mRNA_P-wetherbeei_contig7948.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7948.1.1
Unique NamemRNA_P-wetherbeei_contig7948.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7948.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7948contigP-wetherbeei_contig7948:301..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2140
Hectar predicted targeting categoryother localisation
Exons2
Cds size1683
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.0058558-UTR-P-wetherbeei_contig7948:300..4731683187011.0058558-UTR-P-wetherbeei_contig7948:300..473Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7948 301..473 -
1683187011.0389209-UTR-P-wetherbeei_contig7948:2567..28511683187011.0389209-UTR-P-wetherbeei_contig7948:2567..2851Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7948 2568..2851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.0178494-CDS-P-wetherbeei_contig7948:473..19471683187011.0178494-CDS-P-wetherbeei_contig7948:473..1947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7948 474..1947 -
1683187011.028136-CDS-P-wetherbeei_contig7948:2358..25671683187011.028136-CDS-P-wetherbeei_contig7948:2358..2567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7948 2359..2567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7948.1.1prot_P-wetherbeei_contig7948.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7948 474..2567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7948.1.1

>prot_P-wetherbeei_contig7948.1.1 ID=prot_P-wetherbeei_contig7948.1.1|Name=mRNA_P-wetherbeei_contig7948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=561bp
MECGVWGMEEYETSVAGEASFSGGESVMGASWRPPRMPGLQNSPPIAMFR
RDAESGQLQVLVTREQSYYRKWQNKPGANAPGASYGRKRAATSFGVTFRE
PTPPESAPSSSLGIHSPRMTSIMKPSLSASDTAAFSCAQRLASPPRWDAS
FCQRDSCGSATEEGRQPQLSLDIEKTSSENDYYGDGGGEKAGAKDDLDVH
NAGKEEEPEASAEELSHSGEGVLWAEHGGGGGGGGGGGGDERGCEENCIR
LQDAVRIAAVLVPSPAGSISAARQQRPPESCEGPAAATSAATVAPAADAA
PPMNASIPPLAADSSLDCRRSSAAASAAAAKGNPAAGPKVDEVASTAAVA
RMMPHRPVAARFDAGHRQLPRAGCRGSINSSGDGADASGQNNAGNANSSG
SGADDISGGADNGATVDCGSAGCESNGTSGTSGTSGTSGTSDTSDTSDIF
CGGGTSGGGSGGESSGSGGESGGSGGESSGSSSAGGGLGSHAAASSRNPR
RSPARPALAPLKRHASAAAGAALKQLTRLLRLRPCHVSQHLAAAGGGRGE
GIATLTEGKK*
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mRNA from alignment at P-wetherbeei_contig7948:301..2851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7948.1.1 ID=mRNA_P-wetherbeei_contig7948.1.1|Name=mRNA_P-wetherbeei_contig7948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2551bp|location=Sequence derived from alignment at P-wetherbeei_contig7948:301..2851- (Phaeothamnion wetherbeei SAG_119_79)
