mRNA_P-wetherbeei_contig7947.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7947.1.4
Unique NamemRNA_P-wetherbeei_contig7947.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A6H5J8N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N0_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.410e-72
Identity = 159/337 (47.18%), Postives = 194/337 (57.57%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVG---AAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHMRG GG+VIRADV+ + GGRS+GCGIVE+A  +QA +AIE L N+ELK R IFVRED  S    S  XXXXXXXXXXXXXXXX                                        +               A G R+YV NLAW   WQELKDHM+ VG V+HADV+ D  G+S+GCGIVEY+    A RAIRELNNT LGGR + VREDR++ +                              AG  RQL+VGNL ++ TW  LKD F+T G+V+RAD+M+D S+RSKGWG VRF +  EA +A+  L+G  +G R IEVRED+K
Sbjct:   31 DHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRMIFVREDRESGTPGSGHXXXXXXXXXXXXXXXXMVGQMQMGPMGAFGGQPFAAGPGALMGQSMGGHMQQMQMHQXXXXXXXXXXXAMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVLHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXXENLAG--RQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQIEVREDSK 365          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: D8LGN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN3_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.150e-70
Identity = 162/339 (47.79%), Postives = 195/339 (57.52%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGR----GAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSH-RCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHMRG GG+VIRADV+ + GGRS+GCGIVE+A  +QA +AIE L N+ELK R IFVRED  S     XXXXXXXXXXXXXXXX                                        Q             GA   A G R+YV NLAW   WQELKDHM+ VG VVHADV+ D  G+S+GCGIVEY+    A RAIRELNNT LGGR + VREDR++ + R                            G    RQL+VGNL ++ TW  LKD F+T G+V+RAD+M+D S+RSKGWG VRF +  EA +A+  L+G  +G R IEVRED+K
Sbjct:  169 DHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRMIFVREDRESGTPGXXXXXXXXXXXXXXXXXMVGQMQMGPMGAFGGQPFAAGPGALMGQSMGGHMQQMQMHQXXXXXXXXXXXXXGAMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXENLAG----RQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQIEVREDSK 503          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: W2R296_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R296_PHYPN)

HSP 1 Score: 216 bits (550), Expect = 1.810e-64
Identity = 136/334 (40.72%), Postives = 173/334 (51.80%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHM+  G   +    +LE  GRSKGCGIV +AT + A+ AI +L +TEL GR IFVRED  ++  S+                                                                         G RVYV NL+W+  WQELKDHMK  GTVVHADV+  A G+S+GCG+VEY T   A +AI ELNNT L GRL+ VREDR+     P GG        A A          P G+G  RQL+VGNLP+D  W QLKDLF+T GDV+RADI      RS+G+G++R+ +A++A  A+ RL+G+ I GR IEVR D +
Sbjct:   88 DHMQAAG--PVELATVLEWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTSTAKPKR--------------------------------------------------------------------GFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE-----PEGGSISKFAKRAAA----------PRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 336          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A329T2W9_9STRA (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=A0A329T2W9_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.690e-63
Identity = 134/334 (40.12%), Postives = 172/334 (51.50%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHM+  G   +    +LE  GRSKGCG+V +AT + A+ AI +L +TEL GR IFVRED  ++  ++                                                                         G RVYV NL+W+  WQELKDHMK  GTVVHADV+  A G+S+GCG+VEY T   A +AI ELNNT L GRL+ VREDR+     P GG        A A          P G+G  RQL+VGNLP+D  W QLKDLF+T GDV+RADI      RS+G+G++R+ +A +A  A+ RL+G+ I GR IEVR D +
