mRNA_P-wetherbeei_contig7990.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7990.1.1
Unique NamemRNA_P-wetherbeei_contig7990.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: B7G9A5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A5_PHATC)

HSP 1 Score: 78.2 bits (191), Expect = 4.650e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRK 611
            +A  + GR  KQCRER+VN+LDP+L  GEWT DE+  L+AM   H   WA+I + L GR+ N VKN  +  +QRK
Sbjct:   26 IAAFLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHEHHGNRWANIAKNLPGRSDNDVKNHWYSTIQRK 100
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRK 611
            +A  + GR  KQCRER+VN+LDP+L  GEWT DE+  L+AM   H   WA+I + L GR+ N VKN  +  +QRK
Sbjct:   57 IAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWYSTIQRK 131
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-14
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNRFGLLQRK 611
            VA  M GR +KQCRERY+N+LDP+L  G WT +E+  L+ +       WA+I R L GR+ N VKNR+ L+QR+
Sbjct:   45 VARSMPGRVAKQCRERYLNHLDPKLQRGPWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRR 118
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.270e-14
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:  387 QVAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNRFGLLQRK 611
            Q+   M GR  KQCRERY+N+LDP L    WT +ED  L  + +     WADI R + GR  N VKNR+ L+QR+
Sbjct:   80 QICMHMPGRVGKQCRERYLNHLDPSLKKTPWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A1Z5KJ42_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ42_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 8.150e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRK 611
            +A+ + GR  KQCRER+VN+LDP+L  GEWT DE+  L+AM   H   WA+I + L GR+ N VKN  +  +QRK
Sbjct:  243 IAQHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHEHHGNRWANISKQLPGRSDNDVKNHWYSTIQRK 317
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A835Z4W2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.770e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  387 QVAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNRFGLLQRK 611
            ++++ + GR +KQCRERY+N+LDP L    WT +E+  LVA   +    WA++ R   GR+ N VKNR+ LL+R+
Sbjct:    3 EISKHLPGRDAKQCRERYINHLDPSLRKAPWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 77
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: D7FTK3_ECTSI (Myb-like DNA-binding domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.490e-13
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNRFGLLQRKHDDGSAERQRGSRRPAHV 665
            VA+ M GRT KQCRERY NYL   LN+G WT++ED  L++M +     WA+I R L  R+ N++KN +  L R   D +A ++R   R AH+
Sbjct:  146 VAKLMGGRTYKQCRERYTNYLKEGLNVGPWTKEEDQLLLSMHAKVGNKWAEIARYLKDRSENMIKNEYMKLSR---DANASQRR---RQAHI 231
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A7S4A947_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A947_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.530e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRKHDDGSAER 635
            +A  + GR  KQCRER+VN+LDP+L  GEWT DE+  L+AM   H   WA+I + L GR+ N VKN  +  +QRK      E+
Sbjct:  218 IAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHEHHGNRWANISKQLPGRSDNDVKNHWYSTIQRKFQQHGKEK 300
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BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A7S4R1F3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R1F3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.030e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRK 611
            +A  + GR  KQCRER+VN+LDP+L  GEWT DE+  L+A+   H   WA+I + L+GR+ N VKN  +  +QRK
Sbjct:  369 IAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIALHEHHGNRWANISKQLHGRSDNDVKNHWYSTIQRK 443
[Close]
BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Match: A0A7S4VSH2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VSH2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.390e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  390 VAEKMAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGRALNGRAANVVKNR-FGLLQRK 611
            +A  + GR  KQCRER+VN+LDP+L  GEWT DE+  L+A+   H   WA+I + L+GR+ N VKN  +  +QRK
Sbjct:  369 IAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIALHEHHGNRWANISKQLHGRSDNDVKNHWYSTIQRK 443
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7G9A5_PHATC4.650e-1550.67Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A1E7EVM5_9STRA1.040e-1450.67Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A836CND7_9STRA1.540e-1450.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YSH7_9STRA3.270e-1448.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A1Z5KJ42_FISSO8.150e-1450.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835Z4W2_9STRA9.770e-1444.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D7FTK3_ECTSI1.490e-1345.65Myb-like DNA-binding domain n=1 Tax=Ectocarpus sil... [more]
A0A7S4A947_9STRA1.530e-1346.99Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4R1F3_9STRA2.030e-1349.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VSH2_9STRA2.390e-1349.33Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7990contigP-wetherbeei_contig7990:689..1794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr15516
PFAMsMyb_DNA-binding
Model size718
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.35e-17
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,2XGTN@2836|Bacillariophyta
DescriptionMyb-like DNA-binding domain
Cds size315
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.5850055-UTR-P-wetherbeei_contig7990:688..10891683187013.5850055-UTR-P-wetherbeei_contig7990:688..1089Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7990 689..1089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.6039078-CDS-P-wetherbeei_contig7990:1089..12491683187013.6039078-CDS-P-wetherbeei_contig7990:1089..1249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7990 1090..1249 +
1683187013.6131787-CDS-P-wetherbeei_contig7990:1639..17941683187013.6131787-CDS-P-wetherbeei_contig7990:1639..1794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7990 1640..1794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7990.1.1prot_P-wetherbeei_contig7990.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7990 1090..1794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7990.1.1

