mRNA_P-wetherbeei_contig795.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig795.1.1
Unique NamemRNA_P-wetherbeei_contig795.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig795.1.1 vs. uniprot
Match: A0A846FS94_9CYAN (Uncharacterized protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FS94_9CYAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.340e-8
Identity = 58/238 (24.37%), Postives = 108/238 (45.38%), Query Frame = 2 
Query:  413 YKHQSINPADYERWCFQRWFVILEYFEQLDNVPPVHCIVALDADILLLKSPAGLLRANIPVGVMEDFSASYDLVVRTLGSFMYWSLL-GLKSFTNFLTDIYQAPNASFIKAGAIRMPGRLPDEFNSQLIPLKDAEGVMWHWSDMFAVFEFMK--EDAKRRFCIAETDK-ENVIVNVSFPSPGNSI--FTVLNGNVHIWRPFNTTVGA-RENLMPSVASMHFKGDSKIFVDDIVLALLR 1105
            YKH SIN   +ER+CF+RWF++L     L     +H  V +D+D  LL  P  LL          D+  ++D        F+++  L  L+ F N++ ++Y   + + +K            +  +++       G  +H+SDM+A+ +F +  +  + +    +T K ++V +    P    +I  F     N++ +    + V    +     V  +HF+G+SK ++ D  L  LR
Sbjct:   72 YKHFSINKFSHERFCFERWFILLN----LAKTTQLHKFVYIDSDNFLLVPPNRLLETYTDY----DYGQTFDPFAP---EFIFFERLDALREFCNYIDNLYANDHETVLKVVL---------KNTAKIWGGTHPSGSSFHFSDMWAMLDFWENTQGNENQIYQFQTQKFKHVCLQECMPDASINIHSFNEYKSNIYRFDGKGSEVSVLHKGKWKRVNMIHFQGNSKRYIGDFYLQFLR 289
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BLAST of mRNA_P-wetherbeei_contig795.1.1 vs. uniprot
Match: A0A3R6TG92_9BACT (Uncharacterized protein n=1 Tax=Parabacteroides sp. AF14-59 TaxID=2292240 RepID=A0A3R6TG92_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.460e-5
Identity = 49/219 (22.37%), Postives = 94/219 (42.92%), Query Frame = 2 
Query:  236 RSLNSYVPEIEQAVRICGSDCRVHMLSNDPT----VLNHSAALGLLIGEVKDFSKIGDRFARIYKHQSINPADYERWCFQRWFVILEYF--EQLDNVPPVHCIVALDADILLLKSPAGLLRANIPVGVMEDFSASYDLVVRT--LGSFMYWSLLGLKSFTNFLTDIYQAPNASFIKAGAIRMPGRLPDEFNSQLIPLKDAEGVMWHWSDMFAVFEFMKE 868
            R  + Y+  + +  R    D  +++L ++       +NH          + D+    + F ++Y+H S N  +YE +CFQRWF+IL++   ++++N       V LD+D+LL               V+  +   YD  +       F  +++  L  F +++  +Y  P+ SF K         L + + S ++  K          DM A+  ++KE
Sbjct:   12 RGNDFYLNYVLRQARYFNGDADIYLLGDETNHRYNFVNHVM--------ISDYMSSANEFKKVYEHMSSNLYEYELFCFQRWFIILDFVRNKKIEN------FVCLDSDVLLYCDMTS---------VLSSYIGKYDFTICNGYHPGFNLFNIESLDKFCHYMKMLYIEPS-SFCK---------LKERYQSFILEKKPGGNC-----DMTAIEYYVKE 192
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BLAST of mRNA_P-wetherbeei_contig795.1.1 vs. uniprot
Match: A0A5C6CUU9_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CUU9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 8.650e-5
Identity = 53/237 (22.36%), Postives = 101/237 (42.62%), Query Frame = 2 
Query:  368 EVKDFSKIGDRFARIYKHQSINPADYERWCFQRWFVILEYFEQLDNVPPVHCIVALDADILLLKSPAGLLRANIPVGVMEDFSASYDLVVRTLGSFMYWSLLGLKSFTNFLTDIYQAPNASFIKAGAIRMPGRLPDEFNSQLIPLKDAEGVMWHWSDMFAVFEFMKEDAKRRFCIAETDKENVIVNVSFPSPGNSIFTVLNGNVHIWR---PFNTTVGARENLMPSVASMHFKGDSK 1069