Sbjct:   94 DHMQAAG--PVELATVLEWNGRSKGCGVVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTAAAKPLR--------------------------------------------------------------------GFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE-----PEGGSISKFAKRASA----------PHGSGESRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 342          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A484EGA9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGA9_BRELC)

HSP 1 Score: 213 bits (542), Expect = 3.280e-63
Identity = 133/332 (40.06%), Postives = 169/332 (50.90%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVRED 996
            DHM   G   +    +LE  GRSKGCG+V +AT + A+ AI SL +TEL GR IFVRED  S+  S+                                                                         G RVYV NL+W   WQELKDHMK VGTVVHADV+  + G+S+GCG+VEY T   A  AI ELNNT L GRL+ VREDR+           GG ++  +   + P     P   G  RQL+VGNLP+D  W QLKDLF+T GDV+RADI      RS+G+G++RF +A +A  A+ +L+G+ + GR IEVR D
Sbjct:   92 DHMEAAGS--VEIATILEWNGRSKGCGVVTYATEEAAQNAIASLNDTELGGRKIFVREDRESQSVSAVKPKR--------------------------------------------------------------------GLRVYVGNLSWTVKWQELKDHMKQVGTVVHADVLELSNGRSKGCGLVEYSTEEEAALAISELNNTELEGRLIFVREDREPE---------GGSISKFVKRASAP-----PRVNGDGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYSDGRSRGFGIIRFTNAADACQAIEQLNGLEVEGRMIEVRLD 339          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A0P1AA48_PLAHL (Rna-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA48_PLAHL)

HSP 1 Score: 209 bits (531), Expect = 1.450e-61
Identity = 132/334 (39.52%), Postives = 172/334 (51.50%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            +HM+  G   +    +LE  GRSKGCGI+ +AT + A+EAI +L +TEL GR IFVRED  S+  ++                                                         G+P             G RVYV NL+W   WQELKDHMK  GTVVHADV+  A G+S+GCG+VEY T   A  AI ELNNT L GRL+ VREDR+           GG ++        P       G G  RQL+VGNLP+D  W QLKDLF+T G+V+RADI      RS+G+G++R+ +A +A  A+ R++G+ + GR IEVR D K
Sbjct:   92 EHMQVAG--PVETATVLEWNGRSKGCGIITYATEEAAQEAISTLNDTELGGRKIFVREDRESQFVAA---------------------------------------------------------GKPK-----------RGFRVYVGNLSWTVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYSTPEEAATAIAELNNTELDGRLIFVREDREPE---------GGSISKFAKRSNAP-----SRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTTAADAWQAIERMNGMEVEGRQIEVRLDKK 341          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: H3GHR3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM)

HSP 1 Score: 208 bits (529), Expect = 2.880e-61
Identity = 128/334 (38.32%), Postives = 173/334 (51.80%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHM+  G   +    +LE  GRSKGCG+V +AT + A+ AI++L ++EL GR IFVRED  ++  ++                                                                         G RVYV NL+W+  WQELKDHMK  GTVVHADV+ ++ G+S+GCG+VEY T   A +AI ELNN+ L GRL+ VREDR+            GG    +A  A       P G G  RQL+VGNLP++  W QLKDLF+T G+V+RADI      RS+G+G++R+ +A +A  A+ RL+G+ I GR IEVR D +
Sbjct:   93 DHMQAAG--PVELATVLEWNGRSKGCGVVTYATEEAAQNAIDTLNDSELGGRKIFVREDRETQPIAAVKPKR--------------------------------------------------------------------GFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDREPE----------GGSISKLAKRAAA-----PRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A3R7H492_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.270e-60
