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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2386 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-24_004320.1 |
| Cds size | 1932 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187012.005266-UTR-P-wetherbeei_contig7961:16..234 | 1683187012.005266-UTR-P-wetherbeei_contig7961:16..234 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig7961 17..234 + |
| 1683187012.0564518-UTR-P-wetherbeei_contig7961:2558..2794 | 1683187012.0564518-UTR-P-wetherbeei_contig7961:2558..2794 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig7961 2559..2794 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187012.0204265-CDS-P-wetherbeei_contig7961:234..597 | 1683187012.0204265-CDS-P-wetherbeei_contig7961:234..597 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig7961 235..597 + |
| 1683187012.0310557-CDS-P-wetherbeei_contig7961:716..845 | 1683187012.0310557-CDS-P-wetherbeei_contig7961:716..845 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig7961 717..845 + |
| 1683187012.041219-CDS-P-wetherbeei_contig7961:1118..2558 | 1683187012.041219-CDS-P-wetherbeei_contig7961:1118..2558 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig7961 1119..2558 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7961.1.1 >prot_P-wetherbeei_contig7961.1.1 ID=prot_P-wetherbeei_contig7961.1.1|Name=mRNA_P-wetherbeei_contig7961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=644bp
MSKNPEQWQREASVLVLRELAVLRKLLHRNRNQHRHAKYFDSAGHAVKAF
DDLGPGRLPALIAAAEAAKAKLASTQSRNNRIQEACVNEAVILATQARDA
VTLCAQALSCTAKAAMHFAHQVSRSLFMAFAMVLMACQARLFTCGLHLAA
RLVDVHRRLLAALQIHPVATTYLPPGALRTCHIAPAARLAIDQLRTAALT
GEAGSTAPPALPVGSGVRNGGNGGGNGSNVARSNGGGSANNGASGSGGGG
DGNNGSGVANSVDGEDIGEHFEPCAVPLSEPVRGRGPAAASAMKASVAVP
AVSGGQQPLPPSSSRPLLAADYSDSSGDEGCSISLFEPLPQEDGPAAVAS
AAAVAAATAAAAVAATELLPLVRDTRGEQPLASSNLAAAVRRPSAAALTG
DGGAAPMPFGGVTSTPRREPAKTARVAERRLEPMEKSIKSVDHAKVAVAA
ADVAPGRLESEKRKENRKGRKARLGWSGDPPAIHAAPDKKVGAATAAATT
AAPPAEAAAVPAAAGVGKTAEAAVTPSAAMPPTAARPAPAARPVLAPAAA
AAVVLPARSLDVARHQLLPAVASWSPQQIAPSESAQAKTASRRPKRAKAV
ADDIDDIFGAVVVKKGKLKKRKRAEGDADGPSIKRSGAGGRDS* back to topmRNA from alignment at P-wetherbeei_contig7961:17..2794+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig7961.1.1 ID=mRNA_P-wetherbeei_contig7961.1.1|Name=mRNA_P-wetherbeei_contig7961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2778bp|location=Sequence derived from alignment at P-wetherbeei_contig7961:17..2794+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAATGTCCATCCTGATCGCGCGCGTGAGAGCCGATATGAGAGGAAGAA