            +V D       F ++YKH+S N   +E +CFQRWFV+L++ ++   +    C    D+D+++    + L      V ++    + + L+V+        +  GL+ F N++  +Y              +  +L   F       + +EG +   SDM A FE+   +   R   +    E  I++      G+ +  V   ++H W+   P+       E +     S+HF+G +K
Sbjct:   51 DVADHFDSAKEFEKVYKHRSTNGIKFELFCFQRWFVLLQWMKE-QGIERCWCH---DSDVMIYSDMSELAEQYSDVDLVICAKSGHSLLVQ--------NRQGLEDFCNYVLRMYTDET----------LDAKLNAFFEQ-----RQSEGGLGGISDMLA-FEYFAHEFPERVASSHQSYERGIIDPGMHVTGDFVGDVRK-SIH-WKNALPYGRLKDGNEAVR--FHSLHFQGGNK 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig795.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A846FS94_9CYAN2.340e-824.37Uncharacterized protein n=1 Tax=Cyanothece sp. SIO... [more]
A0A3R6TG92_9BACT5.460e-522.37Uncharacterized protein n=1 Tax=Parabacteroides sp... [more]
A0A5C6CUU9_9BACT8.650e-522.36Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig795contigP-wetherbeei_contig795:163..2544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1150600.ADIARSV_2807
Model size2223
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.42e-07
EggNOG OGs2C7E6@1|root,32JF5@2|Bacteria,4NSF7@976|Bacteroidetes
Cds size2013
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.08852-UTR-P-wetherbeei_contig795:162..2711683187011.08852-UTR-P-wetherbeei_contig795:162..271Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig795 163..271 +
1683187011.1286666-UTR-P-wetherbeei_contig795:2443..25441683187011.1286666-UTR-P-wetherbeei_contig795:2443..2544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig795 2444..2544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.1022816-CDS-P-wetherbeei_contig795:271..5711683187011.1022816-CDS-P-wetherbeei_contig795:271..571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig795 272..571 +
1683187011.1134439-CDS-P-wetherbeei_contig795:730..24431683187011.1134439-CDS-P-wetherbeei_contig795:730..2443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig795 731..2443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig795.1.1prot_P-wetherbeei_contig795.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig795 272..2443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig795.1.1

>prot_P-wetherbeei_contig795.1.1 ID=prot_P-wetherbeei_contig795.1.1|Name=mRNA_P-wetherbeei_contig795.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=671bp
MRRSFFALWKCIFWLHPIVLATIAAAPLDIVFTMVGGLSTSARSLNSYVP
EIEQAVRICGSDCRVHMLSNDPTVLNHSAALGLLIGEVKDFSKIGDRFAR
IYKHQSINPADYERWCFQRWFVILEYFEQLDNVPPVHCIVALDADILLLK
SPAGLLRANIPVGVMEDFSASYDLVVRTLGSFMYWSLLGLKSFTNFLTDI
YQAPNASFIKAGAIRMPGRLPDEFNSQLIPLKDAEGVMWHWSDMFAVFEF
MKEDAKRRFCIAETDKENVIVNVSFPSPGNSIFTVLNGNVHIWRPFNTTV
GARENLMPSVASMHFKGDSKIFVDDIVLALLRHGWDPTEHGGRAGIDASI
PSLSGGTAVCLSSLGEVAAEEQRALGLCYSLFFFVCGFQGLDAKFVGDFI