CACGACTCCGGTGCAACACGCGAGAATTTCTGTTTCGTTGCGCAACAGTG
TAAAAGAAGAAGGGAAAGGAGAGGAATTACCCGCTCATAACAGGAGGGCA
AATACGCAGGAGGAAGTAAAGGTGACAGGTGCCTCTTTACTCCAAATCAA
CTCAACGATTGGTTGCCACGTCGACTTAGGCCCTTCCCTCGTTAAATTAA
AAGCGCGCCAGACAGGCTCCCTCCACACCACACGGCGCGCCACACGGTGC
TCCTCACGGTGCTGCATCAGCCGACGGAATCAGGATGGAATGTGGGGTTT
GGGGAATGGAGGAATACGAGACGTCGGTGGCGGGAGAAGCCAGCTTTTCA
GGCGGAGAATCGGTGATGGGTGCGAGCTGGCGCCCTCCAAGGATGCCTGG
CCTCCAAAACTCGCCACCGATTGCAATGTTCCGGAGAGACGCTGAGAGCG
GACAACTTCAAGTTCTCGTCACACGAGAACAGTCCTACTACAGGTTAATG
CGCTCTCCACGTTCCGATGTTGTTCCTTTTTCCTTTCATTGCCATTTAGC
TTCTTTGCCCCATCCTTTCCTACTCGGAGCTTTTCCCGCAAGCGGTAAAT
TCTCACAGGCGAAATGCGACGCAGAATGCTGTATTTCATCCTCCTTAGGT
TGTCATTGAAATGTCTGCTTTATGCTTGCATTGTCTTTATCCAAGCTCGG
AAGCAACCATGAAAGAGGGTTCAAGTTTGTCCGTGGTGCCGCTTCTTGGT
GGCAAATAACCTCTTTACTCCTCTTAGAGGGCTGCCAAGGAGTCCTTCTT
TGTCCACGCACCGCTCAGCGCCGCGTCGGTCCGCCCCTCACATCCTTGCT
CCACCATTCTGTCGATTTTGCACCCGCCACTCTCGCTTCTTTCAAATCAA
ACAGGAAGTGGCAGAACAAACCGGGGGCTAACGCGCCCGGCGCCTCATAC
GGTCGAAAGCGGGCGGCGACTTCCTTCGGCGTCACTTTTCGGGAGCCGAC
ACCGCCGGAATCGGCGCCATCGTCGTCCCTCGGAATCCACTCCCCCCGGA
TGACTTCTATTATGAAGCCGTCTTTGAGCGCTTCTGACACCGCGGCGTTC
AGCTGCGCGCAAAGGCTGGCGTCGCCGCCGCGATGGGACGCCTCCTTCTG
CCAGCGAGACAGTTGCGGGAGCGCCACTGAAGAGGGGAGGCAGCCGCAGC
TGTCTCTCGACATAGAAAAGACGTCGAGCGAAAACGACTACTACGGGGAC
GGTGGCGGGGAGAAAGCGGGAGCTAAAGATGATCTTGATGTACACAATGC
AGGAAAAGAAGAGGAGCCGGAGGCGTCGGCGGAAGAACTGTCTCATTCCG
GCGAAGGTGTGCTGTGGGCAGAGCATGGCGGGGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGACGAGAGAGGGTGTGAAGAGAACTGTATCAGGTTGCA
GGATGCTGTCCGGATCGCAGCTGTCCTGGTGCCGTCGCCGGCCGGGAGCA
TAAGCGCTGCGCGCCAGCAGAGGCCACCGGAGTCCTGCGAGGGACCCGCT
GCCGCGACGTCGGCAGCAACTGTGGCGCCTGCGGCGGACGCCGCTCCGCC
GATGAACGCTTCCATCCCCCCACTCGCCGCCGATTCCTCTCTGGATTGTC
GTCGGTCATCAGCGGCTGCTTCGGCTGCAGCTGCAAAGGGAAACCCCGCC
GCCGGTCCCAAGGTGGACGAAGTTGCGAGCACTGCCGCCGTCGCTAGAAT
GATGCCTCATCGGCCAGTGGCGGCACGCTTTGACGCCGGCCACCGACAAC
TGCCCCGGGCGGGTTGTCGTGGCAGCATCAACAGCAGCGGCGACGGCGCC
GACGCCAGCGGCCAAAATAACGCCGGCAATGCCAACAGCAGCGGCAGCGG
TGCGGACGACATTTCAGGCGGGGCCGACAATGGAGCCACGGTAGACTGCG
GGAGTGCTGGATGCGAAAGCAACGGCACTAGCGGTACCAGCGGCACGAGC
GGCACCAGCGGCACCAGCGACACCAGCGACACCAGCGACATCTTCTGTGG
TGGCGGCACAAGCGGCGGAGGCAGCGGGGGCGAAAGCAGCGGCAGCGGGG
GCGAAAGCGGCGGCAGCGGGGGCGAAAGCAGCGGCAGCAGCAGCGCCGGT
GGTGGGTTGGGGTCGCACGCGGCTGCCAGTTCCCGGAATCCCCGGCGCTC
TCCGGCCCGGCCGGCCTTGGCTCCGCTGAAGCGGCATGCCTCGGCCGCTG
