMLLDEINAEFEGTYDFFYLPIDFKNRCNVGYAFVNFLSARTIPAFHRRFDGQRWGTFNSEKVCAIAYARLQGRRAMIARFQNSSLLAKEGRYRPLLFHSAGPLAGRPEPFP 167 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8013.1.1 >prot_P-wetherbeei_contig8013.1.1 ID=prot_P-wetherbeei_contig8013.1.1|Name=mRNA_P-wetherbeei_contig8013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp MVRRESCGPAVGGGGGSACDEFGLDVKKIAKGADKRTTIMIRNIPNKYTQback to top mRNA from alignment at P-wetherbeei_contig8013:448..1583- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8013.1.1 ID=mRNA_P-wetherbeei_contig8013.1.1|Name=mRNA_P-wetherbeei_contig8013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1136bp|location=Sequence derived from alignment at P-wetherbeei_contig8013:448..1583- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8013:448..1583- >mRNA_P-wetherbeei_contig8013.1.1 ID=mRNA_P-wetherbeei_contig8013.1.1|Name=mRNA_P-wetherbeei_contig8013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig8013:448..1583- (Phaeothamnion wetherbeei SAG_119_79)back to top |