mRNA_P-wetherbeei_contig8008.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8008.1.2
Unique NamemRNA_P-wetherbeei_contig8008.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8008.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8008contigP-wetherbeei_contig8008:350..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1532
Hectar predicted targeting categoryother localisation
Exons4
Cds size1347
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8008.1.2prot_P-wetherbeei_contig8008.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8008 358..2743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.3649817-UTR-P-wetherbeei_contig8008:349..3571683187015.3649817-UTR-P-wetherbeei_contig8008:349..357Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8008 350..357 -
1683187015.4264467-UTR-P-wetherbeei_contig8008:2743..29201683187015.4264467-UTR-P-wetherbeei_contig8008:2743..2920Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8008 2744..2920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.375601-CDS-P-wetherbeei_contig8008:357..8401683187015.375601-CDS-P-wetherbeei_contig8008:357..840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8008 358..840 -
1683187015.385123-CDS-P-wetherbeei_contig8008:1159..12971683187015.385123-CDS-P-wetherbeei_contig8008:1159..1297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8008 1160..1297 -
1683187015.3952775-CDS-P-wetherbeei_contig8008:1656..18401683187015.3952775-CDS-P-wetherbeei_contig8008:1656..1840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8008 1657..1840 -
1683187015.4062214-CDS-P-wetherbeei_contig8008:2201..27431683187015.4062214-CDS-P-wetherbeei_contig8008:2201..2743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8008 2202..2743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8008.1.2

>prot_P-wetherbeei_contig8008.1.2 ID=prot_P-wetherbeei_contig8008.1.2|Name=mRNA_P-wetherbeei_contig8008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
MTRFSYHARPERTWAGRHRRRRCWLMHELKSKFWQNCSTSRSRSEKRVVL
HGALPHCAQAVLRLNFTGSNTRLRSNENSHMGSIRLFFIWLAVFFLHDGY
WRSGAEVQRAPHTASSATAASRSLCDDKRSCENTYIEALSRIRESWGTRV
QSFMCSYDVTRAPTAEELIFFFPSPGTTGTRSMTVFLGKTCGWDVHHSRA
YILGREQEHPPWQPADIRTNGDNAMRAEGSSLMDDARLMRPEREALHAMN
ETTDSFLDSHRILPDLIPPGRDMPVDAVLDSPMAALFFDIFHQFPNARFV
LLHRDPALWAPSRKKHHPDSTAPILRMPASAIPDASLDEMAAVFTAHEAY
VRCKVPPERLLEVDYFKEISQRVGWTEQVTAGAVAEAQMAAFVEAAGRPC
