mRNA_P-wetherbeei_contig7997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7997.1.1
Unique NamemRNA_P-wetherbeei_contig7997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: A0A835Z085_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z085_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.690e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    7 AEQAQMDAVLSDAGLRTLLMDPELQAVLQDCGRPGRLAYYMTQRPDIAAKIRRLADAGLVQLQ 195
            A  A +  +L+D GLR LL+DP +Q VLQ+C  PGRL +Y    P+   KIRRLA AGLVQ+Q
Sbjct:  146 AADADVARILADEGLRELLVDPGMQTVLQECSAPGRLRHYAAH-PEWGPKIRRLAQAGLVQIQ 207
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: A0A7S2FPN2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPN2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.500e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 EQAQMDAVLSDAGLRTLLMDPELQAVLQDCGRPGRLAYYMTQRPDIAAKIRRLADAGLVQLQS 198
            +Q Q+D V+ D  +R LLMDPE+Q V+  C +PG L  YM   P    +IR+LA +GLVQ+Q+
Sbjct:   51 DQTQVDKVMQDEEMRALLMDPEMQQVMITCQQPGALQKYMVD-PLWGPRIRKLAQSGLVQIQT 112
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: A0A6G0XYI5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYI5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 9.900e-6
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   10 EQAQMDAVLSDAGLRTLLMDPELQAVLQDCGRPGRLAYYMTQRPDIAAKIRRLADAGLVQL 192
            E AQ+  +L+D  L  +L DP +Q VL  C +P  L  YM        KIR+LADAGLVQL
Sbjct:  211 EDAQVQRILADPELMDILGDPAMQQVLHACQKPCALRSYMNDAI-YGPKIRKLADAGLVQL 270
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: A0A7S3M062_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M062_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 2.500e-5
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   10 EQAQMDAVLSDAGLRTLLMDPELQAVLQDCGRPGRLAYYMTQRPDIAAKIRRLADAGL 183
            E+ ++  +L D  LRT+LMDP+LQ +L +CG P +   +M + P+   KI +L   GL
Sbjct:   48 EEERVKQILQDDELRTMLMDPDLQRILMECGDPVKFQQHM-RNPETYRKIVKLQKVGL 104
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: A0A7S2PYS5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYS5_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 4.120e-5
Identity = 23/65 (35.38%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   10 EQAQMDAVLSDAGLRTLLMDPELQAVLQDC----GRPGRLAYYMTQRPDIAAKIRRLADAGLVQL 192
            +  ++  +LS+  LR++L+DP++Q V+++C    G  G+L YYM    D   K+R L +AGL+++
Sbjct:   48 DDEEVTKILSNDALRSILLDPKMQQVMEECASDGGGAGKLRYYM-MHDDFGPKLRVLMNAGLLKV 111
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BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Match: B8LEM9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEM9_THAPS)

HSP 1 Score: 48.1 bits (113), Expect = 1.000e-4
Identity = 23/64 (35.94%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 TAAEQAQMDAVLSDAGLRTLLMDPELQAVLQDC-GRPGRLAYYMTQRPDIAAKIRRLADAGLVQ 189
            T A   Q+ ++L++  LR++L+DP++Q ++Q+C  + G+L YYM +  +   K+R+L +AGL++
Sbjct:  419 TNAMDDQVASILANDDLRSILLDPKMQQIMQECTSQDGKLHYYM-RHEEYGPKLRKLMEAGLLK 481
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z085_9STRA5.690e-1253.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FPN2_9STRA4.500e-1047.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XYI5_9STRA9.900e-647.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3M062_9STRA2.500e-539.66Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2PYS5_9STRA4.120e-535.38Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8LEM9_THAPS1.000e-435.94Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7997contigP-wetherbeei_contig7997:2531..2731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC77
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.25e-08
EggNOG OGs2C2DM@1|root,2S2RK@2759|Eukaryota
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.9486523-CDS-P-wetherbeei_contig7997:2530..27101683187013.9486523-CDS-P-wetherbeei_contig7997:2530..2710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7997 2531..2710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.9641972-UTR-P-wetherbeei_contig7997:2710..27311683187013.9641972-UTR-P-wetherbeei_contig7997:2710..2731Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7997 2711..2731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7997.1.1prot_P-wetherbeei_contig7997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7997 2531..2710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7997.1.1

>prot_P-wetherbeei_contig7997.1.1 ID=prot_P-wetherbeei_contig7997.1.1|Name=mRNA_P-wetherbeei_contig7997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MDAVLSDAGLRTLLMDPELQAVLQDCGRPGRLAYYMTQRPDIAAKIRRLA
DAGLVQLQS*
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mRNA from alignment at P-wetherbeei_contig7997:2531..2731-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7997.1.1 ID=mRNA_P-wetherbeei_contig7997.1.1|Name=mRNA_P-wetherbeei_contig7997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig7997:2531..2731- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCGGCCGAGCAGGCGCAGATGGACGCCGTCCTGTCCGACGCCGGGCT
GCGGACACTGCTGATGGATCCGGAGCTGCAGGCGGTGCTGCAGGACTGCG
GCCGGCCGGGCCGCCTCGCCTACTACATGACGCAGCGGCCGGACATCGCG
GCCAAGATACGGCGGCTGGCTGACGCGGGCCTCGTCCAGCTGCAGTCCTA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7997:2531..2731-

>mRNA_P-wetherbeei_contig7997.1.1 ID=mRNA_P-wetherbeei_contig7997.1.1|Name=mRNA_P-wetherbeei_contig7997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig7997:2531..2731- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCGTCCTGTCCGACGCCGGGCTGCGGACACTGCTGATGGATCC
GGAGCTGCAGGCGGTGCTGCAGGACTGCGGCCGGCCGGGCCGCCTCGCCT
ACTACATGACGCAGCGGCCGGACATCGCGGCCAAGATACGGCGGCTGGCT
GACGCGGGCCTCGTCCAGCTGCAGTCCTAG
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