Identity = 133/334 (39.82%), Postives = 168/334 (50.30%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHM+  G   +    +LE  GRSKGCGIV +AT + A+ AI +L +TEL  R IFVRED  ++  ++                                                                         G RVYV NL W+  WQELKDHMK  GTVVHADV+ +A G+S+GCG+VEY T   A  AI +LNNT L GRL+ VREDR+     P GG        A  T A       P   G  RQL+VGNLP+D  W QLKDLF+T G+V+RADI      RS+G+G++R+A+   A  A+ RL+G+ I GR IEVR D K
Sbjct:  122 DHMQAAG--PVELATVLEWNGRSKGCGIVTYATEEAAQNAIATLNDTELGERKIFVREDRETQAVATTKPKR--------------------------------------------------------------------GFRVYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDRE-----PEGGSI---SKFAKRTAA-------PRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: A0A225W7L9_9STRA (RNA binding protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7L9_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.710e-59
Identity = 133/353 (37.68%), Postives = 172/353 (48.73%), Query Frame = 1
Query:    1 DHMRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGRTIFVREDNMSRGRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGRPAFYSGRGAGVGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQ-------------------LKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            DHM+  G   +    +LE  GRSKGCG+V +AT + A+ AI +L +TEL GR IFVRED  ++  S+                                                                         G RVYV NL+W+  WQELKDHMK  GTVVHADV+ ++ G+S+GCG+VEY T   A +AI ELNNT L GRL+ VREDR+     P GG        A A          P G G  RQL+VGNLP++  W Q                   LKDLF+T GDV+RADI      RS+G+G++R+ +A +A  A+ RL+G+ I GR IEVR D +
Sbjct:   85 DHMQAAGS--VELATVLEWNGRSKGCGVVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQASSTAKPKR--------------------------------------------------------------------GFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDRE-----PEGGSISKFAKRAAA----------PRGGGESRQLYVGNLPWETNWQQREXXXXXXXXXXXXXXXXXLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 352          
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 191 bits (486), Expect = 9.180e-57
Identity = 107/199 (53.77%), Postives = 134/199 (67.34%), Query Frame = 1
Query:  409 VGAAGTRVYVANLAWDTVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIRELNNTMLGGRLLLVREDR-DRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTGAGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLVRFASANEAANAVVRLHGVSIGGRAIEVREDTK 1002
            +G  GTRVYV NL+++  WQ+LKDHM+ VG VVHADV+ D  G+S+GCGIVEYD    A RAIRELNNT L GRL+ VREDR D+    P GGG+ GG ++        G GG P+ AG  RQL+VGNL ++ TW  LKD FK   DVQRA++  D   RS+G+G VRF +A EA  A   L+G ++  R IEVRED +
Sbjct:    1 MGGVGTRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKMGGPMGGGFQGGASMHRV-----GVGGPPSAAG--RQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNR 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7947.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8N0_9PHAE2.410e-7247.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGN3_ECTSI1.150e-7047.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2R296_PHYPN1.810e-6440.72Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
A0A329T2W9_9STRA1.690e-6340.12Uncharacterized protein n=25 Tax=Phytophthora TaxI... [more]
A0A484EGA9_BRELC3.280e-6340.06Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AA48_PLAHL1.450e-6139.52Rna-binding protein n=1 Tax=Plasmopara halstedii T... [more]
H3GHR3_PHYRM2.880e-6138.32Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7H492_9STRA1.270e-6039.82Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A225W7L9_9STRA1.710e-5937.68RNA binding protein n=1 Tax=Phytophthora megakarya... [more]
