mRNA_P-wetherbeei_contig7986.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7986.2.1
Unique NamemRNA_P-wetherbeei_contig7986.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: A0A6H5L4W8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.480e-17
Identity = 76/237 (32.07%), Postives = 100/237 (42.19%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCKAPAEFVYVDMLSETSFKTIF---------------LPWP-----------------SEGVTT-----------GP--RAEIYRRGLRAQPPTPLALAPKPAAALRSWIDRDLLAAAPATATDWSVVAELA---LRAVTETCSFDDRQGRRGLEELLAPYLGETTASHFIHELQCFRWSPLRMEYYDTATVYERATNQ 568
            ICL  + D  S  +  C H++ + CL +WL     CP CK     V  ++ S   ++                  LP P                  EG              GP  R+ +YRRGL A+PP   A  PKP   LRSWI RD+ AAAP T  +  +   L    +RA+ +    D + G   ++E L  +L E TA  F+HEL CFRWS  RM  YD   VY     Q
Sbjct:   97 ICLGLVED--SAMIGSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHLAVKERGGGNAEGSLPSPPAAGGTAAETSGRGGGVDEGAGASWGAAVVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGTRGEGEMDTRLVEDIVRALLKENDVDTQDGYCTVKEQLQGFLFENTAP-FLHELWCFRWSKARMPAYDREAVYRPRPTQ 330
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: D7G117_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G117_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.450e-13
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 2 
Query:  209 TGP--RAEIYRRGLRAQPPTPLALAPKPAAALRSWIDRDLLAAAPAT----ATDWSVVAELALRAVTETCSFDDRQGRRGLEELLAPYLGETTASHFIHELQCFRWSPLRMEYYDTATVYERATNQ 568
            TGP  R+ +YRRGL A+PP   A  PKP   LRSWI RD+ AAAP T      D  +V ++ +RA+ +    D + G   ++E    +L E TA  F+HEL CFRWS  RM  YD   VY     Q
Sbjct:   87 TGPEFRSLVYRRGLAAEPPAEKARRPKPLDQLRSWIARDVQAAAPGTRGGGGMDTRLVEDI-VRALLKDNDVDTQDGYCTVKE--QGFLFENTAP-FLHELWCFRWSKARMPAYDRRAVYRPRPTQ 208
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: A0A813ITA9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813ITA9_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 4.700e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCKAPAE 133
            ICL E++DP+S+ALLPC HVF   CLR  +A ++ CP C    E
Sbjct:  444 ICLDEMDDPRSLALLPCAHVFHSSCLRDVIAQRSKCPHCNLRVE 487
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: A0A813G6X1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6X1_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 5.310e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCKAPAE 133
            ICL E++DP+S+ALLPC HVF   CLR  +A ++ CP C    E
Sbjct:  848 ICLDEMDDPRSLALLPCAHVFHSSCLRDVIAQRSKCPHCNLRVE 891
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: A0A813G247_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G247_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 5.980e-5
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCKAPAE 133
            ICL E++D +S+ALLPC HVF   CLR  +A  + CP C    E
Sbjct:   71 ICLDEMDDARSLALLPCAHVFHSSCLRAVIAQHSKCPHCNLRVE 114
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: D7LAU5_ARALL (RING-type domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7LAU5_ARALL)

HSP 1 Score: 53.9 bits (128), Expect = 8.380e-5
Identity = 17/40 (42.50%), Postives = 26/40 (65.00%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCK 121
            ICL+E    K + +LPCGH+FD +C+  W ++   CP C+
Sbjct:  164 ICLEEFTTGKRLVILPCGHLFDAFCVADWFSINHVCPLCR 203
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BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Match: A0A813GRV6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GRV6_POLGL)

HSP 1 Score: 55.8 bits (133), Expect = 9.020e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:    2 ICLQELNDPKSVALLPCGHVFDRYCLRQWLAVQAACPTCKAPAE 133
            ICL E++DP+S+ALLPC HVF   CLR  +A  + CP C    E
Sbjct:  814 ICLDEMDDPRSLALLPCAHVFHSSCLRAVIAQHSKCPHCNLRVE 857
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7986.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L4W8_9PHAE5.480e-1732.07RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G117_ECTSI2.450e-1343.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813ITA9_POLGL4.700e-552.27Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813G6X1_POLGL5.310e-552.27Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813G247_POLGL5.980e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D7LAU5_ARALL8.380e-542.50RING-type domain-containing protein n=1 Tax=Arabid... [more]
A0A813GRV6_POLGL9.020e-552.27Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7986contigP-wetherbeei_contig7986:1808..2925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5786.XP_003293988.1
PFAMsPWI,zf-C3HC4
Model size1118
Max annot lvl554915|Amoebozoa
KEGG koko:K10631
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000474
EggNOG OGsKOG4430@1|root,KOG4430@2759|Eukaryota,3XEBZ@554915|Amoebozoa
EC2.3.2.27
DescriptionPWI domain
Cds size462
COG categoryO
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.4312394-UTR-P-wetherbeei_contig7986:1807..23151683187013.4312394-UTR-P-wetherbeei_contig7986:1807..2315Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7986 1808..2315 -
1683187013.4546406-UTR-P-wetherbeei_contig7986:2777..29251683187013.4546406-UTR-P-wetherbeei_contig7986:2777..2925Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7986 2778..2925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.4439652-CDS-P-wetherbeei_contig7986:2315..27771683187013.4439652-CDS-P-wetherbeei_contig7986:2315..2777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7986 2316..2777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7986.2.1prot_P-wetherbeei_contig7986.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7986 2316..2777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7986.2.1

