mRNA_P-wetherbeei_contig8002.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8002.1.1
Unique NamemRNA_P-wetherbeei_contig8002.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8002contigP-wetherbeei_contig8002:136..1859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQM2
Preferred nameDIEXF
PFAMsUTP25
Model size1725
Max annot lvl2759|Eukaryota
KEGG koko:K14774
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009611,GO:0009653,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022613,GO:0030163,GO:0030490,GO:0030515,GO:0030684,GO:0031016,GO:0031017,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035239,GO:0035265,GO:0035272,GO:0035295,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048483,GO:0048485,GO:0048513,GO:0048546,GO:0048565,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055123,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090594,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1990904
Exons1
Evalue5.74e-13
EggNOG OGsKOG2340@1|root,KOG2340@2759|Eukaryota
Ec32 ortholog descriptionDUF1253 domain protein
Ec32 orthologEc-10_006190.1
DescriptionU3 snoRNA binding
Cds size1542
COG categoryK
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187014.9589868-CDS-P-wetherbeei_contig8002:135..16771683187014.9589868-CDS-P-wetherbeei_contig8002:135..1677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8002 136..1677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187014.9790773-UTR-P-wetherbeei_contig8002:1677..18591683187014.9790773-UTR-P-wetherbeei_contig8002:1677..1859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8002 1678..1859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8002.1.1prot_P-wetherbeei_contig8002.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8002 136..1677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8002.1.1

>prot_P-wetherbeei_contig8002.1.1 ID=prot_P-wetherbeei_contig8002.1.1|Name=mRNA_P-wetherbeei_contig8002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=514bp
MGKGKGKAKSNRKSKGKGKGRKGGKLTWGEKVESASSNEDEFVRKSRKRP
RQETQEIQDKERRLKLLCAVRERSDDVHRRLARPNHKPEPSFSAAVLEPK
PKPRRPRPSKPRPGRNAARSLRRGQVADAADEKEETGKNIGAYERLLASI
GSRGRSFGGVELADLVAVQQLDEAGYNYLDESSDAALDNDDSDGDGEEGN
EEESGSDDGGGVSNDQHAAGVNGNGAAGADTDDGDDDDDDDGVTSHDDGD
DDGNGGGSSGGDAIGNREGSSAVANGAADDNGTSGNGFISDGSDSDMDSL
VGTAADPAAAVTAAGSADPYLRRFVLTRPLPEDEAERRLLPSARPAYVTV
AGGGTAGAASTPAAKAWVDLGLALEACGTATVPPPLSDGAEALEREWHVR
PTLSRGFVAANAAAAAKAVASDEESAADAAATPGTDRAMSRTDGAMTPTQ
ALLLPPLLGYTDLLYSAWTMAEDGGIRRAYALHVLNHVLKTRDRIARHDR
RLRRAAAATAAAAG
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mRNA from alignment at P-wetherbeei_contig8002:136..1859-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8002.1.1 ID=mRNA_P-wetherbeei_contig8002.1.1|Name=mRNA_P-wetherbeei_contig8002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1724bp|location=Sequence derived from alignment at P-wetherbeei_contig8002:136..1859- (Phaeothamnion wetherbeei SAG_119_79)
CAGAGAAGAGAAAAAGGGGAAACGGGGGAGGAGACGCAGGTGTCCAGGCC
ACGCAGTTCCAGCTTCAAGTCGAGGAAAATCACGGGATTCGCCGCCTAAG
AAGTCAGACCAGTCGAATCCCAAAACCAGTTTCCCCCGACCTCACGTTTC
GCTCAAGGCCTTAGCCGCCGGCGAACATCCCCATGGGGAAAGGAAAGGGC
AAAGCGAAGTCCAACCGCAAAAGCAAAGGCAAAGGCAAGGGGAGAAAGGG
CGGGAAGCTCACATGGGGAGAGAAGGTTGAGAGCGCAAGCTCCAACGAGG
ATGAGTTCGTGCGGAAGTCCAGGAAGCGGCCTCGCCAGGAGACCCAGGAG
ATTCAGGACAAAGAGCGTCGCTTGAAGCTGCTCTGCGCCGTCCGGGAACG