I2CPF4_NANGC9.180e-5753.77Rnp domain-containing protein n=1 Tax=Nannochlorop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7947contigP-wetherbeei_contig7947:1..2769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGN3
Preferred nameEIF4H
PFAMsRRM_1
Model size1002
Max annot lvl2759|Eukaryota
KEGG koko:K03258
KEGG Pathwayko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
Hectar predicted targeting categoryother localisation
Exons5
Evalue5.69e-69
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-10_002890.1
DescriptionRNA binding
Cds size996
COG categoryH
BRITEko00000,ko00001,ko03012,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7947.1.4prot_P-wetherbeei_contig7947.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7947 1..2763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.9003084-CDS-P-wetherbeei_contig7947:0..1181683187010.9003084-CDS-P-wetherbeei_contig7947:0..118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7947 1..118 -
1683187010.9124637-CDS-P-wetherbeei_contig7947:487..6741683187010.9124637-CDS-P-wetherbeei_contig7947:487..674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7947 488..674 -
1683187010.9263759-CDS-P-wetherbeei_contig7947:1410..15431683187010.9263759-CDS-P-wetherbeei_contig7947:1410..1543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7947 1411..1543 -
1683187010.9439363-CDS-P-wetherbeei_contig7947:1945..20411683187010.9439363-CDS-P-wetherbeei_contig7947:1945..2041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7947 1946..2041 -
1683187010.955178-CDS-P-wetherbeei_contig7947:2301..27631683187010.955178-CDS-P-wetherbeei_contig7947:2301..2763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7947 2302..2763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.9647713-UTR-P-wetherbeei_contig7947:2763..27691683187010.9647713-UTR-P-wetherbeei_contig7947:2763..2769Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7947 2764..2769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7947.1.4

>prot_P-wetherbeei_contig7947.1.4 ID=prot_P-wetherbeei_contig7947.1.4|Name=mRNA_P-wetherbeei_contig7947.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=332bp
MRGGGGDVIRADVLLEPGGRSKGCGIVEFATAKQAREAIESLTNTELKGR
TIFVREDNMSRGRSSAAAAAAAARGDVAPATTGDANGGDGGGAAAAPVAI
PAPAPIPAPTAPVPAPMPQPPQGRPAFYSGRGAGVGAAGTRVYVANLAWD
TVWQELKDHMKAVGTVVHADVITDARGQSRGCGIVEYDTATSAGRAIREL
NNTMLGGRLLLVREDRDRSHRCPPGGGYGGGMTVAMATGAIPGGGGGPTG
AGPIRQLFVGNLPYDYTWNQLKDLFKTCGDVQRADIMLDVSKRSKGWGLV
RFASANEAANAVVRLHGVSIGGRAIEVREDTK
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mRNA from alignment at P-wetherbeei_contig7947:1..2769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7947.1.4 ID=mRNA_P-wetherbeei_contig7947.1.4|Name=mRNA_P-wetherbeei_contig7947.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2769bp|location=Sequence derived from alignment at P-wetherbeei_contig7947:1..2769- (Phaeothamnion wetherbeei SAG_119_79)
GACCACATGCGCGGCGGTGGCGGCGACGTGATCCGTGCCGATGTCCTCCT GGAGCCCGGCGGCCGCAGCAAGGGCTGTGGTATAGTCGAATTCGCGACGG CCAAACAGGCACGTGAGGCCATCGAGAGCCTCACCAACACGGAGCTCAAG GGCCGCACCATCTTCGTGCGGGAGGACAATATGTCCCGCGGTCGGTCTTC GGCGGCGGCTGCGGCGGCAGCGGCGCGTGGAGATGTCGCGCCGGCGACAA CAGGCGACGCCAACGGCGGCGATGGTGGCGGTGCTGCGGCAGCGCCCGTC GCCATACCGGCGCCAGCGCCAATACCGGCGCCGACGGCACCCGTGCCGGC GCCGATGCCGCAGCCACCGCAGGGGCGACCCGCCTTTTACTCGGGCAGGG GTGCGGGGGTTGGCGCCGCTGGTACGAGAGTATACGTTGCGAACCTGGCG TGGGATACGGTGTGGCAGGTCAGTCGGTTGCGGGCTATAGCGGTTGCTTG CATGGGAGCAGTCTCCAAGTCAGCAGGTTTTGTAAAGTGTTGCCGGTTCG TTTTTCTTAACCGTCCGGTCTGCTAATATAAGCGTCGTGCTTGCGTCGAT AATAATGGGATGGACTTGGACCAGTTCCAGCATCCTCGTTGCCATTGATG