mRNA_P-wetherbeei_contig8005.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8005.1.1
Unique NamemRNA_P-wetherbeei_contig8005.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A7S3H9D5_9STRA (GPN-loop GTPase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9D5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.830e-50
Identity = 78/107 (72.90%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:   16 APATRRRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            APA ++  P+V +V+GMAG GKTT++HRLNLHM E  K+ Y++NLDPAVRDVPF A+IDIRDT+NYKEVMKQYGLGPNGGI+TSLNLFATRFDQV+ ILE R+D+L+
Sbjct:   10 APAEKKAMPIVVLVIGMAGAGKTTVMHRLNLHMEENEKRGYYINLDPAVRDVPFAANIDIRDTVNYKEVMKQYGLGPNGGILTSLNLFATRFDQVVNILEKRSDELD 116
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A835YZW9_9STRA (GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.860e-49
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:   31 RRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            RRKPVVCIVLGMAG+GKTTLL R+NL MN + K+ Y++NLDPAV  VPFGA+IDIRDT+NYKEVM QYGLGPNGGIMTSLNLFATRFDQV+G++E R+D  E
Sbjct:   38 RRKPVVCIVLGMAGSGKTTLLQRINLQMNSSDKQGYYINLDPAVTQVPFGANIDIRDTVNYKEVMAQYGLGPNGGIMTSLNLFATRFDQVIGLMEARSDSAE 139
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: D8LKI4_ECTSI (GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI4_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.820e-48
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:   37 KPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            KPVVCIV+GMAG+GKTTLL RLNL+  E G KSYF+NLDPAV+ VPFGASIDIRDT+NYKEVM QYGLGPNG I TSLNLFATRFDQVL +LE R+DDLE
Sbjct:   51 KPVVCIVMGMAGSGKTTLLQRLNLYTAEKGIKSYFINLDPAVKQVPFGASIDIRDTVNYKEVMSQYGLGPNGAITTSLNLFATRFDQVLDLLEKRSDDLE 150
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A7S3RDM7_EMIHU (GPN-loop GTPase (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RDM7_EMIHU)

HSP 1 Score: 160 bits (405), Expect = 1.320e-46
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 SAAGEAPATRRRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            SA G+A ATRR  PV CIVLGMAG+GKTTL+ RLN H++E  +  Y +NLDPAV D PFGA+IDIRDT+NYKEVMKQY LGPNGGI+TSLNLFAT+F +VLG++E RA++L+
Sbjct:   23 SAGGQAGATRR--PVACIVLGMAGSGKTTLMQRLNSHLHEAKRPYYLINLDPAVLDTPFGANIDIRDTVNYKEVMKQYSLGPNGGILTSLNLFATKFHEVLGLVEARAEELD 132
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: W7U6Q0_9STRA (GPN-loop GTPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.050e-46
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:   19 PATRRRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            P   R+KP+V + +GMAG+GKTTL+ RLNL +N  G KSY+VNLDPAV+ VPF A+IDIRDT+NYKEVMKQY LGPNG IMTSLNLFATRFDQVL ILE RA DLE
Sbjct:   56 PPPFRKKPIVLLFMGMAGSGKTTLVQRLNLELNSQGTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVMKQYELGPNGAIMTSLNLFATRFDQVLSILEKRAPDLE 161
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: R1DKJ8_EMIHU (GPN-loop GTPase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKJ8_EMIHU)

HSP 1 Score: 160 bits (405), Expect = 9.710e-46
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 SAAGEAPATRRRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            SA G+A ATRR  PV CIVLGMAG+GKTTL+ RLN H++E  +  Y +NLDPAV D PFGA+IDIRDT+NYKEVMKQY LGPNGGI+TSLNLFAT+F +VLG++E RA++L+
Sbjct:   14 SAGGQAGATRR--PVACIVLGMAGSGKTTLMQRLNSHLHEAKRPYYLINLDPAVLDTPFGANIDIRDTVNYKEVMKQYSLGPNGGILTSLNLFATKFHEVLGLVEARAEELD 123
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A7S0TQC2_HEMAN (GPN-loop GTPase (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TQC2_HEMAN)