AAAATCCTATTTAGGGAAGCGGCGCCGGTTGAGGTGGAGAGAGGAGGGGG
AGCGGAAGGGAGAGGGGGGATGAGAGAGAGACGGATAGAAAAGGAGAAGC
TCACGCTTTACCATCGAGGCGGCAAAGCGTCTTTTTAAAGCCCAGCCTTT
TCTACGCTTGCTGCATTGATGAGCAAGAACCCAGAGCAATGGCAGCGTGA
GGCGTCCGTACTCGTGCTCCGGGAGCTCGCGGTGCTGCGGAAGCTCTTAC
ATCGCAACCGGAACCAGCACAGGCACGCCAAGTACTTTGACTCTGCCGGC
CACGCCGTCAAGGCCTTCGACGACCTTGGTCCTGGGAGGCTTCCCGCCCT
GATTGCGGCTGCCGAGGCAGCGAAGGCCAAACTCGCCTCAACCCAGTCGC
GGAACAATCGCATTCAAGAGGCGTGCGTCAACGAGGCCGTGATTTTGGCG
ACACAAGCACGCGACGCCGTGACTCTGTGCGCGCAGGCACTGAGCTGCAC
AGCCAAGGCGGCCATGCACTTCGCGCACCAGGTAGGAAGGGGAAAACGTT
TTGCTCCATTGGGACCGCGCGATCTCGAGGTTGAGGTTTCGTCACTCAGA
TCTTTCATTATCGTCTCATTCCTCGCTGCATGGCCCTCTTATGTCGGCAG
GTCTCTAGGTCGCTGTTCATGGCCTTTGCCATGGTACTGATGGCGTGCCA
GGCGCGGCTTTTCACCTGCGGTCTGCACCTCGCTGCCAGACTTGTGGACG
TTCATCGCAGGCTCCTCGCAGCGTTGCAGGTGCGTTGGTCGGTATTCTTT
CCATGTCGTACGCCAGAAGAGAAATAAAACTTTTAGGATTCGATATTCCT
TTCATGAGCGTGTGAGATTGTGCGATGGCCAGAATGCCGTTTTTCCGAGT
ATCGCATTTTAGTAGTACGGATAGTCATTTTGGATCATTCCATTTGCCCA
ATTGTTTCTATAGGCGGGCTCTTTTAAGAACATCTCATGGCATCTTCACA
GGCAATCTTCCTTTCCCTGTCCGCCTTTCCTTCTCGCGCTGTCTTCAACC
AGATCCACCCTGTGGCGACAACATATCTGCCGCCGGGGGCGCTGCGCACT
TGCCACATTGCTCCGGCTGCCAGGCTGGCGATTGACCAGCTCCGCACGGC
TGCACTGACTGGCGAAGCAGGCAGCACGGCACCACCGGCACTGCCAGTTG
GCAGTGGCGTTCGCAACGGCGGCAACGGTGGTGGCAACGGCAGCAATGTG
GCAAGGAGCAACGGGGGTGGCAGTGCCAATAATGGTGCTAGCGGCAGCGG
CGGTGGGGGCGATGGCAACAATGGTAGCGGCGTCGCCAACAGCGTGGACG
GGGAAGACATCGGTGAGCACTTCGAACCTTGTGCCGTTCCGCTCTCAGAG
CCGGTGCGTGGCAGGGGCCCGGCAGCGGCATCGGCGATGAAGGCCTCTGT
CGCCGTGCCGGCTGTGTCCGGTGGACAGCAGCCGCTGCCGCCCTCGTCGT
CGCGGCCGCTCCTTGCGGCGGATTACAGCGACAGCTCGGGAGACGAAGGA
TGCAGCATCAGTTTGTTCGAACCACTTCCGCAAGAAGACGGTCCAGCAGC
TGTGGCGTCCGCTGCAGCGGTGGCGGCGGCAACGGCGGCGGCGGCGGTGG
CAGCGACGGAGCTGTTGCCTCTGGTACGTGATACCAGAGGAGAGCAGCCT
CTCGCATCATCGAATCTCGCTGCGGCAGTGCGTCGTCCCAGTGCAGCTGC
ACTGACGGGCGATGGCGGCGCGGCGCCGATGCCATTCGGCGGCGTAACGT
CGACGCCACGGCGTGAGCCTGCCAAAACGGCTCGCGTCGCGGAAAGACGT
TTGGAGCCGATGGAAAAGTCGATAAAGTCCGTCGACCACGCGAAAGTGGC
AGTCGCTGCGGCCGACGTGGCGCCCGGCAGGCTTGAGAGTGAAAAGCGGA
AGGAGAACCGGAAGGGCCGCAAAGCCCGACTGGGTTGGAGCGGTGATCCT
CCTGCGATCCATGCGGCGCCCGACAAGAAGGTGGGGGCAGCCACAGCAGC
GGCGACGACGGCGGCGCCGCCTGCAGAAGCGGCGGCGGTGCCAGCAGCGG
CTGGAGTAGGGAAAACGGCAGAGGCGGCAGTGACGCCGTCAGCTGCGATG
CCACCAACAGCGGCAAGGCCAGCGCCAGCGGCAAGGCCGGTGCTAGCGCC
GGCGGCAGCGGCAGCGGTAGTTCTTCCTGCCAGATCTCTGGACGTTGCGC
GCCACCAACTGCTGCCGGCTGTGGCTTCATGGTCGCCGCAACAAATTGCA
CCAAGCGAGAGTGCGCAGGCGAAGACTGCGTCCCGCCGACCGAAGAGGGC
AAAGGCCGTTGCGGATGATATAGACGACATCTTTGGCGCCGTCGTAGTCA
AGAAAGGGAAGTTGAAAAAGCGAAAGCGCGCCGAAGGCGATGCGGACGGT
CCTTCTATCAAGCGCAGCGGGGCCGGCGGCCGCGACAGCTAGAGTGCAGC
GCCCGCCGCTACCGCCGCTGGTTTCGCGCCTTTGGGCAGTGTGTCGCTTA
