mRNA_P-wetherbeei_contig7965.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7965.1.1
Unique NamemRNA_P-wetherbeei_contig7965.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7965.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7965contigP-wetherbeei_contig7965:2238..2928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size607
Hectar predicted targeting categoryother localisation
Exons2
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.2779365-CDS-P-wetherbeei_contig7965:2237..23201683187012.2779365-CDS-P-wetherbeei_contig7965:2237..2320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7965 2238..2320 +
1683187012.2872317-CDS-P-wetherbeei_contig7965:2404..29271683187012.2872317-CDS-P-wetherbeei_contig7965:2404..2927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7965 2405..2927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7965.1.1prot_P-wetherbeei_contig7965.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7965 2238..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7965.1.1

>prot_P-wetherbeei_contig7965.1.1 ID=prot_P-wetherbeei_contig7965.1.1|Name=mRNA_P-wetherbeei_contig7965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
GAVESQSSSSLTHSEDFTSDEDGLLMDDVGCGDVGSGGEEGEAEGLSSAR
PPSAESEAEGSPMDVEANAGEDGFPAMAATAVEAEAPTAAAGQGRRWPVL
ASADGETVVAPLAEGAVGPLEWGQSGNIAAAAVAAAVGQAEGAGRGHQRL
TAVCSKPPSAADGASVGAATSTAAPDAAPPAARRSASVKRPAPPASEDDD
PE
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mRNA from alignment at P-wetherbeei_contig7965:2238..2928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7965.1.1 ID=mRNA_P-wetherbeei_contig7965.1.1|Name=mRNA_P-wetherbeei_contig7965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=691bp|location=Sequence derived from alignment at P-wetherbeei_contig7965:2238..2928+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGGTAGAGTCGCAGTCGTCGTCGTCGTTGACACACTCCGAGGACTT
TACCTCGGACGAGGACGGCCTGCTGATGGACGACGTCGACGTGGACGCCG
ACGGCGACGACGGCGACGACGACGACGACGGACTCGGCCATGGGGACAAT
AAAAACGATGGTGTCGCCGTCGGCTGTGGCGATGTCGGCAGCGGTGGCGA
GGAGGGCGAGGCCGAAGGGCTGAGCAGCGCCAGGCCGCCATCGGCGGAGT
CGGAGGCGGAGGGCTCCCCGATGGACGTGGAGGCCAACGCGGGAGAAGAC
GGCTTCCCAGCGATGGCGGCGACGGCGGTGGAGGCGGAGGCCCCTACGGC
CGCAGCGGGCCAGGGGCGGCGGTGGCCCGTCCTGGCATCGGCGGACGGGG
AGACGGTGGTCGCACCCCTGGCCGAGGGCGCGGTGGGACCGCTGGAATGG
GGCCAGAGCGGCAACATCGCTGCCGCCGCCGTCGCAGCAGCAGTGGGGCA
GGCCGAGGGGGCCGGAAGGGGCCACCAGAGGCTTACGGCGGTATGCAGCA
AGCCTCCGTCGGCTGCCGACGGCGCGAGCGTCGGCGCGGCCACCAGCACC
GCCGCGCCCGATGCCGCACCGCCCGCGGCGCGAAGGTCGGCCTCTGTCAA
GCGTCCCGCTCCGCCTGCCTCGGAGGACGACGACCCCGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7965:2238..2928+

>mRNA_P-wetherbeei_contig7965.1.1 ID=mRNA_P-wetherbeei_contig7965.1.1|Name=mRNA_P-wetherbeei_contig7965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig7965:2238..2928+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGCGGTAGAGTCGCAGTCGTCGTCGTCGTTGACACACTCCGAGGACTT
TACCTCGGACGAGGACGGCCTGCTGATGGACGACGTCGGCTGTGGCGATG
TCGGCAGCGGTGGCGAGGAGGGCGAGGCCGAAGGGCTGAGCAGCGCCAGG
CCGCCATCGGCGGAGTCGGAGGCGGAGGGCTCCCCGATGGACGTGGAGGC
CAACGCGGGAGAAGACGGCTTCCCAGCGATGGCGGCGACGGCGGTGGAGG
CGGAGGCCCCTACGGCCGCAGCGGGCCAGGGGCGGCGGTGGCCCGTCCTG
GCATCGGCGGACGGGGAGACGGTGGTCGCACCCCTGGCCGAGGGCGCGGT
GGGACCGCTGGAATGGGGCCAGAGCGGCAACATCGCTGCCGCCGCCGTCG
CAGCAGCAGTGGGGCAGGCCGAGGGGGCCGGAAGGGGCCACCAGAGGCTT
ACGGCGGTATGCAGCAAGCCTCCGTCGGCTGCCGACGGCGCGAGCGTCGG
CGCGGCCACCAGCACCGCCGCGCCCGATGCCGCACCGCCCGCGGCGCGAA
GGTCGGCCTCTGTCAAGCGTCCCGCTCCGCCTGCCTCGGAGGACGACGAC
CCCGAG
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