HSP 1 Score: 149 bits (376), Expect = 4.530e-43
Identity = 67/101 (66.34%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:   31 RRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDL 333
            R+ PV CIVLGMAG+GKTTL+ R+N+H++E    SY +NLDPAV  +P+G +IDIRDT+NYKEVMKQY LGPNGGIMT+LNLFAT++DQV+ ++E +AD+L
Sbjct:   20 RKNPVACIVLGMAGSGKTTLMQRINVHIHENQLPSYVINLDPAVGALPYGCNIDIRDTVNYKEVMKQYQLGPNGGIMTALNLFATKYDQVMDLVEKKADEL 120
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: Q386F6_TRYB2 (GPN-loop GTPase n=3 Tax=Trypanozoon TaxID=39700 RepID=Q386F6_TRYB2)

HSP 1 Score: 150 bits (379), Expect = 9.370e-43
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:   37 KPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENR 321
            KP+V +V+GMAGTGKTTL+HRL  +  E GKK+YF+NLDPAV DVP+GA+IDIRDT+NYKEV+KQY LGPNG IMTSLNLFAT+F QV+GILE +
Sbjct:    6 KPLVILVVGMAGTGKTTLVHRLQHYAEEKGKKTYFINLDPAVADVPYGANIDIRDTVNYKEVIKQYRLGPNGAIMTSLNLFATKFHQVIGILEKK 100
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A176VGF8_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VGF8_MARPO)

HSP 1 Score: 152 bits (383), Expect = 1.740e-42
Identity = 66/101 (65.35%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:   34 RKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRADDLE 336
            +KP++ IV+GMAG+GKTTL+HRL  H+ E+GK+ Y +NLDPAV ++P+GA+IDIRDT+ YK VMK+YGLGPNGGI+TSLNLFAT+FD+V+G++E RA +L+
Sbjct:   37 KKPIIIIVIGMAGSGKTTLMHRLVAHVQESGKRGYVLNLDPAVTNLPYGANIDIRDTVKYKNVMKEYGLGPNGGILTSLNLFATKFDEVVGLVEKRAPELD 137
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BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Match: A0A7S3B406_9VIRI (GPN-loop GTPase (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B406_9VIRI)

HSP 1 Score: 144 bits (363), Expect = 4.130e-42
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:   31 RRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNLDPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQVLGILENRA 324
            RRKPVV +V+GMAGTGKT+L+H L  H+   G  +Y +NLDPAV  VP+G+++D+RDT+NYKEVM+QY LGPNG I+TSLNLFATRFDQV+ ILE RA
Sbjct:   15 RRKPVVVLVVGMAGTGKTSLMHALTAHLEAKGSPAYTLNLDPAVATVPYGSNLDVRDTVNYKEVMRQYNLGPNGAIVTSLNLFATRFDQVMDILEKRA 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8005.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3H9D5_9STRA1.830e-5072.90GPN-loop GTPase (Fragment) n=1 Tax=Spumella elonga... [more]
A0A835YZW9_9STRA1.860e-4977.45GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=3033... [more]
D8LKI4_ECTSI3.820e-4881.00GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A7S3RDM7_EMIHU1.320e-4669.64GPN-loop GTPase (Fragment) n=2 Tax=Emiliania huxle... [more]
W7U6Q0_9STRA4.050e-4673.58GPN-loop GTPase n=2 Tax=Monodopsidaceae TaxID=4250... [more]
R1DKJ8_EMIHU9.710e-4669.64GPN-loop GTPase n=1 Tax=Emiliania huxleyi TaxID=29... [more]
A0A7S0TQC2_HEMAN4.530e-4366.34GPN-loop GTPase (Fragment) n=2 Tax=Hemiselmis ande... [more]
Q386F6_TRYB29.370e-4373.68GPN-loop GTPase n=3 Tax=Trypanozoon TaxID=39700 Re... [more]
A0A176VGF8_MARPO1.740e-4265.35Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A7S3B406_9VIRI4.130e-4267.35GPN-loop GTPase (Fragment) n=1 Tax=Prasinoderma si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8005contigP-wetherbeei_contig8005:293..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LKI4
Preferred nameGPN1
PFAMsATP_bind_1
Model size339
Max annot lvl2759|Eukaryota
KEGG koko:K00700,ko:K06883,ko:K19513
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005874,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051169,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051641,GO:0051649,GO:0061458,GO:0065003,GO:0070013,GO:0071840,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1903047,GO:1990114
Exons2
Evalue6.27e-49
EggNOG OGsKOG1532@1|root,KOG1532@2759|Eukaryota
EC2.4.1.18
DescriptionGTPase activity
Cds size339
COG categoryKLT
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.206964-CDS-P-wetherbeei_contig8005:292..4121683187015.206964-CDS-P-wetherbeei_contig8005:292..412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8005 293..412 -
1683187015.239942-CDS-P-wetherbeei_contig8005:563..7821683187015.239942-CDS-P-wetherbeei_contig8005:563..782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8005 564..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8005.1.1prot_P-wetherbeei_contig8005.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8005 293..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8005.1.1

