mRNA_P-wetherbeei_contig7993.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7993.1.1
Unique NamemRNA_P-wetherbeei_contig7993.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7993.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7993contigP-wetherbeei_contig7993:825..2696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1872
Hectar predicted targeting categoryother localisation
Exons1
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.6423492-UTR-P-wetherbeei_contig7993:824..10311683187013.6423492-UTR-P-wetherbeei_contig7993:824..1031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7993 825..1031 -
1683187013.6639888-UTR-P-wetherbeei_contig7993:2066..26961683187013.6639888-UTR-P-wetherbeei_contig7993:2066..2696Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7993 2067..2696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.6533794-CDS-P-wetherbeei_contig7993:1031..20661683187013.6533794-CDS-P-wetherbeei_contig7993:1031..2066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7993 1032..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7993.1.1prot_P-wetherbeei_contig7993.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7993 1032..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7993.1.1

>prot_P-wetherbeei_contig7993.1.1 ID=prot_P-wetherbeei_contig7993.1.1|Name=mRNA_P-wetherbeei_contig7993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
MAVAGHSAAAGRSTAERSVTAEAGQQREPVAGAAGMASDGLGSLTVSPLL
APFRKLLPLRPLPSPASPLPPSGAGAASRGGGVPQPPRSPPPLPASVWDS
PSSPVAARDRESTDQSDASAVASAPFPPRPHRFNSDDLGRLWDTTAPLSD
TTTPQRPTAIKAFPTAVAAAAAVETAAAATAPAGAAAALAPFPAAAAASS
ATVNAAANYAKGARASGQGGAAAVATAVAAEAPGPAAELRAVLAGVAALE
LALRLVLRCQRLLKDVSDLEFSDLDLLAGFGDYDDNDDDYGSGTAAAGED
NWVAAAAVTGATAAFAAGDASRAVVAADAAHAAGWRSARQGQEG*
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mRNA from alignment at P-wetherbeei_contig7993:825..2696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7993.1.1 ID=mRNA_P-wetherbeei_contig7993.1.1|Name=mRNA_P-wetherbeei_contig7993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1872bp|location=Sequence derived from alignment at P-wetherbeei_contig7993:825..2696- (Phaeothamnion wetherbeei SAG_119_79)
GATTGTGCCGGCGGTGCCCGGCCGACCGCTACGGCGCCGTGCTGCGGGAC
GTGCGGCGCATGTTCATCGTCGTCTGCATGCTCTGCCCGTGAGTTTCTTT
ATTTCAGTTTTGGCTGCGGTGGGTGGGATGGCGCGTGTCGCCTTCCGCAA
GCACCGGTCACCCACTTTTCTACCGGATGTTCTTAGTTTCCAAGTGATCA
CTTCTCTCTTCTACATTTGGCCGAGGTACGAACTGGTTTTTCCCAGCGTG
TCGGCAAGGGTTCCCGTTTGGCTGCCGCTGTCCCACTCTGGAGCCGCCCA
TTTCAACAAGTATTCCAGGCTGCGAACTGTTGACCCGCCCAATCCTCTCC
TACTTTTCGGGAATGCAGCTACGTCCGCCACGACGTGTTTGTCCTCCGGT
GGGGTATCGCGCTGCCGGCAGCCGTTCGCGACGCGGTCGATGGCGTCGCT
ATCGTGCTGGAGCGTCTCGCGGTCGCCTTCCGCCGCCACCGCACGGCGCT
TCCAGCGCAGCTGTTACGGCGGGTGCAGGCGCTCCATGCGCGTCAGCTCG