LRYTPSAAVAEAVAEQAAGVSGVLPTGMGGGDVIIASEIVPGAHRRLR*
back to top

mRNA from alignment at P-wetherbeei_contig8008:350..2920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8008.1.2 ID=mRNA_P-wetherbeei_contig8008.1.2|Name=mRNA_P-wetherbeei_contig8008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2571bp|location=Sequence derived from alignment at P-wetherbeei_contig8008:350..2920- (Phaeothamnion wetherbeei SAG_119_79)
AGGAGCGCTCTTGCGTCTACATTTTATCTCCAACACGTCGCCTAGACCCT
TCTATGTACCCTCCAATGCCTGCGCGGCGCCGCCCGGCTGCGCGCTCGGG
AAATCAGCGAGATAAGCCGATGGCGGCTGTGGAAAGCCTTGAAATTTTCT
TTAAAGTGCGATTCGAACGCATCCGCGATGACCCGGTTCTCCTATCATGC
ACGGCCTGAGCGAACCTGGGCGGGCCGCCACCGACGCCGCCGCTGTTGGC
TGATGCATGAATTAAAATCAAAATTTTGGCAAAATTGTTCGACAAGCCGA
AGCAGAAGCGAAAAGCGCGTTGTTTTGCACGGTGCGTTACCCCATTGCGC
GCAGGCGGTCTTACGGCTCAATTTCACCGGTTCGAACACCCGCTTGCGCA
GCAACGAGAACTCACACATGGGTTCGATTCGGCTCTTCTTCATTTGGCTC
GCAGTCTTCTTCCTTCATGATGGCTACTGGAGAAGCGGCGCGGAGGTACA
GAGAGCTCCACACACGGCATCGTCAGCGACGGCTGCGAGCCGGAGCCTTT
GCGACGACAAGCGTTCGTGCGAGAACACGTATATAGAAGCCCTCTCTCGG
ATTCGCGAGAGCTGGGGTACGCGCGTGCAATCCTTCATGTGCTCGTACGA
CGTCACCAGGGCACCGACGGCGGAAGAGCTGATATTCTTTTTCCCCTCTC
CCGGAACGACTGGAACGAGGCGAGTTTCTTCCCTCTCTCCGCATGAATGA
TTGAGCGAGCGAGGCAGTGGGAACCCTTCTCGTGTTTCCTCCTGGTTACG
TACTGCTTTTTGTGCTAGCTAGGCTGCTGCTTCGAAATAAGTTCTCACTC
CGGCTTGCTTTGCCTTCTACTGGCCGTTTGTCTTTAGTTGGCATTTTCGT
TTGCTGAAGCAACGTGCCGTTGATGAGCCTCTCAGCGCCTTCCGCTCCAG
TAGGGCATATGTGTCGTTGTTCCATACCGGTCTTGGCTGCTAGTCTCATT
AATCCTGACCGACTGATGCTGCCAATGTCTCTGTCGCTTGTGGCCCCCCC
CCCCCCCCGGGGCGCCGCCCGCCTCCTCAGATCGATGACCGTCTTTCTCG
GCAAGACCTGCGGATGGGATGTTCACCACAGCCGCGCGTACATCTTAGGC
CGGGAGCAGGAGCACCCCCCATGGCAGCCGGCCGACATCAGGACGAATGG
TGACAATGCCATGCGAGCGGAAGGCTCCTCGCTCATGGACGACGCCAGGC
TCATGAGACCCGAGGTGAGAGACGGAAGAGGGAGACGAAATGAGGCGACG
AGGAAGAAAATTTGTCCTGAAACGTGGTTTTGGCGCGCGCCAGTAGCTCG
CTCGTGTTGTGGAGCGACGGGCGAGCGAGCGACGTCTCGCAGCGAGCCCA
TGCCAAACTTTGCTTTATAATGCGATACAACGGCGCGCATCATCGCACCA
TCAGGAGTGATTCATCAGGTGCTTTCCTCCGCCGCTTCTTATCGCTGCGC
GCCTCGTTTCAGTAACATCGTTCTATTCTCTTTCTTCACGACGAAGATTG
TCATGGTTCTCTCCCGCTGATGGCGCCGCTCGTTGTTTCTTGCGTCCGTC
CTGGAACGTCGCTCATGCTGCAGCGGGAGGCGCTGCATGCTATGAACGAG
ACCACCGACAGTTTCCTAGACTCGCACCGCATCCTGCCGGACCTGATTCC
CCCGGGCCGTGATATGCCCGTGGACGCCGTCCTTGACTCGCCCATGGCCG
CGCTCTTCTTTGTGAGGAACAAGTGGGGGCGACTGTGGCTAGCTAGTTTG
AGTACTAAAGCCGGCAATTTGCAACCCCGTCTGCTGCGCCTGTGCAATAC
TATTAATTTCTCTTCCTCCCTTTCCCCCAAACTTTCCAAATCCGATGGCG