ADHPLMLHVRSDDSGVYGDHEGGQHLQSVYPTDSLRETSSEATCGCNWDG
CWYTCPALAETVPATPSNRQRLYESWTQHSSMGNQGSSMFVETDPDLLLQ
FKNDMFPGVSTGVLVIRHPLCNGDRGSPERWANVWIDFLTRQLPEIAGSV
WLVRVEDALREPARIREELHAMLRLPVLLSTFADSTRPLAEETLVTMYKD
ARANDDCVALREQEQLSVRGNPAPWDGILVARLASAFGYSLDSEEPSGRH
SILVFSKTELLAISQGFFAP*
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mRNA from alignment at P-wetherbeei_contig795:163..2544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig795.1.1 ID=mRNA_P-wetherbeei_contig795.1.1|Name=mRNA_P-wetherbeei_contig795.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2382bp|location=Sequence derived from alignment at P-wetherbeei_contig795:163..2544+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTGAACCCGTCCTCCGCAGGGCTATATTTGAGCTGCCACACGTTTTTG
ATCAGCACCGATTTTTGTCCTGTCCGGATTGGTGTCTAGCGTACCTTGTC
TCTCTCGGAATGAGGCGCTCATTTTTCGCTTTGTGGAAATGCATCTTCTG
GCTCCATCCCATAGTGTTGGCGACCATTGCTGCGGCGCCTCTAGATATTG
TTTTCACCATGGTGGGCGGCCTCAGCACGTCGGCGCGCTCGCTCAATAGC
TATGTTCCTGAAATCGAGCAGGCCGTGCGTATCTGCGGGAGTGACTGCAG
GGTTCACATGCTCAGCAACGATCCTACAGTGTTAAACCACTCGGCGGCAC
TGGGTCTCCTTATTGGCGAAGTCAAAGACTTCTCGAAAATAGGCGATCGC
TTCGCCAGGGCAAGTTTTGGTGTGCAGCGCACGTGCATTATGTTTCCTTT
CGTCCTGTCTCTTATGTTTATTTAAGCTCTTCCTATAACATATTTTTGCA
CATAACATTTTGTGATGGTTCTAAAGTCTCTCTTCCGTTCCACTGTCGCA
TCCGGAACCCCCAATCAGATTTACAAGCACCAATCCATCAATCCTGCTGA
TTACGAGCGCTGGTGCTTTCAGCGCTGGTTCGTCATTCTCGAGTACTTCG
AACAACTCGATAACGTTCCGCCTGTGCACTGCATTGTCGCCCTCGACGCA
GATATTCTCTTGCTTAAAAGTCCGGCCGGACTGCTACGCGCCAACATCCC
AGTTGGTGTGATGGAGGACTTCAGTGCTTCCTATGATTTGGTGGTGCGCA
CCCTGGGTTCATTCATGTACTGGTCGTTGCTTGGCTTAAAAAGCTTCACC
AACTTCCTGACAGATATCTACCAGGCGCCGAATGCATCTTTCATCAAAGC
TGGCGCGATTCGGATGCCTGGAAGGCTTCCAGACGAATTCAACAGCCAGC
TCATCCCTCTAAAGGACGCAGAAGGGGTAATGTGGCACTGGTCAGATATG
TTTGCTGTTTTTGAATTTATGAAAGAGGACGCTAAGCGAAGATTTTGCAT
TGCGGAGACCGACAAGGAAAATGTCATCGTCAACGTCAGCTTTCCCTCCC
CAGGGAACTCAATTTTCACAGTTCTCAACGGCAACGTGCACATTTGGCGC
CCATTCAATACCACTGTCGGAGCTAGAGAGAATCTGATGCCAAGCGTGGC
ATCGATGCATTTTAAAGGCGACAGCAAAATTTTTGTTGACGACATTGTGC
TTGCGCTTCTTCGGCATGGTTGGGACCCGACTGAGCATGGCGGCCGGGCT
GGAATAGACGCTTCGATACCGTCCTTGAGCGGGGGCACAGCGGTATGCCT
AAGCAGCCTGGGTGAGGTGGCCGCCGAAGAGCAGCGGGCCTTGGGCCTGT
GCTATTCCCTCTTCTTCTTCGTCTGCGGCTTTCAGGGGTTGGACGCCAAG
TTTGTTGGAGACTTCATCGCCGATCATCCATTAATGCTCCATGTTCGATC
TGACGACAGCGGAGTTTACGGTGACCACGAAGGAGGGCAGCACCTGCAGT
CGGTTTATCCCACCGACTCGCTACGGGAGACGAGCAGCGAGGCCACCTGC
GGTTGCAACTGGGACGGCTGCTGGTACACGTGCCCGGCGCTAGCCGAGAC
CGTCCCTGCGACACCGTCCAACAGGCAGCGGCTGTACGAGAGCTGGACAC
AGCATTCTTCCATGGGCAACCAAGGCTCCTCCATGTTTGTGGAGACCGAC
CCCGACTTACTCTTGCAGTTCAAGAATGACATGTTCCCCGGCGTCTCGAC
AGGGGTTTTAGTGATCCGGCATCCGCTTTGCAATGGTGACAGAGGTTCCC
CGGAGCGATGGGCCAATGTCTGGATCGACTTCTTGACCAGGCAGCTGCCA
GAAATCGCCGGTTCCGTCTGGCTGGTGCGGGTGGAAGACGCCTTGCGCGA
GCCCGCCAGAATACGGGAGGAGCTGCATGCTATGCTCCGCCTTCCGGTGC
TTCTCTCCACCTTTGCGGACAGCACTCGTCCTCTGGCGGAGGAGACACTG
