mRNA_P-wetherbeei_contig797.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig797.7.1
Unique NamemRNA_P-wetherbeei_contig797.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig797.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig797contigP-wetherbeei_contig797:2307..4341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1785
Hectar predicted targeting categoryother localisation
Exons2
Cds size957
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.4910252-UTR-P-wetherbeei_contig797:2306..30011683187012.4910252-UTR-P-wetherbeei_contig797:2306..3001Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig797 2307..3001 -
1683187012.5249007-UTR-P-wetherbeei_contig797:4208..43411683187012.5249007-UTR-P-wetherbeei_contig797:4208..4341Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig797 4209..4341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.502924-CDS-P-wetherbeei_contig797:3001..37331683187012.502924-CDS-P-wetherbeei_contig797:3001..3733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig797 3002..3733 -
1683187012.514226-CDS-P-wetherbeei_contig797:3983..42081683187012.514226-CDS-P-wetherbeei_contig797:3983..4208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig797 3984..4208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig797.7.1prot_P-wetherbeei_contig797.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig797 3002..4208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig797.7.1

>prot_P-wetherbeei_contig797.7.1 ID=prot_P-wetherbeei_contig797.7.1|Name=mRNA_P-wetherbeei_contig797.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
MASSTPGPQGRPLRAAGRRVHHGSPDVRVFEAGSTTGQYRQLSPASRREL
RFTNAPEGTLERQQEASEAQPVASEVIEGLSAEANKFLDFMFPPGSKGAV
DCHLPEYAFAVGKKGTPNREDGGIFIGGQTFKSMVDAEEQIAGEMEKYWP
AILYEMKFNGRKKNSRVGRCERAAAKGSVKGAASKRSQQFAAPASASAAG
PVSVSDDGGVDGSESDASMSNASAAGDGNESDASHASSAVSNAGGDGNEK
GASRASSATVSNAGNADGGPLAKLGRSKKVGCRFQINLSERKGKGARARP
FFLAQRFESEVPVSPLPR*
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mRNA from alignment at P-wetherbeei_contig797:2307..4341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig797.7.1 ID=mRNA_P-wetherbeei_contig797.7.1|Name=mRNA_P-wetherbeei_contig797.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2035bp|location=Sequence derived from alignment at P-wetherbeei_contig797:2307..4341- (Phaeothamnion wetherbeei SAG_119_79)
GCATACGGGCAGTACAGGTACATAAGAGAGTGAGGGCCCCCCGCTCGCGC
CATGCGAAGCCCCCCCGGGGCGCCAGTGGCTCTCCTTGCGGTCCCTCACG
GTCTCTTGCACCTTGGCATCCACCTTTGGGGCCATGGCTTCATCAACGCC
TGGCCCTCAAGGCCGTCCTTTGAGGGCGGCCGGACGGAGAGTTCATCATG
GCAGCCCTGATGTAAGGGTGTTCGAAGCTGGCTCGACCACAGGCCAATAC
CGACAGCTTTCCCCGGCGTCACGGCGAGAGCTTCGTTTCACGAATGCGCC
AGAAGGAACTTTGGAGAGACAGCAAGAAGCGTCAGAGGCACAACCGGTAG
CTTCGGAGGTGAGCAGGAGAGACACATTATTCCTCGCTCCGTATATTGCC
GGCTTGTGGCTGCTGGTTGTTGTCAATTCATGCTAGCTGATTTTTTTGCC
GAGTGGGTGGCTCCTTTACCCGAAAGCGGCATTCAATCGTATCAGCTCTC