>prot_P-wetherbeei_contig7986.2.1 ID=prot_P-wetherbeei_contig7986.2.1|Name=mRNA_P-wetherbeei_contig7986.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MLSETSFKTIFLPWPSEGVTTGPRAEIYRRGLRAQPPTPLALAPKPAAAL
RSWIDRDLLAAAPATATDWSVVAELALRAVTETCSFDDRQGRRGLEELLA
PYLGETTASHFIHELQCFRWSPLRMEYYDTATVYERATNQPPDAGESSDR
PTA*
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mRNA from alignment at P-wetherbeei_contig7986:1808..2925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7986.2.1 ID=mRNA_P-wetherbeei_contig7986.2.1|Name=mRNA_P-wetherbeei_contig7986.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-wetherbeei_contig7986:1808..2925- (Phaeothamnion wetherbeei SAG_119_79)
GATTTGTTTGCAAGAATTGAACGACCCTAAGAGTGTCGCTCTCCTTCCGT
GCGGCCACGTCTTCGATCGCTACTGCCTGCGACAATGGCTTGCTGTTCAG
GCAGCGTGCCCCACGTGTAAAGCGCCAGCGGAATTTGTTTACGTCGACAT
GCTGAGCGAAACCAGCTTCAAAACGATCTTCTTGCCTTGGCCAAGCGAAG
GTGTGACAACTGGACCACGAGCAGAGATATACAGACGCGGCTTGCGAGCC
CAACCCCCAACACCTCTCGCGCTCGCTCCGAAACCGGCGGCTGCACTGCG
TTCCTGGATAGACCGCGACCTGTTGGCAGCCGCCCCTGCGACTGCAACGG
ATTGGAGCGTGGTAGCGGAGCTCGCATTGAGGGCCGTGACCGAGACATGC
TCGTTTGACGACCGGCAGGGACGGCGAGGCCTTGAGGAGCTCCTTGCGCC
TTACCTTGGCGAAACCACGGCGAGCCATTTCATCCACGAGTTGCAATGCT
TCCGCTGGAGTCCTCTGCGTATGGAGTATTACGATACAGCGACGGTCTAC
GAACGGGCGACAAATCAGCCTCCCGATGCGGGCGAGAGCAGCGATCGACC
AACGGCGTAACAAAAGTCGAAAAGGCCGCAAGATTCCGCGGATGCTGCAG
AACAGCCGGCAATCACAATTTTTTTGGAGAAGAGCCGAAGACTTCAATGG
ACTCCAGATCCTAGGAGAGCCAGACTTTAAGATCAACAATTCAGACATAG
CTTAATGGCGGGGCTGCCGCCAAAGCCGCCAGATCCTGGCTTTCCCGGCC
GTCCCACTCTCTCTGGCGGAAGACGGTGAAGAGGCCAAAGCCGCTGCCGC
GGTAATCGGAGCCGAACGCCTCTTCCCCGAGCGCGTAGTACTCGAAACCC
GCCTGGGAAAAGAGAGATGTGGCAGGTGGCAGCGGTCGGTTACGAACCGT
GATTTCGGAGTGGCCGGCTGCCAGTCAAGAACTGGCAGAGGCGAGGCAAG
GCAGTTCTCGACACTCCGGCCCTTTGGGGTTGGCCACAACATTACAAGCG
GAGGCACAAGACATTCAGCACAGCTCCCGCCTTCACTCTATGCGCGTAAA
TCGGTGCACTTTCCTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7986:1808..2925-

>mRNA_P-wetherbeei_contig7986.2.1 ID=mRNA_P-wetherbeei_contig7986.2.1|Name=mRNA_P-wetherbeei_contig7986.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig7986:1808..2925- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAGCGAAACCAGCTTCAAAACGATCTTCTTGCCTTGGCCAAGCGA
AGGTGTGACAACTGGACCACGAGCAGAGATATACAGACGCGGCTTGCGAG
CCCAACCCCCAACACCTCTCGCGCTCGCTCCGAAACCGGCGGCTGCACTG
CGTTCCTGGATAGACCGCGACCTGTTGGCAGCCGCCCCTGCGACTGCAAC
GGATTGGAGCGTGGTAGCGGAGCTCGCATTGAGGGCCGTGACCGAGACAT
GCTCGTTTGACGACCGGCAGGGACGGCGAGGCCTTGAGGAGCTCCTTGCG
CCTTACCTTGGCGAAACCACGGCGAGCCATTTCATCCACGAGTTGCAATG
CTTCCGCTGGAGTCCTCTGCGTATGGAGTATTACGATACAGCGACGGTCT
ACGAACGGGCGACAAATCAGCCTCCCGATGCGGGCGAGAGCAGCGATCGA
CCAACGGCGTAA
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