CCGGGGCGGCGCTGAAGCAACTGACGCGCCTGCTCCGCCTCAGGCCGTGC
CACGTCTCGCAGCACCTGGCGGCGGCCGGCGGCGGCCGCGGGGAAGGTAT
CGCTACGCTCACGGAGGGGAAGAAATAGATTTAACTCATTACTTGAGTAT
TTTAGAGGCACGGGGATGGGGACGAGGCGCACCAAACCTCCTGTGTGCAA
TTTTGTTGCACACACGCATTATTTGGATCCTAGGCAGTCACCACTCCCAT
TTACTCTGTTCGGCTTTTACAATATAAAGAACTTCGGGAATTGTTCAAAG
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7948:301..2851-

>mRNA_P-wetherbeei_contig7948.1.1 ID=mRNA_P-wetherbeei_contig7948.1.1|Name=mRNA_P-wetherbeei_contig7948.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1683bp|location=Sequence derived from alignment at P-wetherbeei_contig7948:301..2851- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAATGTGGGGTTTGGGGAATGGAGGAATACGAGACGTCGGTGGCGGG
AGAAGCCAGCTTTTCAGGCGGAGAATCGGTGATGGGTGCGAGCTGGCGCC
CTCCAAGGATGCCTGGCCTCCAAAACTCGCCACCGATTGCAATGTTCCGG
AGAGACGCTGAGAGCGGACAACTTCAAGTTCTCGTCACACGAGAACAGTC
CTACTACAGGAAGTGGCAGAACAAACCGGGGGCTAACGCGCCCGGCGCCT
CATACGGTCGAAAGCGGGCGGCGACTTCCTTCGGCGTCACTTTTCGGGAG
CCGACACCGCCGGAATCGGCGCCATCGTCGTCCCTCGGAATCCACTCCCC
CCGGATGACTTCTATTATGAAGCCGTCTTTGAGCGCTTCTGACACCGCGG
CGTTCAGCTGCGCGCAAAGGCTGGCGTCGCCGCCGCGATGGGACGCCTCC
TTCTGCCAGCGAGACAGTTGCGGGAGCGCCACTGAAGAGGGGAGGCAGCC
GCAGCTGTCTCTCGACATAGAAAAGACGTCGAGCGAAAACGACTACTACG
GGGACGGTGGCGGGGAGAAAGCGGGAGCTAAAGATGATCTTGATGTACAC
AATGCAGGAAAAGAAGAGGAGCCGGAGGCGTCGGCGGAAGAACTGTCTCA
TTCCGGCGAAGGTGTGCTGTGGGCAGAGCATGGCGGGGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGACGAGAGAGGGTGTGAAGAGAACTGTATCAGG
TTGCAGGATGCTGTCCGGATCGCAGCTGTCCTGGTGCCGTCGCCGGCCGG
GAGCATAAGCGCTGCGCGCCAGCAGAGGCCACCGGAGTCCTGCGAGGGAC
CCGCTGCCGCGACGTCGGCAGCAACTGTGGCGCCTGCGGCGGACGCCGCT
CCGCCGATGAACGCTTCCATCCCCCCACTCGCCGCCGATTCCTCTCTGGA
TTGTCGTCGGTCATCAGCGGCTGCTTCGGCTGCAGCTGCAAAGGGAAACC
CCGCCGCCGGTCCCAAGGTGGACGAAGTTGCGAGCACTGCCGCCGTCGCT
AGAATGATGCCTCATCGGCCAGTGGCGGCACGCTTTGACGCCGGCCACCG
ACAACTGCCCCGGGCGGGTTGTCGTGGCAGCATCAACAGCAGCGGCGACG
GCGCCGACGCCAGCGGCCAAAATAACGCCGGCAATGCCAACAGCAGCGGC
AGCGGTGCGGACGACATTTCAGGCGGGGCCGACAATGGAGCCACGGTAGA
CTGCGGGAGTGCTGGATGCGAAAGCAACGGCACTAGCGGTACCAGCGGCA
CGAGCGGCACCAGCGGCACCAGCGACACCAGCGACACCAGCGACATCTTC
TGTGGTGGCGGCACAAGCGGCGGAGGCAGCGGGGGCGAAAGCAGCGGCAG
CGGGGGCGAAAGCGGCGGCAGCGGGGGCGAAAGCAGCGGCAGCAGCAGCG
CCGGTGGTGGGTTGGGGTCGCACGCGGCTGCCAGTTCCCGGAATCCCCGG
CGCTCTCCGGCCCGGCCGGCCTTGGCTCCGCTGAAGCGGCATGCCTCGGC
CGCTGCCGGGGCGGCGCTGAAGCAACTGACGCGCCTGCTCCGCCTCAGGC
CGTGCCACGTCTCGCAGCACCTGGCGGCGGCCGGCGGCGGCCGCGGGGAA
GGTATCGCTACGCTCACGGAGGGGAAGAAATAG
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