ACGCCATCGTCGCCAACGTCGCTGCGAATCTGGCGGCGCTGCAGGCCGCT
GTAGCGTTGGCTGCGACTGCGGCGCCGGCGATGGCCGTGGCTGGGCATTC
GGCGGCGGCTGGACGGTCGACTGCTGAGCGGTCGGTGACGGCGGAGGCGG
GACAGCAGCGGGAACCGGTGGCAGGAGCGGCAGGAATGGCTTCGGATGGG
TTGGGCTCTCTGACGGTGTCCCCGCTGCTGGCGCCGTTCAGAAAGCTACT
GCCGCTGCGACCGCTGCCGTCGCCGGCATCGCCGTTGCCGCCGTCCGGTG
CTGGAGCGGCGAGCCGTGGCGGCGGCGTGCCGCAGCCGCCGCGCTCGCCG
CCGCCACTGCCGGCATCGGTGTGGGATTCGCCGTCGTCGCCGGTGGCCGC
TCGCGACCGGGAGTCGACAGACCAATCAGACGCTTCCGCTGTCGCGTCAG
CCCCGTTCCCGCCGCGGCCGCACCGCTTCAACAGCGACGACTTGGGCCGC
CTCTGGGATACGACAGCGCCATTGTCGGACACCACCACCCCGCAGCGGCC
GACGGCAATAAAGGCGTTTCCCACGGCTGTGGCGGCAGCGGCAGCAGTGG
AGACAGCCGCGGCGGCCACGGCTCCGGCTGGGGCCGCAGCAGCGCTGGCA
CCTTTTCCTGCAGCGGCGGCGGCATCATCGGCGACGGTGAATGCGGCTGC
AAACTACGCCAAGGGCGCTCGCGCGTCGGGCCAAGGGGGTGCGGCGGCGG
TGGCGACGGCAGTTGCGGCGGAGGCGCCGGGACCGGCGGCGGAGCTGCGG
GCGGTGCTGGCGGGCGTAGCAGCGCTGGAGCTAGCTTTGCGGCTGGTGCT
GCGCTGCCAGCGGCTGCTAAAAGACGTCAGCGACCTCGAGTTCAGCGATT
TGGACCTCCTCGCCGGCTTCGGCGACTACGACGACAACGACGACGACTAT
GGCAGCGGCACTGCGGCCGCTGGCGAAGACAACTGGGTCGCTGCCGCCGC
TGTCACCGGTGCCACGGCCGCCTTCGCTGCCGGCGACGCGTCCCGTGCCG
TCGTGGCTGCCGACGCGGCGCATGCTGCCGGCTGGCGAAGCGCCCGCCAG
GGACAAGAGGGTTGAGAGGCGAGCGAAGGAGCGGCTGTCGAGTTGGGCCA
GGCGTGGTCCAATTGATGCCGTTTCCGGTTATTCCGAAAAGAACACTGTC
TAGCTTTTGTGGGGGCGTAGGTTAACCATCGCTGAACGTCGGAAGGGCCC
ATGGAAGCAACTACAAGAGCGGGACTTTGGGTTTACTTTCCTTGCAGATC
ATCACACCCTCCTAATCACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7993:825..2696-

>mRNA_P-wetherbeei_contig7993.1.1 ID=mRNA_P-wetherbeei_contig7993.1.1|Name=mRNA_P-wetherbeei_contig7993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig7993:825..2696- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTGGCTGGGCATTCGGCGGCGGCTGGACGGTCGACTGCTGAGCG
GTCGGTGACGGCGGAGGCGGGACAGCAGCGGGAACCGGTGGCAGGAGCGG
CAGGAATGGCTTCGGATGGGTTGGGCTCTCTGACGGTGTCCCCGCTGCTG
GCGCCGTTCAGAAAGCTACTGCCGCTGCGACCGCTGCCGTCGCCGGCATC
GCCGTTGCCGCCGTCCGGTGCTGGAGCGGCGAGCCGTGGCGGCGGCGTGC
CGCAGCCGCCGCGCTCGCCGCCGCCACTGCCGGCATCGGTGTGGGATTCG
CCGTCGTCGCCGGTGGCCGCTCGCGACCGGGAGTCGACAGACCAATCAGA
CGCTTCCGCTGTCGCGTCAGCCCCGTTCCCGCCGCGGCCGCACCGCTTCA
ACAGCGACGACTTGGGCCGCCTCTGGGATACGACAGCGCCATTGTCGGAC
ACCACCACCCCGCAGCGGCCGACGGCAATAAAGGCGTTTCCCACGGCTGT
GGCGGCAGCGGCAGCAGTGGAGACAGCCGCGGCGGCCACGGCTCCGGCTG
GGGCCGCAGCAGCGCTGGCACCTTTTCCTGCAGCGGCGGCGGCATCATCG
GCGACGGTGAATGCGGCTGCAAACTACGCCAAGGGCGCTCGCGCGTCGGG
CCAAGGGGGTGCGGCGGCGGTGGCGACGGCAGTTGCGGCGGAGGCGCCGG
GACCGGCGGCGGAGCTGCGGGCGGTGCTGGCGGGCGTAGCAGCGCTGGAG
CTAGCTTTGCGGCTGGTGCTGCGCTGCCAGCGGCTGCTAAAAGACGTCAG
CGACCTCGAGTTCAGCGATTTGGACCTCCTCGCCGGCTTCGGCGACTACG
ACGACAACGACGACGACTATGGCAGCGGCACTGCGGCCGCTGGCGAAGAC
AACTGGGTCGCTGCCGCCGCTGTCACCGGTGCCACGGCCGCCTTCGCTGC
CGGCGACGCGTCCCGTGCCGTCGTGGCTGCCGACGCGGCGCATGCTGCCG
GCTGGCGAAGCGCCCGCCAGGGACAAGAGGGTTGA
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