CAAAAGGGATGGTGTGCAATAGATGAATCTTTAGAGGTTTCCAGCCTTCT
GCATTTCGCTGGCAACAATATGTGCGGCTGCATTTCGCTGGCAACAATAT
GTGCGGCAGCATGCCTGAAGATGCGCACTTGGGAAAGAGCAGAGAAAACT
TGAGACGATGATTTACAAAGGATGACAA back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig7961:17..2794+ >mRNA_P-wetherbeei_contig7961.1.1 ID=mRNA_P-wetherbeei_contig7961.1.1|Name=mRNA_P-wetherbeei_contig7961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1932bp|location=Sequence derived from alignment at P-wetherbeei_contig7961:17..2794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAGAACCCAGAGCAATGGCAGCGTGAGGCGTCCGTACTCGTGCT
CCGGGAGCTCGCGGTGCTGCGGAAGCTCTTACATCGCAACCGGAACCAGC
ACAGGCACGCCAAGTACTTTGACTCTGCCGGCCACGCCGTCAAGGCCTTC
GACGACCTTGGTCCTGGGAGGCTTCCCGCCCTGATTGCGGCTGCCGAGGC
AGCGAAGGCCAAACTCGCCTCAACCCAGTCGCGGAACAATCGCATTCAAG
AGGCGTGCGTCAACGAGGCCGTGATTTTGGCGACACAAGCACGCGACGCC
GTGACTCTGTGCGCGCAGGCACTGAGCTGCACAGCCAAGGCGGCCATGCA
CTTCGCGCACCAGGTCTCTAGGTCGCTGTTCATGGCCTTTGCCATGGTAC
TGATGGCGTGCCAGGCGCGGCTTTTCACCTGCGGTCTGCACCTCGCTGCC
AGACTTGTGGACGTTCATCGCAGGCTCCTCGCAGCGTTGCAGATCCACCC
TGTGGCGACAACATATCTGCCGCCGGGGGCGCTGCGCACTTGCCACATTG
CTCCGGCTGCCAGGCTGGCGATTGACCAGCTCCGCACGGCTGCACTGACT
GGCGAAGCAGGCAGCACGGCACCACCGGCACTGCCAGTTGGCAGTGGCGT
TCGCAACGGCGGCAACGGTGGTGGCAACGGCAGCAATGTGGCAAGGAGCA
ACGGGGGTGGCAGTGCCAATAATGGTGCTAGCGGCAGCGGCGGTGGGGGC
GATGGCAACAATGGTAGCGGCGTCGCCAACAGCGTGGACGGGGAAGACAT
CGGTGAGCACTTCGAACCTTGTGCCGTTCCGCTCTCAGAGCCGGTGCGTG
GCAGGGGCCCGGCAGCGGCATCGGCGATGAAGGCCTCTGTCGCCGTGCCG
GCTGTGTCCGGTGGACAGCAGCCGCTGCCGCCCTCGTCGTCGCGGCCGCT
CCTTGCGGCGGATTACAGCGACAGCTCGGGAGACGAAGGATGCAGCATCA
GTTTGTTCGAACCACTTCCGCAAGAAGACGGTCCAGCAGCTGTGGCGTCC
GCTGCAGCGGTGGCGGCGGCAACGGCGGCGGCGGCGGTGGCAGCGACGGA
GCTGTTGCCTCTGGTACGTGATACCAGAGGAGAGCAGCCTCTCGCATCAT
CGAATCTCGCTGCGGCAGTGCGTCGTCCCAGTGCAGCTGCACTGACGGGC
GATGGCGGCGCGGCGCCGATGCCATTCGGCGGCGTAACGTCGACGCCACG
GCGTGAGCCTGCCAAAACGGCTCGCGTCGCGGAAAGACGTTTGGAGCCGA
TGGAAAAGTCGATAAAGTCCGTCGACCACGCGAAAGTGGCAGTCGCTGCG
GCCGACGTGGCGCCCGGCAGGCTTGAGAGTGAAAAGCGGAAGGAGAACCG
GAAGGGCCGCAAAGCCCGACTGGGTTGGAGCGGTGATCCTCCTGCGATCC
ATGCGGCGCCCGACAAGAAGGTGGGGGCAGCCACAGCAGCGGCGACGACG
GCGGCGCCGCCTGCAGAAGCGGCGGCGGTGCCAGCAGCGGCTGGAGTAGG
GAAAACGGCAGAGGCGGCAGTGACGCCGTCAGCTGCGATGCCACCAACAG
CGGCAAGGCCAGCGCCAGCGGCAAGGCCGGTGCTAGCGCCGGCGGCAGCG
GCAGCGGTAGTTCTTCCTGCCAGATCTCTGGACGTTGCGCGCCACCAACT
GCTGCCGGCTGTGGCTTCATGGTCGCCGCAACAAATTGCACCAAGCGAGA
GTGCGCAGGCGAAGACTGCGTCCCGCCGACCGAAGAGGGCAAAGGCCGTT
GCGGATGATATAGACGACATCTTTGGCGCCGTCGTAGTCAAGAAAGGGAA
GTTGAAAAAGCGAAAGCGCGCCGAAGGCGATGCGGACGGTCCTTCTATCA
AGCGCAGCGGGGCCGGCGGCCGCGACAGCTAG back to top
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