>prot_P-wetherbeei_contig8005.1.1 ID=prot_P-wetherbeei_contig8005.1.1|Name=mRNA_P-wetherbeei_contig8005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
SAAGEAPATRRRKPVVCIVLGMAGTGKTTLLHRLNLHMNETGKKSYFVNL
DPAVRDVPFGASIDIRDTINYKEVMKQYGLGPNGGIMTSLNLFATRFDQV
LGILENRADDLE*
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mRNA from alignment at P-wetherbeei_contig8005:293..782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8005.1.1 ID=mRNA_P-wetherbeei_contig8005.1.1|Name=mRNA_P-wetherbeei_contig8005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=490bp|location=Sequence derived from alignment at P-wetherbeei_contig8005:293..782- (Phaeothamnion wetherbeei SAG_119_79)
TCAGCCGCCGGTGAGGCGCCGGCTACGAGGCGAAGGAAACCCGTGGTGTG
CATCGTCCTGGGGATGGCCGGGACGGGGAAGACGACGCTACTCCACCGCC
TCAACCTCCACATGAACGAGACCGGAAAGAAGAGCTACTTCGTCAACCTG
GACCCGGCCGTGCGTGACGTGCCGTTCGGCGCGAGCATCGACATCCGGGA
CACGATCAACTACAAAGAGGTGAGAAGGTTTGCAGCCGCCTGTTGGCCTT
TACCCCAGACCGCTGCCTTTCAACTGGCAGCTGCTGGTTACAATGCGCTT
TCTATGTTTGAACAAAATGTATGAAACATCTGTATTGCACTATTTTTTCC
CTTTGATTGCTTTGCCGCAGGTGATGAAGCAGTACGGGCTCGGCCCCAAC
GGCGGCATCATGACGAGCCTAAACCTCTTCGCGACGCGCTTCGACCAAGT
CCTCGGCATCCTCGAGAACCGCGCCGATGACCTCGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8005:293..782-

>mRNA_P-wetherbeei_contig8005.1.1 ID=mRNA_P-wetherbeei_contig8005.1.1|Name=mRNA_P-wetherbeei_contig8005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig8005:293..782- (Phaeothamnion wetherbeei SAG_119_79)
TCAGCCGCCGGTGAGGCGCCGGCTACGAGGCGAAGGAAACCCGTGGTGTG
CATCGTCCTGGGGATGGCCGGGACGGGGAAGACGACGCTACTCCACCGCC
TCAACCTCCACATGAACGAGACCGGAAAGAAGAGCTACTTCGTCAACCTG
GACCCGGCCGTGCGTGACGTGCCGTTCGGCGCGAGCATCGACATCCGGGA
CACGATCAACTACAAAGAGGTGATGAAGCAGTACGGGCTCGGCCCCAACG
GCGGCATCATGACGAGCCTAAACCTCTTCGCGACGCGCTTCGACCAAGTC
CTCGGCATCCTCGAGAACCGCGCCGATGACCTCGAGTAA
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