TCGTCTACGGCCGCCACGTTCTTGATTCGAAAACCTCTCGACGCTGAAGA
ATGCCATTGGCCCTATTTCCTCTCTCGTCTTCTGTGCTGCGCCGTTTCAT
TTGTGCAGGTCATTGAGGGTCTTTCAGCGGAGGCGAACAAGTTCTTAGAC
TTTATGTTTCCTCCCGGCTCAAAGGGCGCTGTAGATTGCCACTTGCCGGA
GTACGCGTTTGCCGTTGGTAAAAAGGGCACCCCGAACCGGGAGGATGGTG
GCATTTTCATCGGCGGCCAAACGTTCAAGTCCATGGTGGACGCGGAAGAG
CAGATTGCGGGGGAGATGGAGAAATACTGGCCAGCCATTCTCTATGAGAT
GAAGTTTAATGGTCGGAAAAAAAACTCAAGAGTGGGGAGATGCGAACGCG
CTGCGGCGAAGGGTTCGGTGAAAGGCGCGGCTTCGAAGCGCTCCCAGCAA
TTCGCTGCGCCCGCGAGTGCGAGTGCAGCGGGGCCGGTTAGTGTGTCCGA
TGATGGGGGCGTTGACGGGAGCGAGTCGGACGCCTCCATGTCCAATGCTT
CGGCGGCTGGCGACGGCAACGAGTCGGACGCGTCGCACGCATCTTCCGCC
GTCAGCAACGCCGGCGGCGACGGCAACGAGAAGGGAGCGTCGCGAGCATC
CTCTGCCACCGTCAGCAACGCGGGCAACGCCGACGGCGGCCCCCTCGCCA
AGTTGGGGAGGAGCAAGAAGGTCGGGTGTAGATTCCAGATCAACCTCAGC
GAGCGGAAGGGAAAAGGTGCGCGCGCGCGTCCGTTTTTTTTGGCACAGCG
CTTCGAATCTGAGGTACCTGTTTCTCCACTCCCCCGTTGACAACTTTCAA
CCAACCTCGATATTTATGCTTTGCTCGCCCGGTTTGCATGGTATATGGTC
GCACGGAAAGTGCGTGGGTCTTTCTGACCGCTCGGCCTCGATTTTCGCTA
TGCAGGGGACGTGGTAGTAACTTTGGCGCAAGTGTACCACAGCACAGAGT
GCCGGCAATTGGCAGAGTTGCGGGCTACAGCGATGGGGATGAGGCAGGAC
GTCGTCGACGAAGCTCATGGGCCGCTGGACAAAGAGGGCACGAAGAAGCA
GTCTTTTGAGCCGCAGCACTTCACGCAGGAGCTCATCGAGAACATTGAAG
ACTGGGCCCTGCGGCACAAGACGTCCAAGATTGTGAGCCTCGTCCAAGAG
TGGCGCAAGGAGCCGGACATCATGCGCGTTCTGAGCACGGGCGCCCGTAA
AAAGGTGTGTTTTGAAGTTCCGGCGTGTTTGGCCGTCTGGCCGTCATCGG
CTGTCCTCGTTGATTGCTGTATGCTGAAGGACGGCGCGCGTATCGAGACA
ACAGGTGTTTGTTTCTCGTGTTCGTGAGCCGTGACTGGCTGGCTGGTTTG
CTGATCGTTGACTGCCTGGCCTTTCACCTGTTGTGATTTTGCTGGGGCAG
GTGGAGGGTATTGTAAGGCGGGTCATTGAAAAACGTAAGCAGCTGGTGGA
TGACGCCCAAACTGTGCTGCACTTCTTGCAAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig797:2307..4341-

>mRNA_P-wetherbeei_contig797.7.1 ID=mRNA_P-wetherbeei_contig797.7.1|Name=mRNA_P-wetherbeei_contig797.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig797:2307..4341- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCATCAACGCCTGGCCCTCAAGGCCGTCCTTTGAGGGCGGCCGG
ACGGAGAGTTCATCATGGCAGCCCTGATGTAAGGGTGTTCGAAGCTGGCT
CGACCACAGGCCAATACCGACAGCTTTCCCCGGCGTCACGGCGAGAGCTT
CGTTTCACGAATGCGCCAGAAGGAACTTTGGAGAGACAGCAAGAAGCGTC
AGAGGCACAACCGGTAGCTTCGGAGGTCATTGAGGGTCTTTCAGCGGAGG
CGAACAAGTTCTTAGACTTTATGTTTCCTCCCGGCTCAAAGGGCGCTGTA
GATTGCCACTTGCCGGAGTACGCGTTTGCCGTTGGTAAAAAGGGCACCCC
GAACCGGGAGGATGGTGGCATTTTCATCGGCGGCCAAACGTTCAAGTCCA
TGGTGGACGCGGAAGAGCAGATTGCGGGGGAGATGGAGAAATACTGGCCA
GCCATTCTCTATGAGATGAAGTTTAATGGTCGGAAAAAAAACTCAAGAGT
GGGGAGATGCGAACGCGCTGCGGCGAAGGGTTCGGTGAAAGGCGCGGCTT
CGAAGCGCTCCCAGCAATTCGCTGCGCCCGCGAGTGCGAGTGCAGCGGGG
CCGGTTAGTGTGTCCGATGATGGGGGCGTTGACGGGAGCGAGTCGGACGC
CTCCATGTCCAATGCTTCGGCGGCTGGCGACGGCAACGAGTCGGACGCGT
CGCACGCATCTTCCGCCGTCAGCAACGCCGGCGGCGACGGCAACGAGAAG
GGAGCGTCGCGAGCATCCTCTGCCACCGTCAGCAACGCGGGCAACGCCGA
CGGCGGCCCCCTCGCCAAGTTGGGGAGGAGCAAGAAGGTCGGGTGTAGAT
TCCAGATCAACCTCAGCGAGCGGAAGGGAAAAGGTGCGCGCGCGCGTCCG
TTTTTTTTGGCACAGCGCTTCGAATCTGAGGTACCTGTTTCTCCACTCCC
CCGTTGA
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