GCAATGCAGAAAACAGAAGATATCTCGAGAGTGGTGGACGGCTTCTTTTC
TTGGCTCCGCCCCTTGTTTCAACTGACTTTCCTTATGCGACGCGGCCCGC
GTCGGTTCCTCTTTGGCCCGCCGCCCGCCCCTGCTCTCGGCCGAATTTTC
TCTTCTGCCCTGCCGCACCGCCGGCCGCAGGACATATTCCATCAGTTCCC
GAACGCGCGCTTCGTCTTGCTGCATCGCGACCCGGCCTTATGGGCGCCGT
CCCGAAAGAAGCACCACCCGGATTCCACGGCCCCCATCCTCCGCATGCCA
GCGTCGGCGATCCCGGACGCGTCGCTTGACGAGATGGCGGCCGTTTTCAC
CGCACACGAAGCATATGTCCGCTGCAAGGTCCCGCCAGAGCGGCTGCTGG
AGGTCGACTACTTCAAGGAAATTTCGCAGCGGGTCGGCTGGACGGAGCAG
GTGACGGCCGGCGCCGTCGCCGAGGCGCAGATGGCGGCGTTTGTGGAGGC
GGCCGGGCGGCCTTGTCTCCGGTACACGCCCTCGGCTGCGGTGGCTGAGG
CGGTGGCGGAGCAGGCGGCCGGCGTGAGCGGCGTCCTGCCGACGGGAATG
GGCGGCGGCGACGTGATCATTGCCAGTGAGATCGTTCCCGGGGCGCACCG
GAGGCTGCGGTAGGGTAAGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8008:350..2920-

>mRNA_P-wetherbeei_contig8008.1.2 ID=mRNA_P-wetherbeei_contig8008.1.2|Name=mRNA_P-wetherbeei_contig8008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig8008:350..2920- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGGTTCTCCTATCATGCACGGCCTGAGCGAACCTGGGCGGGCCG
CCACCGACGCCGCCGCTGTTGGCTGATGCATGAATTAAAATCAAAATTTT
GGCAAAATTGTTCGACAAGCCGAAGCAGAAGCGAAAAGCGCGTTGTTTTG
CACGGTGCGTTACCCCATTGCGCGCAGGCGGTCTTACGGCTCAATTTCAC
CGGTTCGAACACCCGCTTGCGCAGCAACGAGAACTCACACATGGGTTCGA
TTCGGCTCTTCTTCATTTGGCTCGCAGTCTTCTTCCTTCATGATGGCTAC
TGGAGAAGCGGCGCGGAGGTACAGAGAGCTCCACACACGGCATCGTCAGC
GACGGCTGCGAGCCGGAGCCTTTGCGACGACAAGCGTTCGTGCGAGAACA
CGTATATAGAAGCCCTCTCTCGGATTCGCGAGAGCTGGGGTACGCGCGTG
CAATCCTTCATGTGCTCGTACGACGTCACCAGGGCACCGACGGCGGAAGA
GCTGATATTCTTTTTCCCCTCTCCCGGAACGACTGGAACGAGATCGATGA
CCGTCTTTCTCGGCAAGACCTGCGGATGGGATGTTCACCACAGCCGCGCG
TACATCTTAGGCCGGGAGCAGGAGCACCCCCCATGGCAGCCGGCCGACAT
CAGGACGAATGGTGACAATGCCATGCGAGCGGAAGGCTCCTCGCTCATGG
ACGACGCCAGGCTCATGAGACCCGAGCGGGAGGCGCTGCATGCTATGAAC
GAGACCACCGACAGTTTCCTAGACTCGCACCGCATCCTGCCGGACCTGAT
TCCCCCGGGCCGTGATATGCCCGTGGACGCCGTCCTTGACTCGCCCATGG
CCGCGCTCTTCTTTGACATATTCCATCAGTTCCCGAACGCGCGCTTCGTC
TTGCTGCATCGCGACCCGGCCTTATGGGCGCCGTCCCGAAAGAAGCACCA
CCCGGATTCCACGGCCCCCATCCTCCGCATGCCAGCGTCGGCGATCCCGG
ACGCGTCGCTTGACGAGATGGCGGCCGTTTTCACCGCACACGAAGCATAT
GTCCGCTGCAAGGTCCCGCCAGAGCGGCTGCTGGAGGTCGACTACTTCAA
GGAAATTTCGCAGCGGGTCGGCTGGACGGAGCAGGTGACGGCCGGCGCCG
TCGCCGAGGCGCAGATGGCGGCGTTTGTGGAGGCGGCCGGGCGGCCTTGT
CTCCGGTACACGCCCTCGGCTGCGGTGGCTGAGGCGGTGGCGGAGCAGGC
GGCCGGCGTGAGCGGCGTCCTGCCGACGGGAATGGGCGGCGGCGACGTGA
TCATTGCCAGTGAGATCGTTCCCGGGGCGCACCGGAGGCTGCGGTAG
back to top