CTGTTTTGACCTAGTTTGCATGTCAGCGTATCTTAAAACCTTCATCTTCT TTCCATGTCTGCTTCTTCCGGCCGGCAGGAGCTGAAGGACCACATGAAAG CGGTGGGCACGGTGGTTCACGCCGACGTCATCACGGACGCCCGCGGCCAG TCGAGGGGCTGTGGCATCGTCGAGGTACGATTCCTTTCTTTTCTTCCATG TAGTTTCATTTTTTTGTATCTTCTTTCCGTTTCTTTTTTCCATCTTCTGT TGTGGTTCTGTTGGAGGTTTTCCTTTTTTTGGCATTGGCGTCAGTGTCTT GTCTTCCTGCTTTTCTTCGCTTCGCGCTCTCCCTCTGCCAATGTTACGTG CAGCTGGATAGGAATGGCTGCCTCGCAGGAGTTTGAGGCTGCCACCACCA GCTTGCTATTTGAATGCAGGGTGGTCAGAATTGCATTACTTTTGCCCAGC AGTGGCTCGGCTGGCGCTGTATGGCTTCGGCTCGTATGCCATCGCTGCGT CCCTTGCTTTGTCTTAATCCAACCTCCTTTTCTTCTCTGGGGTCTTCGTG ATTTGCTCCTTCAAACGGGCGCACAGTATGACACGGCGACGTCGGCGGGG CGGGCGATCCGCGAGCTCAACAACACTATGCTTGGCGGCCGGCTGCTGCT CGTGAGGGAAGACCGCGACCGCAGCCATCGCTGCCCACCCGGTGGCGGCT ACGGTGGCGGTAGCGGCGGATTCGGCGGCGGCGGAAGCGGTAGCTTTGCC GGTGCCAGCGGCGGGCTCGGCATGTCAGCTATGGGCGGCATGGCTGGCGG CGGCGGCGGCGGCGGCGGCATGTCAATGGGCGGCGGCGGCATGACAATGG GCGGCGGCATGATGGGCGGCGGCAGCGGTGGTGGTGGTATCGGAGGTGGC GGCTCGATACCCGGGGGAGGGTACACGGGCGTGATGGCGCCGGGGATGGC CCAGATGGGGATGTCGCAAGTGTCCATGGGTATGGCGGGCTACATCGGAG GTGCAGGAATGTACAGCGGCGGCGGCGGCGGTTTCATGCAGCAGCAGGTG TGTACATTTTTGATGCTGGTGTGCCATATGAGCTCACATTCAGTGCGCGC GGATCTTTTTTGTGTTATCAGTTTCGTCAAGTTACAGGGCCCGCAATCGT TCACACACGCGTTCTCCCGACATTCTTCCTGGCATTTCATCCCGTTCTCT CTTTCTTCCTTTTATCTTCTCAACTGTTCCAACCTTTCAACGCCTCCTTC TTGCTGCCGCGAAACAGGGGATGCAGGTCCAACAAGTCCAACAGACGCAG CAGCAGTACCAGCAGCAGTTGCAGCAGCAACAACAGCTGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACC ACCACCATCAGCAGCAGATGGGCCTTGGCGGCGTCATCGCGGAAGGGATG ACCGTCGCCATGGCAACTGGCGCAATACCGGGCGGCGGCGGCGGACCGAC GGGGGCGGGGCCAATCCGGCAGCTGTTCGTGGGGAACCTGCCGTACGACT ACACATGGAACCAGCTGAAGGACCTGTTTAAGACGTGCGGCGACGTCCAG CGGGCGGACATCATGCTCGACGTCTCCAAGAGGTGCGACCGACCAGCCGG GCGGGCAGGCAAATGAGACAGCTTTCCTTTCGTATGTTCGTTTGTTTTGA GATGGTGGATGTTTTCCCGTTCAGCTTTTACAGAGCTGAACCTATTGAAC CGGATTTTTTTGCTGGATTCTTGGAATTGCATCTGCTGACGGCATCGCCT CGCTTTGCGTCGTCTGGTTGCAAGGAGCCGATATTGTTTGTCTTCCGCGA ACGTTGCTGCTATCTCCGCGCCGTCCAAGCACCCGGCTCTTCACCTTATC GTTCTCTGTGTGGCGGCTCATTCTTTTCCTGCTTGTTGCCGCGTGCAAAC GCCGTGGGTTTGCTGCTTGTCCCACAATTATTTCTTGCCGGCTGGCTGCA GGTCGAAGGGGTGGGGGCTCGTGCGCTTCGCATCCGCCAATGAAGCCGCA AACGCCGTGGTGCGTCTTCACGGCGTCAGCATTGGCGGCCGGGCCATTGA AGTTCGCGAGGATACCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7947:1..2769-

>mRNA_P-wetherbeei_contig7947.1.4 ID=mRNA_P-wetherbeei_contig7947.1.4|Name=mRNA_P-wetherbeei_contig7947.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=996bp|location=Sequence derived from alignment at P-wetherbeei_contig7947:1..2769- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGCGGTGGCGGCGACGTGATCCGTGCCGATGTCCTCCTGGAGCC
CGGCGGCCGCAGCAAGGGCTGTGGTATAGTCGAATTCGCGACGGCCAAAC
AGGCACGTGAGGCCATCGAGAGCCTCACCAACACGGAGCTCAAGGGCCGC
ACCATCTTCGTGCGGGAGGACAATATGTCCCGCGGTCGGTCTTCGGCGGC
GGCTGCGGCGGCAGCGGCGCGTGGAGATGTCGCGCCGGCGACAACAGGCG
ACGCCAACGGCGGCGATGGTGGCGGTGCTGCGGCAGCGCCCGTCGCCATA
CCGGCGCCAGCGCCAATACCGGCGCCGACGGCACCCGTGCCGGCGCCGAT
GCCGCAGCCACCGCAGGGGCGACCCGCCTTTTACTCGGGCAGGGGTGCGG
GGGTTGGCGCCGCTGGTACGAGAGTATACGTTGCGAACCTGGCGTGGGAT
ACGGTGTGGCAGGAGCTGAAGGACCACATGAAAGCGGTGGGCACGGTGGT
TCACGCCGACGTCATCACGGACGCCCGCGGCCAGTCGAGGGGCTGTGGCA
TCGTCGAGTATGACACGGCGACGTCGGCGGGGCGGGCGATCCGCGAGCTC
AACAACACTATGCTTGGCGGCCGGCTGCTGCTCGTGAGGGAAGACCGCGA
CCGCAGCCATCGCTGCCCACCCGGTGGCGGCTACGGTGGCGGGATGACCG
TCGCCATGGCAACTGGCGCAATACCGGGCGGCGGCGGCGGACCGACGGGG
GCGGGGCCAATCCGGCAGCTGTTCGTGGGGAACCTGCCGTACGACTACAC
ATGGAACCAGCTGAAGGACCTGTTTAAGACGTGCGGCGACGTCCAGCGGG
CGGACATCATGCTCGACGTCTCCAAGAGGTCGAAGGGGTGGGGGCTCGTG
CGCTTCGCATCCGCCAATGAAGCCGCAAACGCCGTGGTGCGTCTTCACGG
CGTCAGCATTGGCGGCCGGGCCATTGAAGTTCGCGAGGATACCAAA
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