CAGCGACGACGTGCATCGCCGGCTTGCGCGTCCCAACCACAAGCCCGAGC
CGTCATTTTCGGCCGCAGTCTTAGAGCCCAAACCGAAGCCACGTCGGCCG
CGGCCGAGCAAGCCACGGCCAGGACGTAATGCGGCGAGAAGCTTGCGCCG
AGGGCAGGTGGCGGACGCGGCCGATGAGAAGGAGGAGACTGGCAAAAACA
TCGGCGCTTACGAGCGGTTACTGGCCAGCATCGGCTCCCGCGGCCGCAGC
TTTGGCGGCGTGGAGCTGGCTGATCTCGTGGCGGTGCAGCAGCTGGACGA
AGCCGGCTACAACTACCTCGACGAGAGCAGCGACGCTGCATTGGACAATG
ACGACAGCGACGGCGACGGTGAGGAAGGCAACGAAGAGGAGAGCGGCAGC
GACGACGGCGGTGGCGTGAGCAATGATCAGCACGCCGCCGGCGTCAACGG
AAACGGAGCTGCGGGCGCCGATACGGACGATGGAGACGATGATGACGACG
ACGATGGTGTGACCAGCCATGACGACGGCGACGACGATGGCAATGGCGGC
GGCAGCAGCGGCGGCGATGCAATCGGTAATAGAGAAGGTTCTTCCGCTGT
TGCAAATGGTGCCGCTGACGACAACGGCACCAGTGGCAACGGATTTATCT
CGGATGGATCTGATAGTGACATGGACAGTCTTGTCGGCACCGCCGCCGAC
CCCGCCGCGGCCGTCACTGCCGCCGGATCGGCGGACCCATACCTGCGCCG
CTTCGTGCTGACACGGCCGCTCCCGGAAGACGAAGCGGAGCGGCGGCTGC
TGCCGTCTGCCCGGCCCGCCTATGTCACCGTGGCCGGCGGTGGAACTGCC
GGAGCCGCTTCGACGCCGGCGGCGAAGGCGTGGGTGGACCTCGGGCTAGC
GCTGGAGGCCTGCGGCACCGCCACGGTCCCGCCGCCGCTGTCCGACGGCG
CCGAGGCGCTCGAGCGGGAGTGGCACGTGCGACCGACGTTGTCCCGCGGT
TTTGTCGCAGCCAACGCGGCCGCTGCCGCCAAGGCAGTCGCTAGCGACGA
GGAGTCGGCGGCGGACGCCGCGGCTACGCCGGGTACCGACCGGGCGATGT
CGCGTACCGACGGGGCCATGACGCCGACGCAGGCGCTGCTGCTGCCGCCG
TTGCTGGGCTACACGGACCTGCTGTACTCGGCGTGGACAATGGCGGAAGA
CGGCGGGATCCGGCGGGCGTACGCGCTGCACGTGCTCAACCACGTCCTCA
AGACGCGCGACCGCATCGCCCGCCACGACCGTCGGTTGCGCCGCGCCGCG
GCTGCCACGGCCGCGGCCGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8002:136..1859-

>mRNA_P-wetherbeei_contig8002.1.1 ID=mRNA_P-wetherbeei_contig8002.1.1|Name=mRNA_P-wetherbeei_contig8002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1542bp|location=Sequence derived from alignment at P-wetherbeei_contig8002:136..1859- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGAAAGGAAAGGGCAAAGCGAAGTCCAACCGCAAAAGCAAAGGCAA
AGGCAAGGGGAGAAAGGGCGGGAAGCTCACATGGGGAGAGAAGGTTGAGA
GCGCAAGCTCCAACGAGGATGAGTTCGTGCGGAAGTCCAGGAAGCGGCCT
CGCCAGGAGACCCAGGAGATTCAGGACAAAGAGCGTCGCTTGAAGCTGCT
CTGCGCCGTCCGGGAACGCAGCGACGACGTGCATCGCCGGCTTGCGCGTC
CCAACCACAAGCCCGAGCCGTCATTTTCGGCCGCAGTCTTAGAGCCCAAA
CCGAAGCCACGTCGGCCGCGGCCGAGCAAGCCACGGCCAGGACGTAATGC
GGCGAGAAGCTTGCGCCGAGGGCAGGTGGCGGACGCGGCCGATGAGAAGG
AGGAGACTGGCAAAAACATCGGCGCTTACGAGCGGTTACTGGCCAGCATC
GGCTCCCGCGGCCGCAGCTTTGGCGGCGTGGAGCTGGCTGATCTCGTGGC
GGTGCAGCAGCTGGACGAAGCCGGCTACAACTACCTCGACGAGAGCAGCG
ACGCTGCATTGGACAATGACGACAGCGACGGCGACGGTGAGGAAGGCAAC
GAAGAGGAGAGCGGCAGCGACGACGGCGGTGGCGTGAGCAATGATCAGCA
CGCCGCCGGCGTCAACGGAAACGGAGCTGCGGGCGCCGATACGGACGATG
GAGACGATGATGACGACGACGATGGTGTGACCAGCCATGACGACGGCGAC
GACGATGGCAATGGCGGCGGCAGCAGCGGCGGCGATGCAATCGGTAATAG
AGAAGGTTCTTCCGCTGTTGCAAATGGTGCCGCTGACGACAACGGCACCA
GTGGCAACGGATTTATCTCGGATGGATCTGATAGTGACATGGACAGTCTT
GTCGGCACCGCCGCCGACCCCGCCGCGGCCGTCACTGCCGCCGGATCGGC
GGACCCATACCTGCGCCGCTTCGTGCTGACACGGCCGCTCCCGGAAGACG
AAGCGGAGCGGCGGCTGCTGCCGTCTGCCCGGCCCGCCTATGTCACCGTG
GCCGGCGGTGGAACTGCCGGAGCCGCTTCGACGCCGGCGGCGAAGGCGTG
GGTGGACCTCGGGCTAGCGCTGGAGGCCTGCGGCACCGCCACGGTCCCGC
CGCCGCTGTCCGACGGCGCCGAGGCGCTCGAGCGGGAGTGGCACGTGCGA
CCGACGTTGTCCCGCGGTTTTGTCGCAGCCAACGCGGCCGCTGCCGCCAA
GGCAGTCGCTAGCGACGAGGAGTCGGCGGCGGACGCCGCGGCTACGCCGG
GTACCGACCGGGCGATGTCGCGTACCGACGGGGCCATGACGCCGACGCAG
GCGCTGCTGCTGCCGCCGTTGCTGGGCTACACGGACCTGCTGTACTCGGC
GTGGACAATGGCGGAAGACGGCGGGATCCGGCGGGCGTACGCGCTGCACG
TGCTCAACCACGTCCTCAAGACGCGCGACCGCATCGCCCGCCACGACCGT
CGGTTGCGCCGCGCCGCGGCTGCCACGGCCGCGGCCGCCGGC
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