mRNA_P-wetherbeei_contig7994.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7994.3.1
Unique NamemRNA_P-wetherbeei_contig7994.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7994.3.1 vs. uniprot
Match: A0A6H5KFS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.070e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  314 VALHEACKSSLRADCLSKLRSLNQRQRRASRIEGGATCCYLLCGLPLAAMP 466
            V+++E+C +S++ D L +LR LNQ QRRA+R++  A CCY +C +PLA  P
Sbjct:  316 VSVNESCCASVKTDLLRRLRRLNQGQRRATRVDADARCCYGMCLMPLAGPP 366
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7994.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFS4_9PHAE6.070e-649.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7994contigP-wetherbeei_contig7994:1737..2782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1046
Hectar predicted targeting categorysignal anchor
Exons1
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.6977816-UTR-P-wetherbeei_contig7994:1736..17711683187013.6977816-UTR-P-wetherbeei_contig7994:1736..1771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7994 1737..1771 +
1683187013.7229779-UTR-P-wetherbeei_contig7994:2593..27821683187013.7229779-UTR-P-wetherbeei_contig7994:2593..2782Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7994 2594..2782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.7113676-CDS-P-wetherbeei_contig7994:1771..25931683187013.7113676-CDS-P-wetherbeei_contig7994:1771..2593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7994 1772..2593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7994.3.1prot_P-wetherbeei_contig7994.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7994 1772..2593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7994.3.1

>prot_P-wetherbeei_contig7994.3.1 ID=prot_P-wetherbeei_contig7994.3.1|Name=mRNA_P-wetherbeei_contig7994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MALPVSFARCSTVCKRPLRTAVANRAGFGESCREVLLWFLWPMMLVPVAM
MGETSSRCFTRWTFLLTFPFNPIASGGRYFLFFGCCDAANPVRWRCTKRA
SRRCEPTASPSCGRSTSGSAAPLASRAAPPAATCCAACRWRPCRRDRIRR
VAAAQGAAERWQRLQRLRRQEERERRRQHWLKGAGRASAAALGLGRGFTS
LPAGTDSMDSAWCWGRRTGHRPEEALSPGHAGQWWTAPPALGAGDSGGAR
DTKRRKIKRLARHRKEVGQENYC*
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mRNA from alignment at P-wetherbeei_contig7994:1737..2782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7994.3.1 ID=mRNA_P-wetherbeei_contig7994.3.1|Name=mRNA_P-wetherbeei_contig7994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1046bp|location=Sequence derived from alignment at P-wetherbeei_contig7994:1737..2782+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGACGCACCGCCGTTTGTGTTTGGACTCGCCAATGGCTCTGCCAGTT
TCCTTTGCACGTTGCTCTACCGTTTGCAAGCGGCCTCTGCGTACCGCGGT
TGCGAACCGGGCTGGTTTTGGCGAGAGCTGCAGAGAGGTTTTGCTATGGT
TCCTTTGGCCAATGATGCTGGTGCCTGTGGCGATGATGGGGGAAACAAGC
TCGAGATGTTTCACACGTTGGACCTTTCTCCTCACATTTCCCTTCAACCC
TATTGCATCTGGCGGTCGCTACTTTTTGTTTTTCGGCTGCTGCGACGCGG
CCAACCCCGTTAGGTGGCGCTGCACGAAGCGTGCAAGTCGTCGTTGCGAG
CCGACTGCCTCTCCAAGCTGCGGTCGCTCAACCAGCGGCAGCGCCGCGCC
TCTCGCATCGAGGGCGGCGCCACCTGCTGCTACCTGCTGTGCGGCCTGCC
GCTGGCGGCCATGCCGCCGGGATCGCATCCGGCGCGTGGCGGCGGCGCAA
GGCGCGGCAGAGCGGTGGCAGCGGCTGCAGCGGCTACGACGTCAGGAGGA
GCGGGAACGGCGGCGACAGCATTGGCTGAAAGGGGCTGGGCGGGCGTCGG
CGGCGGCGTTGGGATTGGGCCGGGGGTTTACGTCTTTGCCTGCGGGCACG
GATTCCATGGACAGTGCCTGGTGTTGGGGGCGGCGGACGGGGCATCGCCC
GGAGGAGGCGTTAAGCCCGGGGCACGCGGGGCAATGGTGGACTGCCCCAC
CTGCGCTCGGAGCGGGCGACAGCGGGGGCGCACGGGATACTAAGCGCCGA
AAGATCAAACGATTGGCCCGGCATCGAAAGGAGGTAGGACAAGAAAATTA
TTGCTGAAAACAAAAAGCTGGCCGGAGCAAAGATGGGTGGCATATTATCT
GTAAAAAGTGTAATGGAGACAGATTGGCGGGGAGCCGGGCGCTCTACTCG
GTGTCTGCAAAGCAAGCGGGCAGACGGTGAAAATCGACCGAGAGAGCAAA
GGTGGACAAAACCTGAGCCGCGGATTTACAGAGGAACAAACAAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7994:1737..2782+

>mRNA_P-wetherbeei_contig7994.3.1 ID=mRNA_P-wetherbeei_contig7994.3.1|Name=mRNA_P-wetherbeei_contig7994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig7994:1737..2782+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCTGCCAGTTTCCTTTGCACGTTGCTCTACCGTTTGCAAGCGGCC
TCTGCGTACCGCGGTTGCGAACCGGGCTGGTTTTGGCGAGAGCTGCAGAG
AGGTTTTGCTATGGTTCCTTTGGCCAATGATGCTGGTGCCTGTGGCGATG
ATGGGGGAAACAAGCTCGAGATGTTTCACACGTTGGACCTTTCTCCTCAC
ATTTCCCTTCAACCCTATTGCATCTGGCGGTCGCTACTTTTTGTTTTTCG
GCTGCTGCGACGCGGCCAACCCCGTTAGGTGGCGCTGCACGAAGCGTGCA
AGTCGTCGTTGCGAGCCGACTGCCTCTCCAAGCTGCGGTCGCTCAACCAG
CGGCAGCGCCGCGCCTCTCGCATCGAGGGCGGCGCCACCTGCTGCTACCT
GCTGTGCGGCCTGCCGCTGGCGGCCATGCCGCCGGGATCGCATCCGGCGC
GTGGCGGCGGCGCAAGGCGCGGCAGAGCGGTGGCAGCGGCTGCAGCGGCT
ACGACGTCAGGAGGAGCGGGAACGGCGGCGACAGCATTGGCTGAAAGGGG
CTGGGCGGGCGTCGGCGGCGGCGTTGGGATTGGGCCGGGGGTTTACGTCT
TTGCCTGCGGGCACGGATTCCATGGACAGTGCCTGGTGTTGGGGGCGGCG
GACGGGGCATCGCCCGGAGGAGGCGTTAAGCCCGGGGCACGCGGGGCAAT
GGTGGACTGCCCCACCTGCGCTCGGAGCGGGCGACAGCGGGGGCGCACGG
GATACTAAGCGCCGAAAGATCAAACGATTGGCCCGGCATCGAAAGGAGGT
AGGACAAGAAAATTATTGCTGA
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