GTGACGATGTACAAGGACGCCAGAGCAAACGACGATTGCGTCGCTTTGCG
GGAACAAGAGCAGCTATCTGTCCGTGGAAACCCGGCCCCCTGGGACGGCA
TCCTGGTTGCGCGACTTGCCTCTGCCTTCGGCTACTCTTTGGACTCCGAA
GAGCCATCAGGGCGTCATTCCATCCTCGTCTTCAGTAAGACGGAGTTACT
AGCAATATCTCAAGGCTTCTTTGCTCCCTGAAATGTAACCTACCGGTGCG
TGACCGATCTCGACGCGCGCAATGCCGGTCCTTTCTCATCTTTGCAATAA
GTGCGTGCCTTGGCGATGTCGCTAGTACCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig795:163..2544+

>mRNA_P-wetherbeei_contig795.1.1 ID=mRNA_P-wetherbeei_contig795.1.1|Name=mRNA_P-wetherbeei_contig795.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2013bp|location=Sequence derived from alignment at P-wetherbeei_contig795:163..2544+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCGCTCATTTTTCGCTTTGTGGAAATGCATCTTCTGGCTCCATCC
CATAGTGTTGGCGACCATTGCTGCGGCGCCTCTAGATATTGTTTTCACCA
TGGTGGGCGGCCTCAGCACGTCGGCGCGCTCGCTCAATAGCTATGTTCCT
GAAATCGAGCAGGCCGTGCGTATCTGCGGGAGTGACTGCAGGGTTCACAT
GCTCAGCAACGATCCTACAGTGTTAAACCACTCGGCGGCACTGGGTCTCC
TTATTGGCGAAGTCAAAGACTTCTCGAAAATAGGCGATCGCTTCGCCAGG
ATTTACAAGCACCAATCCATCAATCCTGCTGATTACGAGCGCTGGTGCTT
TCAGCGCTGGTTCGTCATTCTCGAGTACTTCGAACAACTCGATAACGTTC
CGCCTGTGCACTGCATTGTCGCCCTCGACGCAGATATTCTCTTGCTTAAA
AGTCCGGCCGGACTGCTACGCGCCAACATCCCAGTTGGTGTGATGGAGGA
CTTCAGTGCTTCCTATGATTTGGTGGTGCGCACCCTGGGTTCATTCATGT
ACTGGTCGTTGCTTGGCTTAAAAAGCTTCACCAACTTCCTGACAGATATC
TACCAGGCGCCGAATGCATCTTTCATCAAAGCTGGCGCGATTCGGATGCC
TGGAAGGCTTCCAGACGAATTCAACAGCCAGCTCATCCCTCTAAAGGACG
CAGAAGGGGTAATGTGGCACTGGTCAGATATGTTTGCTGTTTTTGAATTT
ATGAAAGAGGACGCTAAGCGAAGATTTTGCATTGCGGAGACCGACAAGGA
AAATGTCATCGTCAACGTCAGCTTTCCCTCCCCAGGGAACTCAATTTTCA
CAGTTCTCAACGGCAACGTGCACATTTGGCGCCCATTCAATACCACTGTC
GGAGCTAGAGAGAATCTGATGCCAAGCGTGGCATCGATGCATTTTAAAGG
CGACAGCAAAATTTTTGTTGACGACATTGTGCTTGCGCTTCTTCGGCATG
GTTGGGACCCGACTGAGCATGGCGGCCGGGCTGGAATAGACGCTTCGATA
CCGTCCTTGAGCGGGGGCACAGCGGTATGCCTAAGCAGCCTGGGTGAGGT
GGCCGCCGAAGAGCAGCGGGCCTTGGGCCTGTGCTATTCCCTCTTCTTCT
TCGTCTGCGGCTTTCAGGGGTTGGACGCCAAGTTTGTTGGAGACTTCATC
GCCGATCATCCATTAATGCTCCATGTTCGATCTGACGACAGCGGAGTTTA
CGGTGACCACGAAGGAGGGCAGCACCTGCAGTCGGTTTATCCCACCGACT
CGCTACGGGAGACGAGCAGCGAGGCCACCTGCGGTTGCAACTGGGACGGC
TGCTGGTACACGTGCCCGGCGCTAGCCGAGACCGTCCCTGCGACACCGTC
CAACAGGCAGCGGCTGTACGAGAGCTGGACACAGCATTCTTCCATGGGCA
ACCAAGGCTCCTCCATGTTTGTGGAGACCGACCCCGACTTACTCTTGCAG
TTCAAGAATGACATGTTCCCCGGCGTCTCGACAGGGGTTTTAGTGATCCG
GCATCCGCTTTGCAATGGTGACAGAGGTTCCCCGGAGCGATGGGCCAATG
TCTGGATCGACTTCTTGACCAGGCAGCTGCCAGAAATCGCCGGTTCCGTC
TGGCTGGTGCGGGTGGAAGACGCCTTGCGCGAGCCCGCCAGAATACGGGA
GGAGCTGCATGCTATGCTCCGCCTTCCGGTGCTTCTCTCCACCTTTGCGG
ACAGCACTCGTCCTCTGGCGGAGGAGACACTGGTGACGATGTACAAGGAC
GCCAGAGCAAACGACGATTGCGTCGCTTTGCGGGAACAAGAGCAGCTATC
TGTCCGTGGAAACCCGGCCCCCTGGGACGGCATCCTGGTTGCGCGACTTG
CCTCTGCCTTCGGCTACTCTTTGGACTCCGAAGAGCCATCAGGGCGTCAT
TCCATCCTCGTCTTCAGTAAGACGGAGTTACTAGCAATATCTCAAGGCTT
CTTTGCTCCCTGA
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