>prot_P-wetherbeei_contig7990.1.1 ID=prot_P-wetherbeei_contig7990.1.1|Name=mRNA_P-wetherbeei_contig7990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MAGRTSKQCRERYVNYLDPQLNLGEWTRDEDLRLVAMRSDHKMGWADIGR
ALNGRAANVVKNRFGLLQRKHDDGSAERQRGSRRPAHVAAGDLWPALAAS
AGADR
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mRNA from alignment at P-wetherbeei_contig7990:689..1794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7990.1.1 ID=mRNA_P-wetherbeei_contig7990.1.1|Name=mRNA_P-wetherbeei_contig7990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig7990:689..1794+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTTGGGATCGTAGCCGCATCAGGCTGCGCATTTCTCTTTCCAGGAG
GTTTTACTTTTCTCCAAGCATTTTTGGCCAAGCCTTTAAGGTAGATTCGC
CTTATTCGCAGGGGGTGTCTAAGCTCGATATCGCGCGCCCGAGTGACTGT
CGCCACTACATTCTGCCACACCGCGGCTAATGCCGCCACCTCGTGTCTCT
CTCCTTCTCTCTGTCTCTCTTGTGGCGAGCGTTTTTGCTTTTCCAAGCGT
GCTCTCGTGCCCTCACCTCGTTGAATCCTCCCAATGCCTTCTCCGTCCCT
CTTTACCCCGTTTCCCTCCTTTTGTCTGCAAAACAACCCTAAAACATATG
GCAACAAATCAAACATGACAAATTCCTACCCGAACGCAGGTGGCGGAGAA
GATGGCGGGGCGCACCTCCAAGCAGTGCCGCGAACGCTACGTCAACTACT
TGGACCCGCAGCTCAACCTGGGTGAGTGGACGAGGGACGAGGATCTGCGG
CTCGTGGCCATGCGGAGCGACCACAAGATGGGCTGGGCCGACATCGGCCG
CGCCCTCAACGGTGAGTTTTGAAGAGCCATGTGGTCGGTTGTGGGCTCGG
CGGATTGTTTTGTGGTTTCCCAAGGAGACTGGCATAGACTTTACAGAACA
CCGGCCATTCCCTTTCCTTTCGGTATTCTTTCTGTATAACTGTCAAGCTA
GGAGCTCCTGCTGTTGTGCACGACTCCTTCTGTGCTATCCTTCCTACCTT
ACTTGTCCCCACCCGCCAGCCCCCCACCTTCGAGCTCGGAAACAAAATCC
GAAAAATCCGGAAAATCTTCGTGGATACCGAGACTCATGCGCTGAAACAA
CATTTATGCCTTTTAAACTCTGATGCGCTGCGAATGATTCTGATGCCTTC
GTATGATTCTGATGCCTTCGTAATCTTTTGATTTCGCTATACTTCTTGCA
GGCCGCGCTGCCAACGTGGTAAAGAACCGCTTCGGCCTGCTGCAGCGCAA
GCATGATGACGGCTCGGCGGAGCGCCAACGCGGCAGCCGTCGCCCGGCGC
ACGTCGCCGCCGGCGACCTGTGGCCGGCACTGGCTGCCTCCGCCGGCGCC
GACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7990:689..1794+

>mRNA_P-wetherbeei_contig7990.1.1 ID=mRNA_P-wetherbeei_contig7990.1.1|Name=mRNA_P-wetherbeei_contig7990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig7990:689..1794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGGGCGCACCTCCAAGCAGTGCCGCGAACGCTACGTCAACTACTT
GGACCCGCAGCTCAACCTGGGTGAGTGGACGAGGGACGAGGATCTGCGGC
TCGTGGCCATGCGGAGCGACCACAAGATGGGCTGGGCCGACATCGGCCGC
GCCCTCAACGGCCGCGCTGCCAACGTGGTAAAGAACCGCTTCGGCCTGCT
GCAGCGCAAGCATGATGACGGCTCGGCGGAGCGCCAACGCGGCAGCCGTC
GCCCGGCGCACGTCGCCGCCGGCGACCTGTGGCCGGCACTGGCTGCCTCC
GCCGGCGCCGACCGC
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